Rh7AG363100

DAG protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011905
Physical Location & Seq
Reverse (-)
46682718 .. 46686189
3472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG363100.1

Sequence Viewer

Length: 537 bp
ATGGTTCAAACCCTAGTCCGAACCATAGCCATGGCCGCCGCCGCCACCACCGGTCGCCACCCCACAATCTCCTCCCTCATCCCCAAACGCCTCCTCTCCACCTCCAAAATCACCCAACCCCCCTCCGTCCCCTCTCTCATCCTCGGCCGTCGATCTCTCGCGCCGCTCTCCCACGCCGTCCGTCCCTTCCCCGCCCCGCGTTTCACTTCTATTCGCTGCCGTGTCAACCGCTCCGGCGGGTCGTACTCCCCCCTTAACTCCGGTTCGAACTTCAGCGAGCGCCCGCCGACCGAGATGGCCCCGCTCTTCCCCGGCTGCGATTACGAGCACTTCCTCATCGTCATGGACAAGCCCGGCGGCGAAGGAGCCACGAAGCAACAGATGATCGATTGCTATGTTCAGACAGCCGCTAAAGTCCTCGGGAGTGAGGAAGAAGCGAAGAAGAAGATCTACAATGTGTCATGCGAGAGGTATTTTGGTTTTGGCGTTAACATTGATGAGGAGACTGCCAACAAGCTTGAAGGTTTGTGTTGTTAA

Protein Analysis

178

Amino Acids

19.38

Weight (kDa)

9.11

Isoelectric Point (pI)

