Prupe.1G045300_v2.0.a1

DAG protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011905
Physical Location & Seq
Reverse (-)
3237234 .. 3240406
3173 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G045300.1

Sequence Viewer

Length: 744 bp
ATGGTTCAAACCCTAGTCCGAGCCATTGCCATGGCCGCCGCCGCAACCACCACCACCGCCTCTCGCCACTCCGCAATCTCTCTCCTCGTACCCAAACGTCTCTTCTCCACATCCAGACTCACCCAGCCTCCCTCCGTCCCATCTCTTATACTCGGCCGTCGCTCTCTGGCCCCTCTCTCGCATGCCGTCCGATTACCCACCGCCACCACCCGGTACACTCCGATCCGCTGCCGGGTGAACCGCTCCGGCGGTTCTTACTCGCCCCTTAACTCCGGTTCAAACTTCAGTGACCGTCCACCCACTGAAATGGCCCCGCTTTTCCCGGGATGCGACTATGAGCACTGGCTCATAGTCATGGACAAGCCTGGAGGTGAGGGTGCTACAAAGCAGCAGATGATCGATTGCTATGTTCAGACCCTGGCTAAAATCCTTGGGAGCGAGGAAGAAGCGAAGAAGAAAATTTACAATGTGTCCTGCGAGAGGTATTTTGGTTTTGGTTGTGAGATTGACGAGGAGACCTCGAATAAGCTCGAAGGCATGCCTGGTGTTCTTTTTGTGCTTCCGGATTCATATGTTGATCCCGAATATAAAGACTACGGGGCTGAGTTATTTGTGAATGGAGAAATTGTTCAAAGGTCGCCTGAAAGGCAGAGGAGGGTGGAGCCACAGCCCTCGAGAGCTCAGGACAGACCAAGATACAATGACAGAACCCGATATGTGCGCCGAAGGGAAAATGTGCGGTAA

Protein Analysis

248

Amino Acids

27.79

Weight (kDa)

9.33

Isoelectric Point (pI)

