Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Reverse (-)

14844896 .. 14846359

Gene Structure 1464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGCGAAAACTCTATCCCGATCCACCGCCTCATGCGTCGCTAAGCGTTTCTTTTCCACCTCCAATGCCGTCGCCTCTCCTTCTCCGCTTCCTTCTCATCTCATCTCTCGTCGATTCTCACCGACGATCTTCCACGCCGTCGGATACATCCCAGCTTTGACCCGCTTCACAACGATCCGGACCCGGATGGATAGGTCTGGCGGCTCATATTCGCCGCTTAAATCCGGATCAAACTTCAGCGATCGACCACCCACTGAAATGGCACCTCTATTTCCTGGTTGCGATTACGAGCATTGGCTTATCGTCATGGAGAAGCCCGGAGGTGAAAATGCTCAGAAACAGCAAATGATCGATTGCTATGTTCAAACCCTAGCTAAAATTGTTGGCAGTGAGGAAGAGGCTAGAAAGAAGATCTATAATGTTTCGTGTGAGAGGTATTTTGGGTTTGGCTGTGAGATTGATGAGGAGACATCAAACAAACTCGAAGGACTTCCTGGTGTTCTGTTCGTGCTTCCGGACTCTTATGTTGATCCAGAGTTCAAAGATTACGGAGCTGAACTGTTTGTGAATGGAGAAGTAGTTCCTCGTCCACCAGAGAGACAGAGGAGGATGGTGGAGTTAACGAATCAAAGAGGGTCGGATAAACCAAAGTACCATGACCGAATCAGAAATGTCCGACGGAGGGAGAACATGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

26.37

Weight (kDa)

