Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004540.1

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Reverse (-)

29225 .. 31362

Gene Structure 2138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004540.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggccgccgccgccaccaccggtcgccaccccacgatctcctccctcatccccaaacgcctcctctccacctccaaaatcacccaacccccctccgtcccctctctcatcctcggccgtcggtctctcgcgccgctctcccacgccgtccgccccttccccgccacgcgtttcacctctattcgctgccgcgtcaaccgctccggcgggtcgtactccccccttaactccggttcgaacttcagcgagcgcccgccgaccgagatggctccgctcttccccggctgcgactacgagcacttcctcatcgtcatggacaagcccggcggtgaaggagccacgaagcaacagatgatcgattgctatgttcagacagccgctaaagtcctcgggagtgaggaagaagcgaagaagaagatctacaatgtgtcatgcgagaggtattttggttttggcgttaacattgatgaggagactgccaacaagcttgaaggtttgcccggagttctttttgtgcttccggattcgtatgttgatgctgagaatcaagactatggggattacaactacgttcatctcagtttcgggattcaaccaagtgtcgtaaactgcttaagacttgttagaaagagcattggatattggcatattgccctgatggtgtttggagttgttctggagcagcctccaaacagggaagccccagcctcacaccactggtgtatgacaatgtccgtaaactctaacccgcccacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

27.73

Weight (kDa)