58.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32580 AT2G35240
fragaria_vesca FvH4_7g07460
malus_domestica MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica Prupe.1G045300_v2.0.a1
pyrus_communis pycom13g19350 pycom17g21670
rosa_chinensis RchiOBHm_Chr7g0223791
rosa_laevigata RLG00000001946
rosa_multiflora Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii Rroxscaffold_3G00235330
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana Rw7G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 243
AccIII TCCGGA 1 cut(s) 562
AclWI GGATC 2 cut(s) 217, 572
AcoI YGGCCR 2 cut(s) 33, 154
AcsI RAATTY 1 cut(s) 459
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 2 cut(s) 90, 215
AfiI CCNNNNNNNGG 3 cut(s) 210, 232, 480
AgsI TTSAA 3 cut(s) 8, 279, 632
AjnI CCWGG 3 cut(s) 364, 417, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 86, 118
AloI GAACNNNNNNTCC 2 cut(s) 612, 644
AluBI AGCT 2 cut(s) 529, 680
AluI AGCT 2 cut(s) 529, 680
Alw21I GWGCWC 2 cut(s) 342, 682
Alw26I GTCTC 2 cut(s) 104, 509
AlwI GGATC 2 cut(s) 217, 572
AlwNI CAGNNNCTG 1 cut(s) 418
Ama87I CYCGRG 2 cut(s) 322, 673
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 4 cut(s) 33, 154, 168, 309
ApeKI GCWGC 2 cut(s) 228, 388
ApoI RAATTY 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 1 cut(s) 723
AspS9I GGNCC 2 cut(s) 169, 310
AsuC2I CCSGG 4 cut(s) 211, 233, 323, 324
AsuHPI GGTGA 3 cut(s) 112, 247, 383
AvaI CYCGRG 2 cut(s) 322, 673
BanII GRGCYC 1 cut(s) 682
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
Bbv12I GWGCWC 2 cut(s) 342, 682
BbvI GCAGC 2 cut(s) 215, 400
BccI CCATC 1 cut(s) 148
BceAI ACGGC 2 cut(s) 141, 170
BciT130I CCWGG 3 cut(s) 366, 419, 543
BcnI CCSGG 4 cut(s) 211, 233, 323, 324
BcoDI GTCTC 2 cut(s) 104, 509
BfaI CTAG 1 cut(s) 14
BglI GCCNNNNNGGC 1 cut(s) 646
BisI GCNGC 5 cut(s) 36, 39, 42, 229, 389
BlsI GCNGC 5 cut(s) 37, 40, 43, 230, 390
Bme1390I CCNGG 7 cut(s) 211, 233, 323, 324, 366, 419, 543
BmeT110I CYCGRG 2 cut(s) 322, 673
BmgT120I GGNCC 2 cut(s) 169, 310
BmiI GGNNCC 3 cut(s) 171, 312, 663
BmrFI CCNGG 7 cut(s) 211, 233, 323, 324, 366, 419, 543
BmsI GCATC 1 cut(s) 317
BplI GAGNNNNNCTC 2 cut(s) 503, 535
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 681
BpuMI CCSGG 4 cut(s) 211, 233, 323, 324
Bsa29I ATCGAT 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 509
BsaJI CCNNGG 4 cut(s) 30, 322, 417, 430
BsaWI WCCGGW 2 cut(s) 272, 562
BsaXI ACNNNNNCTCC 4 cut(s) 112, 142, 612, 642
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 232, 480
Bse1I ACTGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 3 cut(s) 366, 419, 543
BseCI ATCGAT 1 cut(s) 399
BseDI CCNNGG 4 cut(s) 30, 322, 417, 430
BseGI GGATG 2 cut(s) 110, 332
BseLI CCNNNNNNNGG 3 cut(s) 210, 232, 480
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 594, 695
BseNI ACTGG 1 cut(s) 347
BseRI GAGGAG 3 cut(s) 74, 527, 667
BseX3I CGGCCG 1 cut(s) 154
BseXI GCAGC 2 cut(s) 215, 400
BseYI CCCAGC 1 cut(s) 123
Bsh1285I CGRYCG 1 cut(s) 157
BshFI GGCC 4 cut(s) 35, 156, 170, 311
BshVI ATCGAT 1 cut(s) 399
BsiEI CGRYCG 1 cut(s) 157
BsiHKAI GWGCWC 2 cut(s) 342, 682
BsiHKCI CYCGRG 2 cut(s) 322, 673
BsiSI CCGG 6 cut(s) 211, 232, 246, 273, 323, 563
BslFI GGGAC 1 cut(s) 122
BslI CCNNNNNNNGG 3 cut(s) 210, 232, 480
BsmAI GTCTC 2 cut(s) 104, 509
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 122
