Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Reverse (-)

21081489 .. 21084280

Gene Structure 2792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1218600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTTCAAACCCTAATCCGAGCTATTGCCATGGCCACCGCCACCACCACCGCAACCGCTCGCCACCCCACAATCTCTCTCCTAGTACCCAAACGCCTCTTCTCCACTTCCAAACTCACAAATACCCCTTCCATCCCATCCCTCATGCTCGGCCGTCGATCCCTCGCCCCTCTCTCCCACGCCGTCCGATTCCCTACCCCTACCACCCGCTACATTCCGATCCGCTGCCGGGTCAACCGATCTGGCGGTTCTTACTCGCCCCTCAACTCGGGTTCGAACTTCAGCGACCGTCCACCCACTGAAATGGCCCCGCTTTTTCCTGGTTGTGACTACGAGCACTGGCTCATCGTCATGGATAAGCCCGGCGGCGAGGGTGCTACAAAGCAGCAGATGATCGATTGTTATGTTCAGACCCTGGCCAAGGTCGTCGGGAGCGAGGAAGAAGCAAAGAAGAAGATATACAATGTCTCTTGTGAGAGGTATTTTGGTTTTGGTTGTGAGATTGATGAGGAGACCTCGAATAAGCTTGAAGGCTTGCCCGGTGTTCTTTTTGTTCTTCCGGATTCGTATGTTGATCCTGAGTACAAAGACTACGGTGCTGAGTTGTATGTGAATGGAGAAATTGTTCAAAGATCACCTGAGAGGCAGAGGAGGGTGGAGCCGCAGCCCTCGAGAGCTCAGGACAGACCAAGATACAATGACAGAACCCGTTATGTGCGCCGAAGGGAAAATGTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.82

Weight (kDa)

