Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011905

Physical Location & Seq

Genomic Coordinates Reverse (-)

22500083 .. 22502837

Gene Structure 2755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1223900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTTCAAACCCTAGTCCGAGCAATTGCCATGGCCGCCGCCACCACCACCGCAACCGCTCGCCACCCCACAATCTCTCTCCTCATACCCAAATGCCTCTTCTCCACTTCCAGACTCACCCAACCTCTCTCCATCCCATCCCTCATGCTCGGCCGTCGATCCCTCGCCCCTCTTTCCCACGCCGTCCGATTCCCTACCGCCACCACCCGATACACTCCGATCCGCTGCCGGGTCAACCGCTCTGGCGGTTCTTACTCGCCCCTTAACTCAGGTTCCAACTTCAGCGACCGTCCACCCACTGAAATGGCACCGCTATTTCCTGGCTGTGACTACGAGCACTGGCTCATCGTCATGGATAAGCCCGGTGGGGAGGGTGCTACAAAGCAGCAGATGATCGATTGCTATGTTCAGACCCTGGCTAAAGTTGTTGGGAGTGAGGAAGAAGCAAAGAAGAAGATATACAATGTGTCATGCGAGAGGTATTTTGGTTTTGGTTGTGAGATTGATGAGGAGACCTCAAATAGGCTTGAAGGCTTGCCCGGTGTTCTTTTTATTCTTCCGGATTCGTATGTTGATCCTGAATTCAAAGACTACGGTGCTGAGTTGTTTGTGAACGGAGAAATTGTTCAGAGGTCGCCAGAAAGGCAGAGGAGGGTGGAGCCACAGCCGTCAAGAGCTCAGGACAGACCAAGGTACAATGATAGAACCCGTTACGTGCGCCGGAGGGAAAATGCCCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:1900864 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.74

Weight (kDa)

9.18

Isoelectric Point (pI)