8.19

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	136, 201, 274
AccII	CGCG	3 cut(s)	131, 169, 192
AccIII	TCCGGA	1 cut(s)	520
AcoI	YGGCCR	2 cut(s)	3, 115
AcuI	CTGAAG	1 cut(s)	226
AfaI	GTAC	1 cut(s)	215
AflII	CTTAAG	1 cut(s)	613
AflIII	ACRYGT	1 cut(s)	167
AgeI	ACCGGT	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	491, 593
AluBI	AGCT	1 cut(s)	487
AluI	AGCT	1 cut(s)	487
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	129, 467
Ama87I	CYCGRG	1 cut(s)	389
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	2 cut(s)	3, 115
ApeKI	GCWGC	3 cut(s)	186, 285, 682
AsiGI	ACCGGT	1 cut(s)	20
AspLEI	GCGC	2 cut(s)	133, 252
AsuC2I	CCSGG	3 cut(s)	282, 324, 501
AsuHPI	GGTGA	3 cut(s)	73, 166, 341
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	389
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	3 cut(s)	173, 272, 694
BccI	CCATC	2 cut(s)	259, 652
BceAI	ACGGC	2 cut(s)	102, 131
BcnI	CCSGG	3 cut(s)	282, 324, 501
BcoDI	GTCTC	2 cut(s)	129, 467
BfoI	RGCGCY	1 cut(s)	253
BfrI	CTTAAG	1 cut(s)	613
BglII	AGATCT	1 cut(s)	417
BisI	GCNGC	9 cut(s)	6, 9, 12, 134, 187, 190, 286, 378, 683
BlsI	GCNGC	9 cut(s)	7, 10, 13, 135, 188, 191, 287, 379, 684
Bme1390I	CCNGG	3 cut(s)	282, 324, 501
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	2 cut(s)	270, 337
BmrFI	CCNGG	3 cut(s)	282, 324, 501
BmsI	GCATC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	698
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	3 cut(s)	282, 324, 501
Bsa29I	ATCGAT	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	129
BsaJI	CCNNGG	3 cut(s)	112, 280, 388
BsaWI	WCCGGW	3 cut(s)	20, 230, 520
Bse118I	RCCGGY	1 cut(s)	20
Bse1I	ACTGG	1 cut(s)	722
BseAI	TCCGGA	1 cut(s)	520
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	3 cut(s)	112, 280, 388
BseGI	GGATG	2 cut(s)	48, 108
BseMII	CTCAG	2 cut(s)	531, 592
BseNI	ACTGG	1 cut(s)	722
BseRI	GAGGAG	3 cut(s)	31, 53, 485
BseX3I	CGGCCG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	173, 272, 694
BseYI	CCCAGC	1 cut(s)	703
Bsh1236I	CGCG	3 cut(s)	131, 169, 192
Bsh1285I	CGRYCG	3 cut(s)	25, 118, 261
BshFI	GGCC	2 cut(s)	5, 117
BshTI	ACCGGT	1 cut(s)	20
BshVI	ATCGAT	1 cut(s)	357
BsiEI	CGRYCG	3 cut(s)	25, 118, 261
BsiHKAI	GWGCWC	1 cut(s)	300
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	7 cut(s)	21, 204, 231, 282, 324, 501, 521
BslFI	GGGAC	1 cut(s)	83
BsmAI	GTCTC	2 cut(s)	129, 467
BsmFI	GGGAC	1 cut(s)	83
BsnI	GGCC	2 cut(s)	5, 117
Bso31I	GGTCTC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	389
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	3 cut(s)	36, 354, 417
BspANI	GGCC	2 cut(s)	5, 117
BspCNI	CTCAG	2 cut(s)	532, 591
BspDI	ATCGAT	1 cut(s)	357
BspEI	TCCGGA	1 cut(s)	520
BspFNI	CGCG	3 cut(s)	131, 169, 192
BspLI	GGNNCC	2 cut(s)	270, 337
BspQI	GCTCTTC	1 cut(s)	281
BspT104I	TTCGAA	1 cut(s)	236
BspTI	CTTAAG	1 cut(s)	613
BspTNI	GGTCTC	1 cut(s)	129
BsrBI	CCGCTC	3 cut(s)	136, 201, 274
BsrFI	RCCGGY	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	722
BssAI	RCCGGY	1 cut(s)	20
BssECI	CCNNGG	3 cut(s)	112, 280, 388
BssMI	GATC	3 cut(s)	36, 354, 417
Bst6I	CTCTTC	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	613
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	248, 254
BstDEI	CTNAG	2 cut(s)	540, 578
BstF5I	GGATG	2 cut(s)	48, 108
BstFNI	CGCG	3 cut(s)	131, 169, 192
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	2 cut(s)	133, 252
BstKTI	GATC	3 cut(s)	39, 357, 420
BstMAI	GTCTC	2 cut(s)	129, 467
BstMBI	GATC	3 cut(s)	36, 354, 417
BstMCI	CGRYCG	3 cut(s)	25, 118, 261
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 198
BstSCI	CCNGG	3 cut(s)	280, 322, 499
BstUI	CGCG	3 cut(s)	131, 169, 192
BstV1I	GCAGC	3 cut(s)	173, 272, 694
BstX2I	RGATCY	1 cut(s)	417
BstYI	RGATCY	1 cut(s)	417
BstZI	CGGCCG	1 cut(s)	115
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	5, 117
BsuTUI	ATCGAT	1 cut(s)	357
BtsCI	GGATG	2 cut(s)	48, 108
BtsIMutI	CAGTG	1 cut(s)	715
Cac8I	GCNNGC	2 cut(s)	248, 254
CfoI	GCGC	2 cut(s)	133, 252
Cfr10I	RCCGGY	1 cut(s)	20
ClaI	ATCGAT	1 cut(s)	357
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	214
CspAI	ACCGGT	1 cut(s)	20