9.3

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	111 - 201	2.6e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	9 cut(s)	39, 51, 57, 208, 223, 246, 311, 366, 662
AclWI	GGATC	3 cut(s)	153, 214, 569
AcoI	YGGCCR	3 cut(s)	33, 151, 417
AcuI	CTGAAG	1 cut(s)	265
AfaI	GTAC	2 cut(s)	87, 584
AfiI	CCNNNNNNNGG	3 cut(s)	229, 268, 421
AgsI	TTSAA	3 cut(s)	8, 530, 629
AjnI	CCWGG	2 cut(s)	319, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	3 cut(s)	23, 526, 677
AluI	AGCT	3 cut(s)	23, 526, 677
Alw21I	GWGCWC	2 cut(s)	339, 679
Alw26I	GTCTC	2 cut(s)	472, 506
AlwI	GGATC	3 cut(s)	153, 214, 569
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	268, 670
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	4 cut(s)	33, 151, 306, 417
ApeKI	GCWGC	3 cut(s)	225, 385, 664
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	720
AspS9I	GGNCC	1 cut(s)	307
AsuC2I	CCSGG	3 cut(s)	230, 363, 540
AsuHPI	GGTGA	1 cut(s)	627
AsuII	TTCGAA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	268, 670
BalI	TGGCCA	2 cut(s)	35, 419
BanII	GRGCYC	1 cut(s)	679
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
Bbv12I	GWGCWC	2 cut(s)	339, 679
BbvI	GCAGC	3 cut(s)	212, 397, 676
BccI	CCATC	2 cut(s)	140, 145
BceAI	ACGGC	2 cut(s)	138, 167
BciT130I	CCWGG	2 cut(s)	321, 416
BcnI	CCSGG	3 cut(s)	230, 363, 540
BcoDI	GTCTC	2 cut(s)	472, 506
BfaI	CTAG	1 cut(s)	83
BisI	GCNGC	5 cut(s)	226, 367, 386, 662, 665
BlsI	GCNGC	5 cut(s)	227, 368, 387, 663, 666
Bme1390I	CCNGG	5 cut(s)	230, 321, 363, 416, 540
BmeT110I	CYCGRG	2 cut(s)	268, 670
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	309, 660
BmrFI	CCNGG	5 cut(s)	230, 321, 363, 416, 540
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	275
BpuMI	CCSGG	3 cut(s)	230, 363, 540
Bsa29I	ATCGAT	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	30, 414, 420
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 268, 421
Bse1I	ACTGG	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	321, 416
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	30, 414, 420
BseGI	GGATG	2 cut(s)	132, 137
BseLI	CCNNNNNNNGG	3 cut(s)	229, 268, 421
BseMII	CTCAG	4 cut(s)	570, 591, 630, 692
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	2 cut(s)	524, 664
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	3 cut(s)	212, 397, 676
Bsh1285I	CGRYCG	2 cut(s)	154, 289
BshFI	GGCC	4 cut(s)	35, 153, 308, 419
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	154, 289
BsiHKAI	GWGCWC	2 cut(s)	339, 679
BsiHKCI	CYCGRG	2 cut(s)	268, 670
BsiSI	CCGG	4 cut(s)	229, 363, 540, 560
BslI	CCNNNNNNNGG	3 cut(s)	229, 268, 421
BsmAI	GTCTC	2 cut(s)	472, 506
BsnI	GGCC	4 cut(s)	35, 153, 308, 419
Bso31I	GGTCTC	1 cut(s)	506
BsoBI	CYCGRG	2 cut(s)	268, 670
Bsp119I	TTCGAA	1 cut(s)	275
Bsp1286I	GDGCHC	2 cut(s)	339, 679
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	9 cut(s)	39, 51, 57, 208, 223, 246, 311, 366, 662
BspANI	GGCC	4 cut(s)	35, 153, 308, 419
BspCNI	CTCAG	4 cut(s)	571, 592, 631, 691
BspDI	ATCGAT	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	309, 660
BspPI	GGATC	3 cut(s)	153, 214, 569
BspT104I	TTCGAA	1 cut(s)	275
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	30, 414, 420
BssMI	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
BssT1I	CCWWGG	2 cut(s)	30, 420
Bst2UI	CCWGG	2 cut(s)	321, 416
Bst4CI	ACNGT	2 cut(s)	290, 596
Bst6I	CTCTTC	1 cut(s)	104
BstBI	TTCGAA	1 cut(s)	275
BstC8I	GCNNGC	2 cut(s)	61, 536
BstDEI	CTNAG	4 cut(s)	579, 600, 639, 678
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	2 cut(s)	132, 137
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	6 cut(s)	161, 222, 242, 396, 577, 635
BstMAI	GTCTC	2 cut(s)	472, 506
BstMBI	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
BstMCI	CGRYCG	2 cut(s)	154, 289
BstNI	CCWGG	2 cut(s)	321, 416
BstSCI	CCNGG	5 cut(s)	228, 319, 361, 414, 538
BstV1I	GCAGC	3 cut(s)	212, 397, 676
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	4 cut(s)	35, 153, 308, 419
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	132, 137
BtsIMutI	CAGTG	2 cut(s)	297, 337
Cac8I	GCNNGC	2 cut(s)	61, 536
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	720
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	86, 583
CviAII	CATG	3 cut(s)	31, 145, 352
CviQI	GTAC	2 cut(s)	86, 583
DdeI	CTNAG	4 cut(s)	579, 600, 639, 678
DpnI	GATC	6 cut(s)	160, 221, 241, 395, 576, 634