BsnI GGCC 4 cut(s) 35, 156, 170, 311
Bso31I GGTCTC 1 cut(s) 509
BsoBI CYCGRG 2 cut(s) 322, 673
Bsp1286I GDGCHC 2 cut(s) 342, 682
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 3 cut(s) 222, 396, 577
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 4 cut(s) 35, 156, 170, 311
BspCNI CTCAG 2 cut(s) 595, 694
BspDI ATCGAT 1 cut(s) 399
BspEI TCCGGA 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 171, 312, 663
BspPI GGATC 2 cut(s) 217, 572
BspTNI GGTCTC 1 cut(s) 509
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 24
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 30, 322, 417, 430
BssMI GATC 3 cut(s) 222, 396, 577
BssT1I CCWWGG 2 cut(s) 30, 430
Bst2UI CCWGG 3 cut(s) 366, 419, 543
Bst4CI ACNGT 1 cut(s) 293
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 2 cut(s) 183, 539
BstDEI CTNAG 2 cut(s) 603, 681
BstDSI CCRYGG 1 cut(s) 30
BstENI CCTNNNNNAGG 1 cut(s) 478
BstF5I GGATG 2 cut(s) 110, 332
BstHHI GCGC 1 cut(s) 723
BstKTI GATC 3 cut(s) 225, 399, 580
BstMAI GTCTC 2 cut(s) 104, 509
BstMBI GATC 3 cut(s) 222, 396, 577
BstMCI CGRYCG 1 cut(s) 157
BstMWI GCNNNNNNNGC 3 cut(s) 35, 41, 646
BstNI CCWGG 3 cut(s) 366, 419, 543
BstNSI RCATGY 2 cut(s) 185, 541
BstSCI CCNGG 7 cut(s) 209, 231, 321, 322, 364, 417, 541
BstV1I GCAGC 2 cut(s) 215, 400
BstXI CCANNNNNNTGG 2 cut(s) 31, 307
BstZI CGGCCG 1 cut(s) 154
Bsu15I ATCGAT 1 cut(s) 399
BsuRI GGCC 4 cut(s) 35, 156, 170, 311
BsuTUI ATCGAT 1 cut(s) 399
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 110, 332
BtsIMutI CAGTG 3 cut(s) 292, 300, 340
Cac8I GCNNGC 2 cut(s) 183, 539
CaiI CAGNNNCTG 1 cut(s) 418
CfoI GCGC 1 cut(s) 723
Cfr13I GGNCC 2 cut(s) 169, 310
Cfr9I CCCGGG 1 cut(s) 322
ClaI ATCGAT 1 cut(s) 399
Csp6I GTAC 2 cut(s) 89, 214
CviAII CATG 4 cut(s) 31, 182, 355, 538
CviQI GTAC 2 cut(s) 89, 214
DdeI CTNAG 2 cut(s) 603, 681
DpnI GATC 3 cut(s) 224, 398, 579
DpnII GATC 3 cut(s) 222, 396, 577
EaeI YGGCCR 2 cut(s) 33, 154
EagI CGGCCG 1 cut(s) 154
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Ecl136II GAGCTC 1 cut(s) 680
EclXI CGGCCG 1 cut(s) 154
Eco130I CCWWGG 2 cut(s) 30, 430
Eco24I GRGCYC 1 cut(s) 682
Eco31I GGTCTC 1 cut(s) 509
Eco52I CGGCCG 1 cut(s) 154
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 268
Eco88I CYCGRG 2 cut(s) 322, 673
EcoICRI GAGCTC 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 478
EcoRII CCWGG 3 cut(s) 364, 417, 541
EcoT14I CCWWGG 2 cut(s) 30, 430
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 2 cut(s) 30, 430
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 4 cut(s) 34, 185, 358, 541
FaqI GGGAC 1 cut(s) 122
FatI CATG 4 cut(s) 30, 181, 354, 537
FauI CCCGC 1 cut(s) 321
FauNDI CATATG 1 cut(s) 571
Fnu4HI GCNGC 5 cut(s) 36, 39, 42, 229, 389
FokI GGATG 2 cut(s) 97, 339
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 5 cut(s) 36, 39, 42, 229, 389
FspBI CTAG 1 cut(s) 14
GlaI GCGC 1 cut(s) 722
GluI GCNGC 5 cut(s) 36, 39, 42, 229, 389
GsaI CCCAGC 1 cut(s) 127
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 4 cut(s) 35, 156, 170, 311
HapII CCGG 6 cut(s) 211, 232, 246, 273, 323, 563
HhaI GCGC 1 cut(s) 723
Hin1II CATG 4 cut(s) 34, 185, 358, 541
Hin6I GCGC 1 cut(s) 721
HinP1I GCGC 1 cut(s) 721
HinfI GANTC 2 cut(s) 117, 566
HpaII CCGG 6 cut(s) 211, 232, 246, 273, 323, 563
HphI GGTGA 3 cut(s) 112, 247, 383
Hpy166II GTNNAC 3 cut(s) 216, 238, 296