53.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 108 - 176 6.1e-26 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32580 AT2G35240
fragaria_vesca FvH4_7g07460
malus_domestica MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica Prupe.1G045300_v2.0.a1
pyrus_communis pycom13g19350 pycom17g21670
rosa_chinensis RchiOBHm_Chr7g0223791
rosa_laevigata RLG00000001946
rosa_multiflora Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii Rroxscaffold_3G00235330
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana Rw7G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 166, 231, 304
AccII CGCG 2 cut(s) 161, 199
AcoI YGGCCR 2 cut(s) 33, 145
AcuI CTGAAG 1 cut(s) 256
AfaI GTAC 1 cut(s) 245
AgeI ACCGGT 1 cut(s) 50
AgsI TTSAA 2 cut(s) 8, 521
AluBI AGCT 1 cut(s) 517
AluI AGCT 1 cut(s) 517
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 497
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 3 cut(s) 33, 145, 297
ApeKI GCWGC 2 cut(s) 216, 315
AsiGI ACCGGT 1 cut(s) 50
AspLEI GCGC 2 cut(s) 163, 282
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 2 cut(s) 312, 354
AsuHPI GGTGA 1 cut(s) 103
AsuII TTCGAA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 419
BarI GAAGNNNNNNTAC 2 cut(s) 434, 466
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 2 cut(s) 203, 302
BccI CCATC 1 cut(s) 289
BceAI ACGGC 3 cut(s) 132, 161, 204
BcnI CCSGG 2 cut(s) 312, 354
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 283
BglII AGATCT 1 cut(s) 447
BisI GCNGC 8 cut(s) 36, 39, 42, 164, 217, 316, 358, 408
BlsI GCNGC 8 cut(s) 37, 40, 43, 165, 218, 317, 359, 409
Bme1390I CCNGG 2 cut(s) 312, 354
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 300, 367
BmrFI CCNGG 2 cut(s) 312, 354
Bpu14I TTCGAA 1 cut(s) 266
BpuMI CCSGG 2 cut(s) 312, 354
Bsa29I ATCGAT 1 cut(s) 387
BsaJI CCNNGG 4 cut(s) 30, 142, 310, 418
BsaWI WCCGGW 2 cut(s) 50, 260
Bse118I RCCGGY 1 cut(s) 50
BseCI ATCGAT 1 cut(s) 387
BseDI CCNNGG 4 cut(s) 30, 142, 310, 418
BseGI GGATG 2 cut(s) 78, 138
BseRI GAGGAG 3 cut(s) 61, 83, 515
BseX3I CGGCCG 1 cut(s) 145
BseXI GCAGC 2 cut(s) 203, 302
Bsh1236I CGCG 2 cut(s) 161, 199
Bsh1285I CGRYCG 3 cut(s) 55, 148, 291
BshFI GGCC 3 cut(s) 35, 147, 299
BshTI ACCGGT 1 cut(s) 50
BshVI ATCGAT 1 cut(s) 387
BsiEI CGRYCG 3 cut(s) 55, 148, 291
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 419
BsiSI CCGG 5 cut(s) 51, 234, 261, 312, 354
BslFI GGGAC 2 cut(s) 113, 168
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 2 cut(s) 113, 168
BsnI GGCC 3 cut(s) 35, 147, 299
BsoBI CYCGRG 1 cut(s) 419
Bsp119I TTCGAA 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 152, 384, 447
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 3 cut(s) 35, 147, 299
BspDI ATCGAT 1 cut(s) 387
BspFNI CGCG 2 cut(s) 161, 199
BspLI GGNNCC 2 cut(s) 300, 367
BspQI GCTCTTC 1 cut(s) 311
BspT104I TTCGAA 1 cut(s) 266
BsrBI CCGCTC 3 cut(s) 166, 231, 304
BsrFI RCCGGY 1 cut(s) 50
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 4 cut(s) 30, 142, 310, 418
BssMI GATC 3 cut(s) 152, 384, 447
BssT1I CCWWGG 1 cut(s) 30
Bst6I CTCTTC 1 cut(s) 311
BstBI TTCGAA 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 278, 284
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 2 cut(s) 78, 138
BstFNI CGCG 2 cut(s) 161, 199
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 2 cut(s) 163, 282
BstKTI GATC 3 cut(s) 155, 387, 450
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 3 cut(s) 152, 384, 447
BstMCI CGRYCG 3 cut(s) 55, 148, 291
BstMWI GCNNNNNNNGC 2 cut(s) 35, 41
BstSCI CCNGG 2 cut(s) 310, 352
BstUI CGCG 2 cut(s) 161, 199
BstV1I GCAGC 2 cut(s) 203, 302
BstX2I RGATCY 1 cut(s) 447
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 447
BstZI CGGCCG 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 387
BsuRI GGCC 3 cut(s) 35, 147, 299
BsuTUI ATCGAT 1 cut(s) 387
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 2 cut(s) 78, 138
