Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Forward (+)

22249357 .. 22251594

Gene Structure 2238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTTCAAACCCTAGTCCGAACCATAGCCATGGCCGCCGCCGCCACCACCGGTCGCCACCCCACAATCTCCTCCCTCATCCCCAAACGCCTCCTCTCCACCTCCAAAATCACCCAACCCCCCTCCGTCCCCTCTCTCATCCTCGGCCGTCGATCTCTCGCCCCGCTCTCCCACGCCGTCCGTCCCTTCCCGGCCCCGCGTTTCACTTCTATTCGCTGCCGCGTCAACCGCTCCGGCGGGTCGTACTCCCCCTTAACTCCGCCCGGCGGCGAAGGAGCCACGAAGCAACAGATGATCGATTGCTATGTTCAGACAGCCGCTAAAGTCCTCGGGAGTGAGGAAGAAGCGAAGAAGAAGATCTACAATGTGTCATGCGAGAGGTATTTTGGCTTCGGCGTTAACATTGATGAGGAGACCGCCAACAAGCTTGAAGGTTTGCCCGGAGTTCTTTTTGTGCTTCCGGATTCGTATGTTGATGCTGAGAATCAAGACTATGGGGCTGAGTTGTTTGTCAATGGAGAAATTGTTCAAAGGTCTCCCGAAAGGCAGAGGAGGGTCGAGCCACAGCCCTCAAGAGCCCAGGACAGACCTCGATACAATGACAGAACCCGATATGTGCGTAGAAGGGAAAATGTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

213

Amino Acids

23.76

Weight (kDa)

9.91

Isoelectric Point (pI)