Hpy188I TCNGA 4 cut(s) 20, 191, 222, 414
Hpy188III TCNNGA 5 cut(s) 114, 563, 581, 675, 683
Hpy8I GTNNAC 3 cut(s) 216, 238, 296
Hpy99I CGWCG 1 cut(s) 162
HpyAV CCTTC 2 cut(s) 527, 720
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 97
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 41, 646
HpyF3I CTNAG 2 cut(s) 603, 681
HpySE526I ACGT 1 cut(s) 97
Hsp92II CATG 4 cut(s) 34, 185, 358, 541
HspAI GCGC 1 cut(s) 721
Kpn2I TCCGGA 1 cut(s) 562
Kzo9I GATC 3 cut(s) 222, 396, 577
LmnI GCTCC 3 cut(s) 248, 435, 661
Lsp1109I GCAGC 2 cut(s) 215, 400
LweI GCATC 1 cut(s) 317
MaeI CTAG 1 cut(s) 14
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 224, 398, 579
MbiI CCGCTC 1 cut(s) 243
MboI GATC 3 cut(s) 222, 396, 577
MboII GAAGA 4 cut(s) 94, 455, 463, 466
MhlI GDGCHC 2 cut(s) 342, 682
MluCI AATT 2 cut(s) 459, 624
MlyI GAGTC 1 cut(s) 111
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 1 cut(s) 267
MslI CAYNNNNRTG 3 cut(s) 29, 305, 353
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 6 cut(s) 211, 232, 246, 273, 323, 563
MspR9I CCNGG 7 cut(s) 211, 233, 323, 324, 366, 419, 543
MvaI CCWGG 3 cut(s) 366, 419, 543
MwoI GCNNNNNNNGC 3 cut(s) 35, 41, 646
NciI CCSGG 4 cut(s) 211, 233, 323, 324
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 571
NdeII GATC 3 cut(s) 222, 396, 577
NlaIII CATG 4 cut(s) 34, 185, 358, 541
NlaIV GGNNCC 3 cut(s) 171, 312, 663
NmeAIII GCCGAG 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 2 cut(s) 185, 541
PaeI GCATGC 2 cut(s) 185, 541
PaeR7I CTCGAG 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 5 cut(s) 37, 40, 43, 230, 390
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 682
Psp6I CCWGG 3 cut(s) 364, 417, 541
PspFI CCCAGC 1 cut(s) 123
PspGI CCWGG 3 cut(s) 364, 417, 541
PspN4I GGNNCC 3 cut(s) 171, 312, 663
PspPI GGNCC 2 cut(s) 169, 310
PstNI CAGNNNCTG 1 cut(s) 418
RsaI GTAC 2 cut(s) 90, 215
RsaNI GTAC 2 cut(s) 89, 214
RseI CAYNNNNRTG 3 cut(s) 29, 305, 353
SacI GAGCTC 1 cut(s) 682
SaqAI TTAA 1 cut(s) 267
SatI GCNGC 5 cut(s) 36, 39, 42, 229, 389
Sau3AI GATC 3 cut(s) 222, 396, 577
Sau96I GGNCC 2 cut(s) 169, 310
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 7 cut(s) 211, 233, 323, 324, 366, 419, 543
SduI GDGCHC 2 cut(s) 342, 682
SetI ASST 7 cut(s) 100, 373, 485, 521, 531, 638, 682
SfaNI GCATC 1 cut(s) 317
Sfr274I CTCGAG 1 cut(s) 673
SlaI CTCGAG 1 cut(s) 673
SmaI CCCGGG 1 cut(s) 324
SmiMI CAYNNNNRTG 3 cut(s) 29, 305, 353
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
SphI GCATGC 2 cut(s) 185, 541
Sse9I AATT 2 cut(s) 459, 624
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 7 cut(s) 209, 231, 321, 322, 364, 417, 541
StyI CCWWGG 2 cut(s) 30, 430
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 399, 521, 531, 674
TasI AATT 2 cut(s) 459, 624
TauI GCSGC 3 cut(s) 38, 41, 44
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 267
Tru9I TTAA 1 cut(s) 267
TscAI CASTG 3 cut(s) 292, 307, 347
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 2 cut(s) 228, 388
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 1 cut(s) 558
TspGWI ACGGA 1 cut(s) 124
TspMI CCCGGG 1 cut(s) 322
TspRI CASTG 3 cut(s) 292, 307, 347
XagI CCTNNNNNAGG 1 cut(s) 478
XapI RAATTY 1 cut(s) 459
XceI RCATGY 2 cut(s) 185, 541
XhoI CTCGAG 1 cut(s) 673
XmaI CCCGGG 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.