Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Forward (+)

23324020 .. 23326303

Gene Structure 2284 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGGTTCAAACCCTAGTCCGAGCCATAGCCATGGCCGCCGCCGCCACCACCGGTCGCCACCCCACAATCTCCTCCCTCATCCCCAAACGCCTCCTCTCCACCTCCAAAATCACCCAACCCCCCTCTGTCCCCTCTCTCATCCTCGGCCGTCGATCTCTCGCCCCGCTCTCCCACGCCGTCCGTCCCTTCCCCGCCACGCGTTTCACTTCTATTCGCTGCCGCGTCAACCGCTCCGGCGGGTCGTACTCCCCCCTTAACTCCGGTTCGAACTTCAGCGAGCGCCCGCCGACCGAGATGGCCCCGCTCTTCCCCGGCTGCGACTACGAACACTTCCTCATCGTCATGGACAAGCCCGGCGGCGAAGGAGCCACGAAGCAACAGATGATCGATTGCTATGTTCAGACAGCCGCTAAAGTCCTCGGGAGTGAGGAAGAGGCGAAGAAGAAGATCTACAATGTGTCATGCGAGAGGTATTTTGGTTTTGGCGTTAACATTGATGAGGAGACCGCCAACAAGCTTGAAGGTTTGCCCGGAGTTCTTTTTGTGCTTCCGGATTCGTATGTTGATGCTGAGAATCAAGACTATGGGGCTGAGTTGTTTGTCAATGGAGAAATTGTTCAAAGGTCGCCCGAAAGGCAGAGGAGGGTGGAGCCACAGCCCTCAAGAGCCCAGGACAGACCTCGATACAATGACAGAACCCGATATGTGCGTAGAAGGGAAAATGTGCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.15

Weight (kDa)

