RchiOBHm_Chr7g0223791

DAG protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0011905
Physical Location & Seq
Reverse (-)
45669756 .. 45673241
3486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20038

Sequence Viewer

Length: 732 bp
ATGGTTCAAACCCTAGTCCGAACCATAGCCATGGCCGCCGCCGCCACCACCGGTCGCCACCCCACAATCTCCTCCCTCATCCCCAAACGCCTCCTCTCCACCTCCAAAATCACCCAACCCCCCTCCGTCCCCTCTCTCATCCTCGGCCGTCGATCTCTCGCGCCGCTCTCCCACGCCGTCCGTCCCTTCCCCGCCACGCGTTTCACCTCTATTCGCTGCCGCGTCAACCGCTCCGGCGGGTCGTACTCCCCCCTCAACTCCGGTTCGAACTTCAGCGAGCGCCCGCCGACCGAGATGGCTCCGCTCTTCCCCGGCTGCGACTACGAGCACTTCCTCATCGTCATGGACAAGCCCGGCGGCGAAGGAGCCACGAAGCAACAGATGATCGATTGCTATGTTCAGACAGCCGCTAAAGTCCTTGGGAGTGAGGAAGAAGCGAAGAAGAAGATTTACAATGTGTCATGCGAGAGGTATTTTGGTTTTGGCGTTAACATTGATGAGGAGACTGCCAACAAGCTTGAAGGTTTGCCCGGAGTTCTTTTTGTGCTTCCGGATTCGTATGTTGATGCTGAGAATCAAGACTATGGGGCTGAGTTGTTTGTCAACGGAGAAATTGTTCAGAGGTCTCCTGAAAGGCAGAGGAGGGTGGAGCCACAGCCCTCAAGAGCTCAGGACAGACCTCGATACAATGACAGAACCCGATATGTGCGTAGAAGGGAAAATGTGCGGTAA

Protein Analysis

243

Amino Acids

27.18

Weight (kDa)

9.45

Isoelectric Point (pI)