50.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MORF_dom	PF21864	111 - 201	2.9e-40	Multiple organellar RNA editing factor 1, MORF domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32580 AT2G35240
fragaria_vesca	FvH4_7g07460
malus_domestica	MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica	Prupe.1G045300_v2.0.a1
pyrus_communis	pycom13g19350 pycom17g21670
rosa_chinensis	RchiOBHm_Chr7g0223791
rosa_laevigata	RLG00000001946
rosa_multiflora	Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii	Rroxscaffold_3G00235330
rosa_rugosa	Rorug07G0219600
rosa_samantha	Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana	Rw7G030820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccBSI	CCGCTC	2 cut(s)	59, 240
AccIII	TCCGGA	1 cut(s)	559
AciI	CCGC	9 cut(s)	36, 39, 51, 57, 198, 223, 238, 246, 311
AclWI	GGATC	3 cut(s)	153, 214, 569
AcoI	YGGCCR	2 cut(s)	33, 151
AcsI	RAATTY	1 cut(s)	581
AcuI	CTGAAG	1 cut(s)	265
AfaI	GTAC	1 cut(s)	695
AfiI	CCNNNNNNNGG	2 cut(s)	229, 522
AgsI	TTSAA	3 cut(s)	8, 530, 586
AjnI	CCWGG	2 cut(s)	319, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	609, 641
AluBI	AGCT	1 cut(s)	677
AluI	AGCT	1 cut(s)	677
Alw21I	GWGCWC	2 cut(s)	339, 679
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	3 cut(s)	153, 214, 569
AlwNI	CAGNNNCTG	1 cut(s)	415
Aor13HI	TCCGGA	1 cut(s)	559
AoxI	GGCC	2 cut(s)	33, 151
ApeKI	GCWGC	2 cut(s)	225, 385
ApoI	RAATTY	1 cut(s)	581
Asp700I	GAANNNNTTC	1 cut(s)	624
AspLEI	GCGC	1 cut(s)	720
AsuC2I	CCSGG	4 cut(s)	230, 363, 540, 736
AsuHPI	GGTGA	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	1 cut(s)	679
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
Bbv12I	GWGCWC	2 cut(s)	339, 679
BbvI	GCAGC	2 cut(s)	212, 397
BccI	CCATC	2 cut(s)	140, 145
BceAI	ACGGC	3 cut(s)	138, 167, 652
BciT130I	CCWGG	2 cut(s)	321, 416
BcnI	CCSGG	4 cut(s)	230, 363, 540, 736
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	1 cut(s)	14
BglI	GCCNNNNNGGC	1 cut(s)	643
BisI	GCNGC	4 cut(s)	36, 39, 226, 386
BlsI	GCNGC	4 cut(s)	37, 40, 227, 387
Bme1390I	CCNGG	6 cut(s)	230, 321, 363, 416, 540, 736
BmiI	GGNNCC	3 cut(s)	274, 309, 660
BmrFI	CCNGG	6 cut(s)	230, 321, 363, 416, 540, 736
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
Bpu10I	CCTNAGC	1 cut(s)	678
BpuMI	CCSGG	4 cut(s)	230, 363, 540, 736
Bsa29I	ATCGAT	1 cut(s)	396
BsaAI	YACGTR	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	506
BsaJI	CCNNGG	3 cut(s)	30, 414, 689
BsaWI	WCCGGW	1 cut(s)	559
BsaXI	ACNNNNNCTCC	2 cut(s)	609, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 522
Bse1I	ACTGG	1 cut(s)	344
BseAI	TCCGGA	1 cut(s)	559
BseBI	CCWGG	2 cut(s)	321, 416
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	3 cut(s)	30, 414, 689
BseGI	GGATG	2 cut(s)	132, 137
BseLI	CCNNNNNNNGG	2 cut(s)	229, 522
BseMII	CTCAG	3 cut(s)	282, 591, 692
BseNI	ACTGG	1 cut(s)	344
BseRI	GAGGAG	3 cut(s)	71, 524, 664
BseX3I	CGGCCG	1 cut(s)	151
BseXI	GCAGC	2 cut(s)	212, 397
Bsh1285I	CGRYCG	2 cut(s)	154, 289
BshFI	GGCC	2 cut(s)	35, 153
BshNI	GGYRCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	396
BsiEI	CGRYCG	2 cut(s)	154, 289
BsiHKAI	GWGCWC	2 cut(s)	339, 679
BsiSI	CCGG	6 cut(s)	229, 363, 540, 560, 721, 736
BslI	CCNNNNNNNGG	2 cut(s)	229, 522
BsmAI	GTCTC	1 cut(s)	506
BsnI	GGCC	2 cut(s)	35, 153
Bso31I	GGTCTC	1 cut(s)	506
Bsp1286I	GDGCHC	2 cut(s)	339, 679
Bsp13I	TCCGGA	1 cut(s)	559
Bsp143I	GATC	4 cut(s)	158, 219, 393, 574
Bsp19I	CCATGG	1 cut(s)	30
BspACI	CCGC	9 cut(s)	36, 39, 51, 57, 198, 223, 238, 246, 311
BspANI	GGCC	2 cut(s)	35, 153
BspCNI	CTCAG	3 cut(s)	281, 592, 691
BspDI	ATCGAT	1 cut(s)	396
BspEI	TCCGGA	1 cut(s)	559
BspLI	GGNNCC	3 cut(s)	274, 309, 660
BspPI	GGATC	3 cut(s)	153, 214, 569
BspT107I	GGYRCC	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	506
BsrBI	CCGCTC	2 cut(s)	59, 240
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	30, 414, 689
BssMI	GATC	4 cut(s)	158, 219, 393, 574
BssT1I	CCWWGG	2 cut(s)	30, 689
Bst2UI	CCWGG	2 cut(s)	321, 416
Bst4CI	ACNGT	2 cut(s)	290, 596
Bst6I	CTCTTC	1 cut(s)	104
BstBAI	YACGTR	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	61, 536
BstDEI	CTNAG	3 cut(s)	268, 600, 678
BstDSI	CCRYGG	1 cut(s)	30
BstENI	CCTNNNNNAGG	1 cut(s)	520
BstF5I	GGATG	2 cut(s)	132, 137
BstHHI	GCGC	1 cut(s)	720
BstKTI	GATC	4 cut(s)	161, 222, 396, 577
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	4 cut(s)	158, 219, 393, 574
BstMCI	CGRYCG	2 cut(s)	154, 289
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 643
BstNI	CCWGG	2 cut(s)	321, 416
BstSCI	CCNGG	6 cut(s)	228, 319, 361, 414, 538, 734
BstV1I	GCAGC	2 cut(s)	212, 397
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstZI	CGGCCG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	2 cut(s)	35, 153
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	30
BtsCI	GGATG	2 cut(s)	132, 137