9.45

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	108 - 198	3.5e-37	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	3 cut(s)	166, 231, 304
AccII	CGCG	2 cut(s)	199, 222
AccIII	TCCGGA	1 cut(s)	550
AcoI	YGGCCR	2 cut(s)	33, 145
AcuI	CTGAAG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	245
AflIII	ACRYGT	1 cut(s)	197
AgeI	ACCGGT	1 cut(s)	50
AgsI	TTSAA	3 cut(s)	8, 521, 620
AjnI	CCWGG	1 cut(s)	669
AloI	GAACNNNNNNTCC	2 cut(s)	600, 632
AluBI	AGCT	1 cut(s)	517
AluI	AGCT	1 cut(s)	517
Alw26I	GTCTC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	419
Aor13HI	TCCGGA	1 cut(s)	550
AoxI	GGCC	3 cut(s)	33, 145, 297
ApeKI	GCWGC	2 cut(s)	216, 315
AsiGI	ACCGGT	1 cut(s)	50
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	282
AspS9I	GGNCC	1 cut(s)	298
AsuC2I	CCSGG	3 cut(s)	312, 354, 531
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	670
BarI	GAAGNNNNNNTAC	2 cut(s)	434, 466
BbvI	GCAGC	2 cut(s)	203, 302
BccI	CCATC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	132, 161
BciT130I	CCWGG	1 cut(s)	671
BcnI	CCSGG	3 cut(s)	312, 354, 531
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	283
BglI	GCCNNNNNGGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	447
BisI	GCNGC	8 cut(s)	36, 39, 42, 217, 220, 316, 358, 408
BlsI	GCNGC	8 cut(s)	37, 40, 43, 218, 221, 317, 359, 409
Bme1390I	CCNGG	4 cut(s)	312, 354, 531, 671
BmeT110I	CYCGRG	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	3 cut(s)	300, 367, 651
BmrFI	CCNGG	4 cut(s)	312, 354, 531, 671
BmsI	GCATC	1 cut(s)	556
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	646
BpuMI	CCSGG	3 cut(s)	312, 354, 531
Bsa29I	ATCGAT	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	497
BsaJI	CCNNGG	5 cut(s)	30, 142, 310, 418, 669
BsaWI	WCCGGW	3 cut(s)	50, 260, 550
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bse118I	RCCGGY	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	671
BseCI	ATCGAT	1 cut(s)	387
BseDI	CCNNGG	5 cut(s)	30, 142, 310, 418, 669
BseGI	GGATG	2 cut(s)	78, 138
BseMII	CTCAG	2 cut(s)	561, 582
BseRI	GAGGAG	4 cut(s)	61, 83, 515, 655
BseX3I	CGGCCG	1 cut(s)	145
BseXI	GCAGC	2 cut(s)	203, 302
Bsh1236I	CGCG	2 cut(s)	199, 222
Bsh1285I	CGRYCG	3 cut(s)	55, 148, 291
BshFI	GGCC	3 cut(s)	35, 147, 299
BshTI	ACCGGT	1 cut(s)	50
BshVI	ATCGAT	1 cut(s)	387
BsiEI	CGRYCG	3 cut(s)	55, 148, 291
BsiHKCI	CYCGRG	1 cut(s)	419
BsiSI	CCGG	7 cut(s)	51, 234, 261, 312, 354, 531, 551
BslFI	GGGAC	2 cut(s)	113, 168
BsmAI	GTCTC	1 cut(s)	497
BsmFI	GGGAC	2 cut(s)	113, 168
BsnI	GGCC	3 cut(s)	35, 147, 299
Bso31I	GGTCTC	1 cut(s)	497
BsoBI	CYCGRG	1 cut(s)	419
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp13I	TCCGGA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	152, 384, 447
Bsp19I	CCATGG	1 cut(s)	30
BspANI	GGCC	3 cut(s)	35, 147, 299
BspCNI	CTCAG	2 cut(s)	562, 583
BspDI	ATCGAT	1 cut(s)	387
BspEI	TCCGGA	1 cut(s)	550
BspFNI	CGCG	2 cut(s)	199, 222
BspLI	GGNNCC	3 cut(s)	300, 367, 651
BspQI	GCTCTTC	1 cut(s)	311
BspT104I	TTCGAA	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	497
BsrBI	CCGCTC	3 cut(s)	166, 231, 304
BsrFI	RCCGGY	1 cut(s)	50
BssAI	RCCGGY	1 cut(s)	50
BssECI	CCNNGG	5 cut(s)	30, 142, 310, 418, 669
BssMI	GATC	3 cut(s)	152, 384, 447
BssT1I	CCWWGG	1 cut(s)	30
Bst2UI	CCWGG	1 cut(s)	671
Bst6I	CTCTTC	2 cut(s)	311, 426
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	2 cut(s)	278, 284
BstDEI	CTNAG	2 cut(s)	570, 591
BstDSI	CCRYGG	1 cut(s)	30
BstF5I	GGATG	2 cut(s)	78, 138
BstFNI	CGCG	2 cut(s)	199, 222
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	3 cut(s)	155, 387, 450
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	152, 384, 447
BstMCI	CGRYCG	3 cut(s)	55, 148, 291
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 41, 228, 634
BstNI	CCWGG	1 cut(s)	671
BstSCI	CCNGG	4 cut(s)	310, 352, 529, 669
BstUI	CGCG	2 cut(s)	199, 222
BstV1I	GCAGC	2 cut(s)	203, 302
BstX2I	RGATCY	1 cut(s)	447
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	447
BstZI	CGGCCG	1 cut(s)	145
Bsu15I	ATCGAT	1 cut(s)	387
BsuRI	GGCC	3 cut(s)	35, 147, 299
BsuTUI	ATCGAT	1 cut(s)	387
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	78, 138
Cac8I	GCNNGC	2 cut(s)	278, 284
CfoI	GCGC	1 cut(s)	282
Cfr10I	RCCGGY	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	387
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	244
CspAI	ACCGGT	1 cut(s)	50