58.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 108 - 198 3.5e-37 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32580 AT2G35240
fragaria_vesca FvH4_7g07460
malus_domestica MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica Prupe.1G045300_v2.0.a1
pyrus_communis pycom13g19350 pycom17g21670
rosa_chinensis RchiOBHm_Chr7g0223791
rosa_laevigata RLG00000001946
rosa_multiflora Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii Rroxscaffold_3G00235330
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana Rw7G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 166, 231, 304
AccII CGCG 3 cut(s) 161, 199, 222
AccIII TCCGGA 1 cut(s) 550
AcoI YGGCCR 2 cut(s) 33, 145
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 8, 521
AloI GAACNNNNNNTCC 2 cut(s) 600, 632
AluBI AGCT 2 cut(s) 517, 668
AluI AGCT 2 cut(s) 517, 668
Alw21I GWGCWC 2 cut(s) 330, 670
Alw26I GTCTC 2 cut(s) 497, 630
Aor13HI TCCGGA 1 cut(s) 550
AoxI GGCC 2 cut(s) 33, 145
ApeKI GCWGC 2 cut(s) 216, 315
AsiGI ACCGGT 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 615
AspLEI GCGC 2 cut(s) 163, 282
AsuC2I CCSGG 3 cut(s) 312, 354, 531
AsuHPI GGTGA 2 cut(s) 103, 196
AsuII TTCGAA 1 cut(s) 266
BanII GRGCYC 1 cut(s) 670
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
Bbv12I GWGCWC 2 cut(s) 330, 670
BbvI GCAGC 2 cut(s) 203, 302
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 132, 161
BcnI CCSGG 3 cut(s) 312, 354, 531
BcoDI GTCTC 2 cut(s) 497, 630
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 283
BisI GCNGC 9 cut(s) 36, 39, 42, 164, 217, 220, 316, 358, 408
BlsI GCNGC 9 cut(s) 37, 40, 43, 165, 218, 221, 317, 359, 409
Bme1390I CCNGG 3 cut(s) 312, 354, 531
BmiI GGNNCC 3 cut(s) 300, 367, 651
BmrFI CCNGG 3 cut(s) 312, 354, 531
BmsI GCATC 1 cut(s) 556
Bpu10I CCTNAGC 1 cut(s) 669
Bpu14I TTCGAA 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 646
BpuMI CCSGG 3 cut(s) 312, 354, 531
Bsa29I ATCGAT 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 630
BsaJI CCNNGG 4 cut(s) 30, 142, 310, 418
BsaWI WCCGGW 3 cut(s) 50, 260, 550
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bse118I RCCGGY 1 cut(s) 50
BseAI TCCGGA 1 cut(s) 550
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 30, 142, 310, 418
BseGI GGATG 2 cut(s) 78, 138
BseMII CTCAG 3 cut(s) 561, 582, 683
BseRI GAGGAG 4 cut(s) 61, 83, 515, 655
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 203, 302
Bsh1236I CGCG 3 cut(s) 161, 199, 222
Bsh1285I CGRYCG 3 cut(s) 55, 148, 291
BshFI GGCC 2 cut(s) 35, 147
BshTI ACCGGT 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 3 cut(s) 55, 148, 291
BsiHKAI GWGCWC 2 cut(s) 330, 670
BsiSI CCGG 7 cut(s) 51, 234, 261, 312, 354, 531, 551
BslFI GGGAC 2 cut(s) 113, 168
BsmAI GTCTC 2 cut(s) 497, 630
BsmFI GGGAC 2 cut(s) 113, 168
BsnI GGCC 2 cut(s) 35, 147
Bso31I GGTCTC 1 cut(s) 630
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 330, 670
Bsp13I TCCGGA 1 cut(s) 550
Bsp143I GATC 2 cut(s) 152, 384
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 2 cut(s) 35, 147
BspCNI CTCAG 3 cut(s) 562, 583, 682
BspDI ATCGAT 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 550
BspFNI CGCG 3 cut(s) 161, 199, 222
BspLI GGNNCC 3 cut(s) 300, 367, 651
BspQI GCTCTTC 1 cut(s) 311
BspT104I TTCGAA 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 630
BsrBI CCGCTC 3 cut(s) 166, 231, 304
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 30, 142, 310, 418
BssMI GATC 2 cut(s) 152, 384
BssT1I CCWWGG 2 cut(s) 30, 418
Bst6I CTCTTC 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 278, 284
BstDEI CTNAG 3 cut(s) 570, 591, 669
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 78, 138
BstFNI CGCG 3 cut(s) 161, 199, 222
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 2 cut(s) 163, 282
BstKTI GATC 2 cut(s) 155, 387
BstMAI GTCTC 2 cut(s) 497, 630
BstMBI GATC 2 cut(s) 152, 384
BstMCI CGRYCG 3 cut(s) 55, 148, 291
BstMWI GCNNNNNNNGC 3 cut(s) 35, 41, 228
BstSCI CCNGG 3 cut(s) 310, 352, 529
BstUI CGCG 3 cut(s) 161, 199, 222
BstV1I GCAGC 2 cut(s) 203, 302
BstXI CCANNNNNNTGG 1 cut(s) 31
BstZI CGGCCG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 2 cut(s) 35, 147
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 78, 138
Cac8I GCNNGC 2 cut(s) 278, 284
CfoI GCGC 2 cut(s) 163, 282
Cfr10I RCCGGY 1 cut(s) 50
ClaI ATCGAT 1 cut(s) 387
CseI GACGC 1 cut(s) 211