BtsIMutI	CAGTG	2 cut(s)	297, 337
Cac8I	GCNNGC	2 cut(s)	61, 536
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	1 cut(s)	720
ClaI	ATCGAT	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	694
CviAII	CATG	4 cut(s)	31, 145, 352, 471
CviQI	GTAC	1 cut(s)	694
DdeI	CTNAG	3 cut(s)	268, 600, 678
DpnI	GATC	4 cut(s)	160, 221, 395, 576
DpnII	GATC	4 cut(s)	158, 219, 393, 574
EaeI	YGGCCR	2 cut(s)	33, 151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	677
EclXI	CGGCCG	1 cut(s)	151
Eco130I	CCWWGG	2 cut(s)	30, 689
Eco24I	GRGCYC	1 cut(s)	679
Eco31I	GGTCTC	1 cut(s)	506
Eco52I	CGGCCG	1 cut(s)	151
Eco53kI	GAGCTC	1 cut(s)	677
Eco57I	CTGAAG	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	677
EcoNI	CCTNNNNNAGG	1 cut(s)	520
EcoRI	GAATTC	1 cut(s)	581
EcoRII	CCWGG	2 cut(s)	319, 414
EcoT14I	CCWWGG	2 cut(s)	30, 689
EcoT38I	GRGCYC	1 cut(s)	679
ErhI	CCWWGG	2 cut(s)	30, 689
FaeI	CATG	4 cut(s)	34, 148, 355, 474
FaiI	YATR	8 cut(s)	32, 86, 146, 353, 405, 460, 472, 570
FatI	CATG	4 cut(s)	30, 144, 351, 470
Fnu4HI	GCNGC	4 cut(s)	36, 39, 226, 386
FokI	GGATG	2 cut(s)	119, 124
FriOI	GRGCYC	1 cut(s)	679
Fsp4HI	GCNGC	4 cut(s)	36, 39, 226, 386
FspBI	CTAG	1 cut(s)	14
GlaI	GCGC	1 cut(s)	719
GluI	GCNGC	4 cut(s)	36, 39, 226, 386
HaeIII	GGCC	2 cut(s)	35, 153
HapII	CCGG	6 cut(s)	229, 363, 540, 560, 721, 736
HhaI	GCGC	1 cut(s)	720
Hin1II	CATG	4 cut(s)	34, 148, 355, 474
Hin6I	GCGC	1 cut(s)	718
HinP1I	GCGC	1 cut(s)	718
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	114, 189, 563
HpaII	CCGG	6 cut(s)	229, 363, 540, 560, 721, 736
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	3 cut(s)	235, 293, 613
Hpy188I	TCNGA	5 cut(s)	20, 188, 219, 411, 630
Hpy188III	TCNNGA	5 cut(s)	111, 560, 578, 672, 680
Hpy8I	GTNNAC	3 cut(s)	235, 293, 613
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	1 cut(s)	524
HpyCH4III	ACNGT	2 cut(s)	290, 596
HpyCH4IV	ACGT	1 cut(s)	714
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 643
HpyF3I	CTNAG	3 cut(s)	268, 600, 678
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	4 cut(s)	34, 148, 355, 474
HspAI	GCGC	1 cut(s)	718
Kpn2I	TCCGGA	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	158, 219, 393, 574
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	212, 397
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	2 cut(s)	326, 710
MalI	GATC	4 cut(s)	160, 221, 395, 576
MbiI	CCGCTC	2 cut(s)	59, 240
MboI	GATC	4 cut(s)	158, 219, 393, 574
MboII	GAAGA	5 cut(s)	91, 452, 463, 466, 548
MfeI	CAATTG	1 cut(s)	24
MhlI	GDGCHC	2 cut(s)	339, 679
MluCI	AATT	3 cut(s)	24, 581, 621
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	300
MroI	TCCGGA	1 cut(s)	559
MroXI	GAANNNNTTC	1 cut(s)	624
MseI	TTAA	1 cut(s)	264
MslI	CAYNNNNRTG	2 cut(s)	302, 350
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	6 cut(s)	229, 363, 540, 560, 721, 736
MspR9I	CCNGG	6 cut(s)	230, 321, 363, 416, 540, 736
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	321, 416
MwoI	GCNNNNNNNGC	2 cut(s)	35, 643
NciI	CCSGG	4 cut(s)	230, 363, 540, 736
NcoI	CCATGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	158, 219, 393, 574
NlaIII	CATG	4 cut(s)	34, 148, 355, 474
NlaIV	GGNNCC	3 cut(s)	274, 309, 660
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	189, 563
PkrI	GCNGC	4 cut(s)	37, 40, 227, 387
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
Ppu21I	YACGTR	1 cut(s)	715
Psp124BI	GAGCTC	1 cut(s)	679
Psp6I	CCWGG	2 cut(s)	319, 414
PspGI	CCWGG	2 cut(s)	319, 414
PspN4I	GGNNCC	3 cut(s)	274, 309, 660
PstNI	CAGNNNCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	695
RsaNI	GTAC	1 cut(s)	694
RseI	CAYNNNNRTG	2 cut(s)	302, 350
SacI	GAGCTC	1 cut(s)	679
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	4 cut(s)	36, 39, 226, 386
Sau3AI	GATC	4 cut(s)	158, 219, 393, 574
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	6 cut(s)	230, 321, 363, 416, 540, 736
SduI	GDGCHC	2 cut(s)	339, 679
SetI	ASST	8 cut(s)	127, 274, 482, 518, 635, 679, 695, 717
SmiMI	CAYNNNNRTG	2 cut(s)	302, 350
Sse9I	AATT	3 cut(s)	24, 581, 621
SsiI	CCGC	9 cut(s)	36, 39, 51, 57, 198, 223, 238, 246, 311
SspMI	CTAG	1 cut(s)	14
SstI	GAGCTC	1 cut(s)	679
StyD4I	CCNGG	6 cut(s)	228, 319, 361, 414, 538, 734
StyI	CCWWGG	2 cut(s)	30, 689
TaaI	ACNGT	2 cut(s)	290, 596
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	2 cut(s)	157, 396
TasI	AATT	3 cut(s)	24, 581, 621
TauI	GCSGC	2 cut(s)	38, 41
TfiI	GAWTC	2 cut(s)	189, 563
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	2 cut(s)	304, 344
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	225, 385
Tsp45I	GTSAC	1 cut(s)	326
TspGWI	ACGGA	1 cut(s)	630
TspRI	CASTG	2 cut(s)	304, 344
XagI	CCTNNNNNAGG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	581
XmnI	GAANNNNTTC	1 cut(s)	624
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.