63.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	87 - 168	1.3e-32	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	166, 231
AccII	CGCG	2 cut(s)	199, 222
AccIII	TCCGGA	1 cut(s)	460
AcoI	YGGCCR	2 cut(s)	33, 145
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	8, 431, 530
AjnI	CCWGG	1 cut(s)	579
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	1 cut(s)	427
AluI	AGCT	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	407, 540
Ama87I	CYCGRG	1 cut(s)	329
Aor13HI	TCCGGA	1 cut(s)	460
AoxI	GGCC	3 cut(s)	33, 145, 192
ApeKI	GCWGC	1 cut(s)	216
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	193
AsuC2I	CCSGG	3 cut(s)	191, 264, 441
AsuHPI	GGTGA	1 cut(s)	103
AvaI	CYCGRG	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	580
BarI	GAAGNNNNNNTAC	4 cut(s)	344, 374, 376, 406
BbvI	GCAGC	1 cut(s)	203
BceAI	ACGGC	2 cut(s)	132, 161
BciT130I	CCWGG	1 cut(s)	581
BcnI	CCSGG	3 cut(s)	191, 264, 441
BcoDI	GTCTC	2 cut(s)	407, 540
BfaI	CTAG	1 cut(s)	14
BglII	AGATCT	1 cut(s)	357
BisI	GCNGC	7 cut(s)	36, 39, 42, 217, 220, 268, 318
BlsI	GCNGC	7 cut(s)	37, 40, 43, 218, 221, 269, 319
Bme1390I	CCNGG	4 cut(s)	191, 264, 441, 581
BmeT110I	CYCGRG	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	2 cut(s)	195, 277
BmrFI	CCNGG	4 cut(s)	191, 264, 441, 581
BmsI	GCATC	1 cut(s)	466
BpuEI	CTTGAG	1 cut(s)	556
BpuMI	CCSGG	3 cut(s)	191, 264, 441
Bsa29I	ATCGAT	1 cut(s)	297
BsaI	GGTCTC	2 cut(s)	407, 540
BsaJI	CCNNGG	4 cut(s)	30, 142, 328, 579
BsaWI	WCCGGW	2 cut(s)	50, 460
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	460
BseBI	CCWGG	1 cut(s)	581
BseCI	ATCGAT	1 cut(s)	297
BseDI	CCNNGG	4 cut(s)	30, 142, 328, 579
BseGI	GGATG	2 cut(s)	78, 138
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	2 cut(s)	471, 492
BseRI	GAGGAG	4 cut(s)	61, 83, 425, 565
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	1 cut(s)	203
Bsh1236I	CGCG	2 cut(s)	199, 222
Bsh1285I	CGRYCG	2 cut(s)	55, 148
BshFI	GGCC	3 cut(s)	35, 147, 194
BshTI	ACCGGT	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	297
BsiEI	CGRYCG	2 cut(s)	55, 148
BsiHKCI	CYCGRG	1 cut(s)	329
BsiSI	CCGG	6 cut(s)	51, 191, 234, 264, 441, 461
BslFI	GGGAC	2 cut(s)	113, 168
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	407, 540
BsmFI	GGGAC	2 cut(s)	113, 168
BsnI	GGCC	3 cut(s)	35, 147, 194
Bso31I	GGTCTC	2 cut(s)	407, 540
BsoBI	CYCGRG	1 cut(s)	329
Bsp1286I	GDGCHC	1 cut(s)	580
Bsp13I	TCCGGA	1 cut(s)	460
Bsp143I	GATC	3 cut(s)	152, 294, 357
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	3 cut(s)	35, 147, 194
BspCNI	CTCAG	2 cut(s)	472, 493
BspDI	ATCGAT	1 cut(s)	297
BspEI	TCCGGA	1 cut(s)	460
BspFNI	CGCG	2 cut(s)	199, 222
BspLI	GGNNCC	2 cut(s)	195, 277
BspTNI	GGTCTC	2 cut(s)	407, 540
BsrBI	CCGCTC	2 cut(s)	166, 231
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	4 cut(s)	30, 142, 328, 579
BssMI	GATC	3 cut(s)	152, 294, 357
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	581
BstDEI	CTNAG	2 cut(s)	480, 501
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	78, 138
BstFNI	CGCG	2 cut(s)	199, 222
BstKTI	GATC	3 cut(s)	155, 297, 360
BstMAI	GTCTC	2 cut(s)	407, 540
BstMBI	GATC	3 cut(s)	152, 294, 357
BstMCI	CGRYCG	2 cut(s)	55, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 41, 228
BstNI	CCWGG	1 cut(s)	581
BstSCI	CCNGG	4 cut(s)	189, 262, 439, 579
BstUI	CGCG	2 cut(s)	199, 222
BstV1I	GCAGC	1 cut(s)	203
BstX2I	RGATCY	1 cut(s)	357
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	357
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	297
BsuRI	GGCC	3 cut(s)	35, 147, 194
BsuTUI	ATCGAT	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	78, 138
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	193
ClaI	ATCGAT	1 cut(s)	297
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	244
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	2 cut(s)	31, 372