Csp6I GTAC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 3 cut(s) 31, 343, 462
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 3 cut(s) 570, 591, 669
DpnI GATC 2 cut(s) 154, 386
DpnII GATC 2 cut(s) 152, 384
EaeI YGGCCR 2 cut(s) 33, 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
Ecl136II GAGCTC 1 cut(s) 668
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 2 cut(s) 30, 418
Eco24I GRGCYC 1 cut(s) 670
Eco31I GGTCTC 1 cut(s) 630
Eco52I CGGCCG 1 cut(s) 145
Eco53kI GAGCTC 1 cut(s) 668
Eco57I CTGAAG 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 668
EcoT14I CCWWGG 2 cut(s) 30, 418
EcoT38I GRGCYC 1 cut(s) 670
ErhI CCWWGG 2 cut(s) 30, 418
FaeI CATG 3 cut(s) 34, 346, 465
FaiI YATR 8 cut(s) 26, 32, 344, 396, 463, 561, 585, 705
FaqI GGGAC 2 cut(s) 113, 168
FatI CATG 3 cut(s) 30, 342, 461
FauI CCCGC 3 cut(s) 199, 230, 291
Fnu4HI GCNGC 9 cut(s) 36, 39, 42, 164, 217, 220, 316, 358, 408
FokI GGATG 2 cut(s) 65, 125
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 9 cut(s) 36, 39, 42, 164, 217, 220, 316, 358, 408
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 162, 281
GluI GCNGC 9 cut(s) 36, 39, 42, 164, 217, 220, 316, 358, 408
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 2 cut(s) 35, 147
HapII CCGG 7 cut(s) 51, 234, 261, 312, 354, 531, 551
HgaI GACGC 1 cut(s) 211
HhaI GCGC 2 cut(s) 163, 282
Hin1II CATG 3 cut(s) 34, 346, 465
Hin6I GCGC 2 cut(s) 161, 280
HinP1I GCGC 2 cut(s) 161, 280
HincII GTYRAC 3 cut(s) 226, 490, 604
HindII GTYRAC 3 cut(s) 226, 490, 604
HindIII AAGCTT 1 cut(s) 515
HinfI GANTC 2 cut(s) 554, 574
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 7 cut(s) 51, 234, 261, 312, 354, 531, 551
HphI GGTGA 2 cut(s) 103, 196
Hpy166II GTNNAC 3 cut(s) 226, 490, 604
Hpy188I TCNGA 3 cut(s) 20, 402, 621
Hpy188III TCNNGA 5 cut(s) 551, 578, 629, 663, 671
Hpy8I GTNNAC 3 cut(s) 226, 490, 604
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 4 cut(s) 196, 356, 515, 708
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 41, 228
HpyF3I CTNAG 3 cut(s) 570, 591, 669
Hsp92II CATG 3 cut(s) 34, 346, 465
HspAI GCGC 2 cut(s) 161, 280
Kpn2I TCCGGA 1 cut(s) 550
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 152, 384
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 4 cut(s) 236, 304, 365, 649
LpnPI CCDG 9 cut(s) 64, 247, 274, 325, 367, 544, 564, 642, 656
Lsp1109I GCAGC 2 cut(s) 203, 302
LweI GCATC 1 cut(s) 556
MaeI CTAG 1 cut(s) 14
MalI GATC 2 cut(s) 154, 386
MbiI CCGCTC 3 cut(s) 166, 231, 304
MboI GATC 2 cut(s) 152, 384
MboII GAAGA 5 cut(s) 298, 443, 451, 454, 457
MhlI GDGCHC 2 cut(s) 330, 670
MluCI AATT 1 cut(s) 612
MluI ACGCGT 1 cut(s) 197
MroI TCCGGA 1 cut(s) 550
MroXI GAANNNNTTC 1 cut(s) 615
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 2 cut(s) 29, 341
MspI CCGG 7 cut(s) 51, 234, 261, 312, 354, 531, 551
MspR9I CCNGG 3 cut(s) 312, 354, 531
MvnI CGCG 3 cut(s) 161, 199, 222
MwoI GCNNNNNNNGC 3 cut(s) 35, 41, 228
NciI CCSGG 3 cut(s) 312, 354, 531
NcoI CCATGG 1 cut(s) 30
NdeII GATC 2 cut(s) 152, 384
NlaIII CATG 3 cut(s) 34, 346, 465
NlaIV GGNNCC 3 cut(s) 300, 367, 651
NmeAIII GCCGAG 1 cut(s) 123
NspV TTCGAA 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 311
PdmI GAANNNNTTC 1 cut(s) 615
PfeI GAWTC 2 cut(s) 554, 574
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 9 cut(s) 37, 40, 43, 165, 218, 221, 317, 359, 409
Psp124BI GAGCTC 1 cut(s) 670
PspN4I GGNNCC 3 cut(s) 300, 367, 651
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 29, 341
SacI GAGCTC 1 cut(s) 670
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 9 cut(s) 36, 39, 42, 164, 217, 220, 316, 358, 408
Sau3AI GATC 2 cut(s) 152, 384
ScrFI CCNGG 3 cut(s) 312, 354, 531
SduI GDGCHC 2 cut(s) 330, 670
SetI ASST 8 cut(s) 104, 209, 473, 519, 526, 626, 670, 682
SfaNI GCATC 1 cut(s) 556
SfuI TTCGAA 1 cut(s) 266
SmiMI CAYNNNNRTG 2 cut(s) 29, 341
SmlI CTYRAG 1 cut(s) 661
SmoI CTYRAG 1 cut(s) 661
Sse9I AATT 1 cut(s) 612
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 670
StyD4I CCNGG 3 cut(s) 310, 352, 529
StyI CCWWGG 2 cut(s) 30, 418
TaqI TCGA 4 cut(s) 151, 266, 387, 682
TaqII GACCGA 1 cut(s) 305
TasI AATT 1 cut(s) 612
TauI GCSGC 7 cut(s) 38, 41, 44, 166, 222, 360, 410
TfiI GAWTC 2 cut(s) 554, 574
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseI GCWGC 2 cut(s) 216, 315
TspGWI ACGGA 3 cut(s) 115, 170, 621
XmnI GAANNNNTTC 1 cut(s) 615
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.