CviAII	CATG	3 cut(s)	31, 343, 462
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	2 cut(s)	570, 591
DpnI	GATC	3 cut(s)	154, 386, 449
DpnII	GATC	3 cut(s)	152, 384, 447
EaeI	YGGCCR	2 cut(s)	33, 145
EagI	CGGCCG	1 cut(s)	145
Eam1104I	CTCTTC	2 cut(s)	311, 426
EarI	CTCTTC	2 cut(s)	311, 426
EclXI	CGGCCG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	670
Eco31I	GGTCTC	1 cut(s)	497
Eco52I	CGGCCG	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	256
Eco88I	CYCGRG	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	670
ErhI	CCWWGG	1 cut(s)	30
FaeI	CATG	3 cut(s)	34, 346, 465
FaiI	YATR	8 cut(s)	26, 32, 344, 396, 463, 561, 585, 705
FaqI	GGGAC	2 cut(s)	113, 168
FatI	CATG	3 cut(s)	30, 342, 461
FauI	CCCGC	5 cut(s)	171, 199, 230, 291, 309
Fnu4HI	GCNGC	8 cut(s)	36, 39, 42, 217, 220, 316, 358, 408
FokI	GGATG	2 cut(s)	65, 125
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	8 cut(s)	36, 39, 42, 217, 220, 316, 358, 408
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	8 cut(s)	36, 39, 42, 217, 220, 316, 358, 408
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	35, 147, 299
HapII	CCGG	7 cut(s)	51, 234, 261, 312, 354, 531, 551
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	3 cut(s)	34, 346, 465
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HincII	GTYRAC	2 cut(s)	226, 490
HindII	GTYRAC	2 cut(s)	226, 490
HindIII	AAGCTT	1 cut(s)	515
HinfI	GANTC	2 cut(s)	554, 574
HpaI	GTTAAC	1 cut(s)	490
HpaII	CCGG	7 cut(s)	51, 234, 261, 312, 354, 531, 551
HphI	GGTGA	1 cut(s)	103
Hpy166II	GTNNAC	2 cut(s)	226, 490
Hpy188I	TCNGA	2 cut(s)	20, 402
Hpy188III	TCNNGA	4 cut(s)	421, 551, 578, 663
Hpy8I	GTNNAC	2 cut(s)	226, 490
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	4 cut(s)	196, 356, 515, 708
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 41, 228, 634
HpyF3I	CTNAG	2 cut(s)	570, 591
Hsp92II	CATG	3 cut(s)	34, 346, 465
HspAI	GCGC	1 cut(s)	280
Kpn2I	TCCGGA	1 cut(s)	550
KspAI	GTTAAC	1 cut(s)	490
Kzo9I	GATC	3 cut(s)	152, 384, 447
LguI	GCTCTTC	1 cut(s)	311
LmnI	GCTCC	3 cut(s)	236, 365, 649
LpnPI	CCDG	9 cut(s)	64, 247, 274, 325, 367, 544, 564, 656, 683
Lsp1109I	GCAGC	2 cut(s)	203, 302
LweI	GCATC	1 cut(s)	556
MaeI	CTAG	1 cut(s)	14
MalI	GATC	3 cut(s)	154, 386, 449
MbiI	CCGCTC	3 cut(s)	166, 231, 304
MboI	GATC	3 cut(s)	152, 384, 447
MboII	GAAGA	5 cut(s)	298, 443, 451, 454, 457
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	1 cut(s)	612
MluI	ACGCGT	1 cut(s)	197
MroI	TCCGGA	1 cut(s)	550
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	2 cut(s)	255, 489
MslI	CAYNNNNRTG	2 cut(s)	29, 341
MspI	CCGG	7 cut(s)	51, 234, 261, 312, 354, 531, 551
MspR9I	CCNGG	4 cut(s)	312, 354, 531, 671
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	2 cut(s)	199, 222
MwoI	GCNNNNNNNGC	4 cut(s)	35, 41, 228, 634
NciI	CCSGG	3 cut(s)	312, 354, 531
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	3 cut(s)	152, 384, 447
NlaIII	CATG	3 cut(s)	34, 346, 465
NlaIV	GGNNCC	3 cut(s)	300, 367, 651
NmeAIII	GCCGAG	1 cut(s)	123
NspV	TTCGAA	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	311
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	2 cut(s)	554, 574
PinAI	ACCGGT	1 cut(s)	50
PkrI	GCNGC	8 cut(s)	37, 40, 43, 218, 221, 317, 359, 409
Psp6I	CCWGG	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	3 cut(s)	300, 367, 651
PspPI	GGNCC	1 cut(s)	298
PsuI	RGATCY	1 cut(s)	447
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	2 cut(s)	29, 341
SapI	GCTCTTC	1 cut(s)	311
SaqAI	TTAA	2 cut(s)	255, 489
SatI	GCNGC	8 cut(s)	36, 39, 42, 217, 220, 316, 358, 408
Sau3AI	GATC	3 cut(s)	152, 384, 447
Sau96I	GGNCC	1 cut(s)	298
ScrFI	CCNGG	4 cut(s)	312, 354, 531, 671
SduI	GDGCHC	1 cut(s)	670
SetI	ASST	6 cut(s)	104, 473, 519, 526, 626, 682
SfaNI	GCATC	1 cut(s)	556
SfuI	TTCGAA	1 cut(s)	266
SmiMI	CAYNNNNRTG	2 cut(s)	29, 341
SmlI	CTYRAG	1 cut(s)	661
SmoI	CTYRAG	1 cut(s)	661
Sse9I	AATT	1 cut(s)	612
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	4 cut(s)	310, 352, 529, 669
StyI	CCWWGG	1 cut(s)	30
TaqI	TCGA	4 cut(s)	151, 266, 387, 682
TaqII	GACCGA	1 cut(s)	305
TasI	AATT	1 cut(s)	612
TauI	GCSGC	6 cut(s)	38, 41, 44, 222, 360, 410
TfiI	GAWTC	2 cut(s)	554, 574
Tru1I	TTAA	2 cut(s)	255, 489
Tru9I	TTAA	2 cut(s)	255, 489
TseI	GCWGC	2 cut(s)	216, 315
TspGWI	ACGGA	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.