DpnII	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
EaeI	YGGCCR	3 cut(s)	33, 151, 417
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	677
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	30, 420
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	506
Eco52I	CGGCCG	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	265
Eco88I	CYCGRG	2 cut(s)	268, 670
EcoICRI	GAGCTC	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoRII	CCWGG	2 cut(s)	319, 414
EcoT14I	CCWWGG	2 cut(s)	30, 420
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	2 cut(s)	30, 420
FaeI	CATG	3 cut(s)	34, 148, 355
FaiI	YATR	8 cut(s)	32, 146, 353, 405, 460, 570, 609, 714
FatI	CATG	3 cut(s)	30, 144, 351
FauI	CCCGC	2 cut(s)	215, 318
Fnu4HI	GCNGC	5 cut(s)	226, 367, 386, 662, 665
FokI	GGATG	2 cut(s)	119, 124
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	5 cut(s)	226, 367, 386, 662, 665
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	5 cut(s)	226, 367, 386, 662, 665
HaeIII	GGCC	4 cut(s)	35, 153, 308, 419
HapII	CCGG	4 cut(s)	229, 363, 540, 560
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	3 cut(s)	34, 148, 355
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	524
HinfI	GANTC	2 cut(s)	189, 563
HpaII	CCGG	4 cut(s)	229, 363, 540, 560
HphI	GGTGA	1 cut(s)	627
Hpy166II	GTNNAC	2 cut(s)	235, 293
Hpy188I	TCNGA	4 cut(s)	20, 188, 219, 411
Hpy188III	TCNNGA	5 cut(s)	430, 560, 578, 672, 680
Hpy8I	GTNNAC	2 cut(s)	235, 293
Hpy99I	CGWCG	2 cut(s)	159, 431
HpyAV	CCTTC	3 cut(s)	138, 524, 717
HpyCH4III	ACNGT	2 cut(s)	290, 596
HpyF3I	CTNAG	4 cut(s)	579, 600, 639, 678
Hsp92II	CATG	3 cut(s)	34, 148, 355
HspAI	GCGC	1 cut(s)	718
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
LmnI	GCTCC	2 cut(s)	432, 658
Lsp1109I	GCAGC	3 cut(s)	212, 397, 676
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	326
MalI	GATC	6 cut(s)	160, 221, 241, 395, 576, 634
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
MboII	GAAGA	5 cut(s)	91, 452, 463, 466, 548
MhlI	GDGCHC	2 cut(s)	339, 679
MlsI	TGGCCA	2 cut(s)	35, 419
MluCI	AATT	1 cut(s)	621
MluNI	TGGCCA	2 cut(s)	35, 419
Mox20I	TGGCCA	2 cut(s)	35, 419
MroI	TCCGGA	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	624
MscI	TGGCCA	2 cut(s)	35, 419
MslI	CAYNNNNRTG	2 cut(s)	302, 350
Msp20I	TGGCCA	2 cut(s)	35, 419
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	4 cut(s)	229, 363, 540, 560
MspR9I	CCNGG	5 cut(s)	230, 321, 363, 416, 540
MvaI	CCWGG	2 cut(s)	321, 416
NciI	CCSGG	3 cut(s)	230, 363, 540
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
NlaIII	CATG	3 cut(s)	34, 148, 355
NlaIV	GGNNCC	2 cut(s)	309, 660
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	326
NspV	TTCGAA	1 cut(s)	275
PaeR7I	CTCGAG	1 cut(s)	670
PcsI	WCGNNNNNNNCGW	1 cut(s)	432
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	189, 563
PkrI	GCNGC	5 cut(s)	227, 368, 387, 663, 666
Psp124BI	GAGCTC	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	319, 414
PspGI	CCWGG	2 cut(s)	319, 414
PspN4I	GGNNCC	2 cut(s)	309, 660
PspPI	GGNCC	1 cut(s)	307
PstNI	CAGNNNCTG	1 cut(s)	415
RsaI	GTAC	2 cut(s)	87, 584
RsaNI	GTAC	2 cut(s)	86, 583
RseI	CAYNNNNRTG	2 cut(s)	302, 350
SacI	GAGCTC	1 cut(s)	679
SatI	GCNGC	5 cut(s)	226, 367, 386, 662, 665
Sau3AI	GATC	6 cut(s)	158, 219, 239, 393, 574, 632
Sau96I	GGNCC	1 cut(s)	307
ScrFI	CCNGG	5 cut(s)	230, 321, 363, 416, 540
SduI	GDGCHC	2 cut(s)	339, 679
SetI	ASST	7 cut(s)	25, 426, 482, 518, 528, 640, 679
Sfr274I	CTCGAG	1 cut(s)	670
SfuI	TTCGAA	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	670
SmiMI	CAYNNNNRTG	2 cut(s)	302, 350
SmlI	CTYRAG	1 cut(s)	670
SmoI	CTYRAG	1 cut(s)	670
Sse9I	AATT	1 cut(s)	621
SsiI	CCGC	9 cut(s)	39, 51, 57, 208, 223, 246, 311, 366, 662
SspMI	CTAG	1 cut(s)	83
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	5 cut(s)	228, 319, 361, 414, 538
StyI	CCWWGG	2 cut(s)	30, 420
TaaI	ACNGT	2 cut(s)	290, 596
TaqI	TCGA	5 cut(s)	157, 275, 396, 518, 671
TasI	AATT	1 cut(s)	621
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	2 cut(s)	369, 664
TfiI	GAWTC	2 cut(s)	189, 563
TscAI	CASTG	2 cut(s)	304, 344
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	3 cut(s)	225, 385, 664
Tsp45I	GTSAC	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	725
TspRI	CASTG	2 cut(s)	304, 344
XagI	CCTNNNNNAGG	1 cut(s)	419
XhoI	CTCGAG	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.