9.08

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	96 - 186	7.2e-41	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	262
AccIII	TCCGGA	3 cut(s)	177, 224, 514
AciI	CCGC	5 cut(s)	27, 86, 163, 201, 215
AclWI	GGATC	4 cut(s)	15, 169, 235, 524
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	1 cut(s)	682
AgsI	TTSAA	2 cut(s)	365, 541
AjnI	CCWGG	2 cut(s)	274, 493
AloI	GAACNNNNNNTCC	2 cut(s)	564, 596
AluBI	AGCT	3 cut(s)	155, 374, 554
AluI	AGCT	3 cut(s)	155, 374, 554
Alw26I	GTCTC	2 cut(s)	461, 592
AlwI	GGATC	4 cut(s)	15, 169, 235, 524
Aor13HI	TCCGGA	3 cut(s)	177, 224, 514
Asp700I	GAANNNNTTC	2 cut(s)	489, 579
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	2 cut(s)	184, 318
AsuHPI	GGTGA	2 cut(s)	111, 335
AvaII	GGWCC	1 cut(s)	180
BaeI	ACNNNNGTAYC	2 cut(s)	635, 668
BanI	GGYRCC	1 cut(s)	262
BccI	CCATC	2 cut(s)	181, 604
BceAI	ACGGC	2 cut(s)	53, 122
BciT130I	CCWGG	2 cut(s)	276, 495
BciVI	GTATCC	1 cut(s)	137
BcnI	CCSGG	2 cut(s)	184, 318
BcoDI	GTCTC	2 cut(s)	461, 592
BfaI	CTAG	2 cut(s)	371, 402
BfuI	GTATCC	1 cut(s)	137
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	2 cut(s)	202, 215
BlpI	GCTNAGC	1 cut(s)	42
BlsI	GCNGC	2 cut(s)	203, 216
Bme1390I	CCNGG	4 cut(s)	184, 276, 318, 495
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	182, 264
BmrFI	CCNGG	4 cut(s)	184, 276, 318, 495
Bpu1102I	GCTNAGC	1 cut(s)	42
BpuMI	CCSGG	2 cut(s)	184, 318
Bsa29I	ATCGAT	1 cut(s)	351
BsaWI	WCCGGW	3 cut(s)	177, 224, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	682
BseAI	TCCGGA	3 cut(s)	177, 224, 514
BseBI	CCWGG	2 cut(s)	276, 495
BseCI	ATCGAT	1 cut(s)	351
BseGI	GGATG	3 cut(s)	147, 192, 615
BseLI	CCNNNNNNNGG	1 cut(s)	682
BseMII	CTCAG	1 cut(s)	347
BseRI	GAGGAG	2 cut(s)	479, 619
BseYI	CCCAGC	1 cut(s)	151
Bsh1285I	CGRYCG	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	351
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	5 cut(s)	178, 184, 225, 318, 515
BslI	CCNNNNNNNGG	1 cut(s)	682
BsmAI	GTCTC	2 cut(s)	461, 592
Bsp13I	TCCGGA	3 cut(s)	177, 224, 514
Bsp143I	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
Bsp1720I	GCTNAGC	1 cut(s)	42
BspACI	CCGC	5 cut(s)	27, 86, 163, 201, 215
BspCNI	CTCAG	1 cut(s)	346
BspDI	ATCGAT	1 cut(s)	351
BspEI	TCCGGA	3 cut(s)	177, 224, 514
BspLI	GGNNCC	2 cut(s)	182, 264
BspPI	GGATC	4 cut(s)	15, 169, 235, 524
BspT107I	GGYRCC	1 cut(s)	262
BssMI	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
Bst2UI	CCWGG	2 cut(s)	276, 495
Bst4CI	ACNGT	1 cut(s)	561
Bst6I	CTCTTC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	42, 333
BstF5I	GGATG	3 cut(s)	147, 192, 615
BstKTI	GATC	8 cut(s)	23, 129, 177, 230, 244, 351, 414, 532
BstMAI	GTCTC	2 cut(s)	461, 592
BstMBI	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
BstMCI	CGRYCG	1 cut(s)	244
BstNI	CCWGG	2 cut(s)	276, 495
BstNSI	RCATGY	1 cut(s)	694
BstSCI	CCNGG	4 cut(s)	182, 274, 316, 493
BstX2I	RGATCY	1 cut(s)	411
BstXI	CCANNNNNNTGG	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	411
Bsu15I	ATCGAT	1 cut(s)	351
BsuI	GTATCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	351
BtsCI	GGATG	3 cut(s)	147, 192, 615
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	252, 394
Cfr13I	GGNCC	1 cut(s)	180
ClaI	ATCGAT	1 cut(s)	351
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	4 cut(s)	33, 307, 656, 691
CviJI	RGCY	8 cut(s)	155, 204, 298, 316, 374, 401, 450, 554
CviKI_1	RGCY	8 cut(s)	155, 204, 298, 316, 374, 401, 450, 554
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	2 cut(s)	42, 333