Cac8I GCNNGC 2 cut(s) 278, 284
CfoI GCGC 2 cut(s) 163, 282
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 1 cut(s) 298
ClaI ATCGAT 1 cut(s) 387
Csp6I GTAC 1 cut(s) 244
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 3 cut(s) 31, 343, 462
CviJI RGCY 9 cut(s) 29, 35, 147, 299, 315, 352, 368, 407, 517
CviKI_1 RGCY 9 cut(s) 29, 35, 147, 299, 315, 352, 368, 407, 517
CviQI GTAC 1 cut(s) 244
DpnI GATC 3 cut(s) 154, 386, 449
DpnII GATC 3 cut(s) 152, 384, 447
EaeI YGGCCR 2 cut(s) 33, 145
EagI CGGCCG 1 cut(s) 145
Eam1104I CTCTTC 1 cut(s) 311
EarI CTCTTC 1 cut(s) 311
EclXI CGGCCG 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 30
Eco52I CGGCCG 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 256
Eco88I CYCGRG 1 cut(s) 419
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 3 cut(s) 34, 346, 465
FaiI YATR 5 cut(s) 26, 32, 344, 396, 463
FaqI GGGAC 2 cut(s) 113, 168
FatI CATG 3 cut(s) 30, 342, 461
FauI CCCGC 5 cut(s) 199, 204, 230, 291, 309
Fnu4HI GCNGC 8 cut(s) 36, 39, 42, 164, 217, 316, 358, 408
FokI GGATG 2 cut(s) 65, 125
Fsp4HI GCNGC 8 cut(s) 36, 39, 42, 164, 217, 316, 358, 408
FspBI CTAG 1 cut(s) 14
GlaI GCGC 2 cut(s) 162, 281
GluI GCNGC 8 cut(s) 36, 39, 42, 164, 217, 316, 358, 408
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 3 cut(s) 35, 147, 299
HapII CCGG 5 cut(s) 51, 234, 261, 312, 354
HhaI GCGC 2 cut(s) 163, 282
Hin1II CATG 3 cut(s) 34, 346, 465
Hin6I GCGC 2 cut(s) 161, 280
HinP1I GCGC 2 cut(s) 161, 280
HincII GTYRAC 2 cut(s) 226, 490
HindII GTYRAC 2 cut(s) 226, 490
HindIII AAGCTT 1 cut(s) 515
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 5 cut(s) 51, 234, 261, 312, 354
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 2 cut(s) 226, 490
Hpy188I TCNGA 2 cut(s) 20, 402
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 2 cut(s) 226, 490
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 3 cut(s) 196, 356, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 41
Hsp92II CATG 3 cut(s) 34, 346, 465
HspAI GCGC 2 cut(s) 161, 280
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 3 cut(s) 152, 384, 447
LguI GCTCTTC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 236, 365
LpnPI CCDG 5 cut(s) 64, 247, 274, 325, 367
Lsp1109I GCAGC 2 cut(s) 203, 302
MaeI CTAG 1 cut(s) 14
MalI GATC 3 cut(s) 154, 386, 449
MbiI CCGCTC 3 cut(s) 166, 231, 304
MboI GATC 3 cut(s) 152, 384, 447
MboII GAAGA 5 cut(s) 298, 443, 451, 454, 457
MflI RGATCY 1 cut(s) 447
MhlI GDGCHC 1 cut(s) 330
MseI TTAA 3 cut(s) 255, 489, 535
MslI CAYNNNNRTG 2 cut(s) 29, 341
MspI CCGG 5 cut(s) 51, 234, 261, 312, 354
MspR9I CCNGG 2 cut(s) 312, 354
MvnI CGCG 2 cut(s) 161, 199
MwoI GCNNNNNNNGC 2 cut(s) 35, 41
NciI CCSGG 2 cut(s) 312, 354
NcoI CCATGG 1 cut(s) 30
NdeII GATC 3 cut(s) 152, 384, 447
NlaIII CATG 3 cut(s) 34, 346, 465
NlaIV GGNNCC 2 cut(s) 300, 367
NmeAIII GCCGAG 1 cut(s) 123
NspV TTCGAA 1 cut(s) 266
PciSI GCTCTTC 1 cut(s) 311
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 8 cut(s) 37, 40, 43, 165, 218, 317, 359, 409
PspN4I GGNNCC 2 cut(s) 300, 367
PspPI GGNCC 1 cut(s) 298
PsuI RGATCY 1 cut(s) 447
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 29, 341
SapI GCTCTTC 1 cut(s) 311
SaqAI TTAA 3 cut(s) 255, 489, 535
SatI GCNGC 8 cut(s) 36, 39, 42, 164, 217, 316, 358, 408
Sau3AI GATC 3 cut(s) 152, 384, 447
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 2 cut(s) 312, 354
SduI GDGCHC 1 cut(s) 330
SetI ASST 4 cut(s) 104, 473, 519, 526
SfuI TTCGAA 1 cut(s) 266
SmiMI CAYNNNNRTG 2 cut(s) 29, 341
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 2 cut(s) 310, 352
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 3 cut(s) 151, 266, 387
TaqII GACCGA 1 cut(s) 305
TauI GCSGC 6 cut(s) 38, 41, 44, 166, 360, 410
Tru1I TTAA 3 cut(s) 255, 489, 535
Tru9I TTAA 3 cut(s) 255, 489, 535
TseI GCWGC 2 cut(s) 216, 315
TspGWI ACGGA 2 cut(s) 115, 170
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.