CviAII	CATG	2 cut(s)	313, 432
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	2 cut(s)	540, 578
DpnI	GATC	3 cut(s)	38, 356, 419
DpnII	GATC	3 cut(s)	36, 354, 417
EaeI	YGGCCR	2 cut(s)	3, 115
EagI	CGGCCG	1 cut(s)	115
Eam1104I	CTCTTC	1 cut(s)	281
EarI	CTCTTC	1 cut(s)	281
EciI	GGCGGA	1 cut(s)	140
EclXI	CGGCCG	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	226
Eco88I	CYCGRG	1 cut(s)	389
FaeI	CATG	2 cut(s)	316, 435
FaiI	YATR	7 cut(s)	314, 366, 433, 531, 555, 648, 725
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	2 cut(s)	312, 431
FauI	CCCGC	4 cut(s)	169, 200, 261, 756
Fnu4HI	GCNGC	9 cut(s)	6, 9, 12, 134, 187, 190, 286, 378, 683
FokI	GGATG	2 cut(s)	35, 95
Fsp4HI	GCNGC	9 cut(s)	6, 9, 12, 134, 187, 190, 286, 378, 683
GlaI	GCGC	2 cut(s)	132, 251
GluI	GCNGC	9 cut(s)	6, 9, 12, 134, 187, 190, 286, 378, 683
GsaI	CCCAGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	698
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	5, 117
HapII	CCGG	7 cut(s)	21, 204, 231, 282, 324, 501, 521
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	133, 252
Hin1II	CATG	2 cut(s)	316, 435
Hin6I	GCGC	2 cut(s)	131, 250
HinP1I	GCGC	2 cut(s)	131, 250
HincII	GTYRAC	2 cut(s)	196, 460
HindII	GTYRAC	2 cut(s)	196, 460
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	3 cut(s)	524, 544, 589
HpaI	GTTAAC	1 cut(s)	460
HpaII	CCGG	7 cut(s)	21, 204, 231, 282, 324, 501, 521
HphI	GGTGA	3 cut(s)	73, 166, 341
Hpy166II	GTNNAC	4 cut(s)	196, 460, 607, 739
Hpy188I	TCNGA	1 cut(s)	372
Hpy188III	TCNNGA	5 cut(s)	391, 521, 548, 586, 677
Hpy8I	GTNNAC	4 cut(s)	196, 460, 607, 739
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	166, 326, 485
HpyCH4IV	ACGT	1 cut(s)	570
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 198
HpyF3I	CTNAG	2 cut(s)	540, 578
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	2 cut(s)	316, 435
HspAI	GCGC	2 cut(s)	131, 250
Kpn2I	TCCGGA	1 cut(s)	520
KspAI	GTTAAC	1 cut(s)	460
Kzo9I	GATC	3 cut(s)	36, 354, 417
LguI	GCTCTTC	1 cut(s)	281
LmnI	GCTCC	4 cut(s)	206, 274, 335, 679
Lsp1109I	GCAGC	3 cut(s)	173, 272, 694
LweI	GCATC	1 cut(s)	526
MaeII	ACGT	1 cut(s)	570
MalI	GATC	3 cut(s)	38, 356, 419
MbiI	CCGCTC	3 cut(s)	136, 201, 274
MboI	GATC	3 cut(s)	36, 354, 417
MboII	GAAGA	5 cut(s)	268, 413, 421, 424, 427
MflI	RGATCY	1 cut(s)	417
MhlI	GDGCHC	1 cut(s)	300
MluI	ACGCGT	1 cut(s)	167
MroI	TCCGGA	1 cut(s)	520
MseI	TTAA	3 cut(s)	225, 459, 614
MslI	CAYNNNNRTG	1 cut(s)	311
MspCI	CTTAAG	1 cut(s)	613
MspI	CCGG	7 cut(s)	21, 204, 231, 282, 324, 501, 521
MspR9I	CCNGG	3 cut(s)	282, 324, 501
MvnI	CGCG	3 cut(s)	131, 169, 192
MwoI	GCNNNNNNNGC	2 cut(s)	11, 198
NciI	CCSGG	3 cut(s)	282, 324, 501
NdeII	GATC	3 cut(s)	36, 354, 417
NlaIII	CATG	2 cut(s)	316, 435
NlaIV	GGNNCC	2 cut(s)	270, 337
NmeAIII	GCCGAG	1 cut(s)	93
NspV	TTCGAA	1 cut(s)	236
PciSI	GCTCTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	524, 544, 589
PflFI	GACNNNGTC	1 cut(s)	730
PinAI	ACCGGT	1 cut(s)	20
PkrI	GCNGC	9 cut(s)	7, 10, 13, 135, 188, 191, 287, 379, 684
PspFI	CCCAGC	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	270, 337
PsuI	RGATCY	1 cut(s)	417
PsyI	GACNNNGTC	1 cut(s)	730
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	281
SaqAI	TTAA	3 cut(s)	225, 459, 614
SatI	GCNGC	9 cut(s)	6, 9, 12, 134, 187, 190, 286, 378, 683
Sau3AI	GATC	3 cut(s)	36, 354, 417
ScrFI	CCNGG	3 cut(s)	282, 324, 501
SduI	GDGCHC	1 cut(s)	300
SetI	ASST	7 cut(s)	74, 179, 443, 489, 496, 573, 758
SfaNI	GCATC	1 cut(s)	526
SfuI	TTCGAA	1 cut(s)	236
SmiMI	CAYNNNNRTG	1 cut(s)	311
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
StyD4I	CCNGG	3 cut(s)	280, 322, 499
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	2 cut(s)	236, 357
TaqII	GACCGA	2 cut(s)	111, 275
TauI	GCSGC	6 cut(s)	8, 11, 14, 136, 192, 380
TfiI	GAWTC	3 cut(s)	524, 544, 589
Tru1I	TTAA	3 cut(s)	225, 459, 614
Tru9I	TTAA	3 cut(s)	225, 459, 614
TscAI	CASTG	1 cut(s)	722
TseI	GCWGC	3 cut(s)	186, 285, 682
TspDTI	ATGAA	1 cut(s)	563
TspGWI	ACGGA	2 cut(s)	85, 724
TspRI	CASTG	1 cut(s)	722
Tth111I	GACNNNGTC	1 cut(s)	730
Vha464I	CTTAAG	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.