DpnI	GATC	8 cut(s)	22, 128, 176, 229, 243, 350, 413, 531
DpnII	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco47I	GGWCC	1 cut(s)	180
Eco57I	CTGAAG	1 cut(s)	220
EcoRII	CCWGG	2 cut(s)	274, 493
FaeI	CATG	4 cut(s)	36, 310, 659, 694
FaiI	YATR	8 cut(s)	34, 208, 308, 360, 417, 525, 657, 692
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FatI	CATG	4 cut(s)	32, 306, 655, 690
FauI	CCCGC	1 cut(s)	170
Fnu4HI	GCNGC	2 cut(s)	202, 215
FokI	GGATG	3 cut(s)	134, 199, 622
Fsp4HI	GCNGC	2 cut(s)	202, 215
FspBI	CTAG	2 cut(s)	371, 402
GluI	GCNGC	2 cut(s)	202, 215
GsaI	CCCAGC	1 cut(s)	155
HapII	CCGG	5 cut(s)	178, 184, 225, 318, 515
HgaI	GACGC	1 cut(s)	25
Hin1II	CATG	4 cut(s)	36, 310, 659, 694
HincII	GTYRAC	1 cut(s)	621
HindII	GTYRAC	1 cut(s)	621
HinfI	GANTC	4 cut(s)	114, 518, 625, 663
HpaI	GTTAAC	1 cut(s)	621
HpaII	CCGG	5 cut(s)	178, 184, 225, 318, 515
HphI	GGTGA	2 cut(s)	111, 335
Hpy166II	GTNNAC	2 cut(s)	590, 621
Hpy188I	TCNGA	5 cut(s)	143, 336, 640, 668, 677
Hpy188III	TCNNGA	5 cut(s)	18, 178, 225, 515, 533
Hpy8I	GTNNAC	2 cut(s)	590, 621
Hpy99I	CGWCG	6 cut(s)	41, 74, 114, 127, 143, 681
HpyAV	CCTTC	3 cut(s)	90, 102, 479
HpyCH4III	ACNGT	1 cut(s)	561
HpyF3I	CTNAG	2 cut(s)	42, 333
Hsp92II	CATG	4 cut(s)	36, 310, 659, 694
Kpn2I	TCCGGA	3 cut(s)	177, 224, 514
KspAI	GTTAAC	1 cut(s)	621
Kzo9I	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
LmnI	GCTCC	1 cut(s)	551
MaeI	CTAG	2 cut(s)	371, 402
MalI	GATC	8 cut(s)	22, 128, 176, 229, 243, 350, 413, 531
MboI	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
MboII	GAAGA	3 cut(s)	121, 407, 421
MflI	RGATCY	1 cut(s)	411
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	2 cut(s)	121, 618
MroI	TCCGGA	3 cut(s)	177, 224, 514
MroXI	GAANNNNTTC	2 cut(s)	489, 579
MseI	TTAA	2 cut(s)	219, 620
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	5 cut(s)	178, 184, 225, 318, 515
MspR9I	CCNGG	4 cut(s)	184, 276, 318, 495
MvaI	CCWGG	2 cut(s)	276, 495
NciI	CCSGG	2 cut(s)	184, 318
NdeII	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
NlaIII	CATG	4 cut(s)	36, 310, 659, 694
NlaIV	GGNNCC	2 cut(s)	182, 264
NspI	RCATGY	1 cut(s)	694
PdmI	GAANNNNTTC	2 cut(s)	489, 579
PfeI	GAWTC	3 cut(s)	114, 625, 663
PkrI	GCNGC	2 cut(s)	203, 216
Ple19I	CGATCG	1 cut(s)	244
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
Psp6I	CCWGG	2 cut(s)	274, 493
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	274, 493
PspN4I	GGNNCC	2 cut(s)	182, 264
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	411
PvuI	CGATCG	1 cut(s)	244
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	2 cut(s)	219, 620
SatI	GCNGC	2 cut(s)	202, 215
Sau3AI	GATC	8 cut(s)	20, 126, 174, 227, 241, 348, 411, 529
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	4 cut(s)	184, 276, 318, 495
SetI	ASST	8 cut(s)	62, 157, 197, 268, 325, 376, 437, 556
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	5 cut(s)	27, 86, 163, 201, 215
SspMI	CTAG	2 cut(s)	371, 402
StyD4I	CCNGG	4 cut(s)	182, 274, 316, 493
TaaI	ACNGT	1 cut(s)	561
TaqI	TCGA	4 cut(s)	112, 244, 351, 483
TaqII	GACCGA	1 cut(s)	675
TasI	AATT	1 cut(s)	378
TauI	GCSGC	2 cut(s)	204, 217
TfiI	GAWTC	3 cut(s)	114, 625, 663
Tru1I	TTAA	2 cut(s)	219, 620
Tru9I	TTAA	2 cut(s)	219, 620
TscAI	CASTG	2 cut(s)	259, 394
TspGWI	ACGGA	2 cut(s)	564, 694
TspRI	CASTG	2 cut(s)	259, 394
VpaK11BI	GGWCC	1 cut(s)	180
XceI	RCATGY	1 cut(s)	694
XmnI	GAANNNNTTC	2 cut(s)	489, 579
XspI	CTAG	2 cut(s)	371, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.