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	480, 501
DpnI	GATC	3 cut(s)	154, 296, 359
DpnII	GATC	3 cut(s)	152, 294, 357
EaeI	YGGCCR	2 cut(s)	33, 145
EagI	CGGCCG	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	249
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	580
Eco31I	GGTCTC	2 cut(s)	407, 540
Eco52I	CGGCCG	1 cut(s)	145
Eco88I	CYCGRG	1 cut(s)	329
EcoRII	CCWGG	1 cut(s)	579
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	34, 375
FaiI	YATR	7 cut(s)	26, 32, 306, 373, 471, 495, 615
FaqI	GGGAC	2 cut(s)	113, 168
FatI	CATG	2 cut(s)	30, 371
FauI	CCCGC	3 cut(s)	171, 204, 230
Fnu4HI	GCNGC	7 cut(s)	36, 39, 42, 217, 220, 268, 318
FokI	GGATG	2 cut(s)	65, 125
FriOI	GRGCYC	1 cut(s)	580
Fsp4HI	GCNGC	7 cut(s)	36, 39, 42, 217, 220, 268, 318
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	7 cut(s)	36, 39, 42, 217, 220, 268, 318
HaeIII	GGCC	3 cut(s)	35, 147, 194
HapII	CCGG	6 cut(s)	51, 191, 234, 264, 441, 461
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	2 cut(s)	34, 375
HincII	GTYRAC	2 cut(s)	226, 400
HindII	GTYRAC	2 cut(s)	226, 400
HindIII	AAGCTT	1 cut(s)	425
HinfI	GANTC	2 cut(s)	464, 484
HpaI	GTTAAC	1 cut(s)	400
HpaII	CCGG	6 cut(s)	51, 191, 234, 264, 441, 461
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	226, 400
Hpy188I	TCNGA	2 cut(s)	20, 312
Hpy188III	TCNNGA	5 cut(s)	331, 461, 488, 539, 573
Hpy8I	GTNNAC	2 cut(s)	226, 400
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	4 cut(s)	196, 266, 425, 618
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 41, 228
HpyF3I	CTNAG	2 cut(s)	480, 501
Hsp92II	CATG	2 cut(s)	34, 375
Kpn2I	TCCGGA	1 cut(s)	460
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	152, 294, 357
LmnI	GCTCC	2 cut(s)	236, 275
LpnPI	CCDG	8 cut(s)	64, 204, 247, 277, 454, 474, 566, 593
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	466
MaeI	CTAG	1 cut(s)	14
MalI	GATC	3 cut(s)	154, 296, 359
MbiI	CCGCTC	2 cut(s)	166, 231
MboI	GATC	3 cut(s)	152, 294, 357
MboII	GAAGA	4 cut(s)	353, 361, 364, 367
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	580
MluCI	AATT	1 cut(s)	522
MroI	TCCGGA	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	525
MseI	TTAA	2 cut(s)	254, 399
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	6 cut(s)	51, 191, 234, 264, 441, 461
MspR9I	CCNGG	4 cut(s)	191, 264, 441, 581
MvaI	CCWGG	1 cut(s)	581
MvnI	CGCG	2 cut(s)	199, 222
MwoI	GCNNNNNNNGC	3 cut(s)	35, 41, 228
NciI	CCSGG	3 cut(s)	191, 264, 441
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	3 cut(s)	152, 294, 357
NlaIII	CATG	2 cut(s)	34, 375
NlaIV	GGNNCC	2 cut(s)	195, 277
NmeAIII	GCCGAG	1 cut(s)	123
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	2 cut(s)	464, 484
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	7 cut(s)	37, 40, 43, 218, 221, 269, 319
Psp6I	CCWGG	1 cut(s)	579
PspGI	CCWGG	1 cut(s)	579
PspN4I	GGNNCC	2 cut(s)	195, 277
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	29
SaqAI	TTAA	2 cut(s)	254, 399
SatI	GCNGC	7 cut(s)	36, 39, 42, 217, 220, 268, 318
Sau3AI	GATC	3 cut(s)	152, 294, 357
Sau96I	GGNCC	1 cut(s)	193
ScrFI	CCNGG	4 cut(s)	191, 264, 441, 581
SduI	GDGCHC	1 cut(s)	580
SetI	ASST	6 cut(s)	104, 383, 429, 436, 536, 592
SfaNI	GCATC	1 cut(s)	466
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	571
SmoI	CTYRAG	1 cut(s)	571
Sse9I	AATT	1 cut(s)	522
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	4 cut(s)	189, 262, 439, 579
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	4 cut(s)	151, 297, 558, 592
TasI	AATT	1 cut(s)	522
TauI	GCSGC	6 cut(s)	38, 41, 44, 222, 270, 320
TfiI	GAWTC	2 cut(s)	464, 484
Tru1I	TTAA	2 cut(s)	254, 399
Tru9I	TTAA	2 cut(s)	254, 399
TseI	GCWGC	1 cut(s)	216
TspGWI	ACGGA	2 cut(s)	115, 170
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.