FvH4_7g07460

DAG protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011905
Physical Location & Seq
Forward (+)
7370200 .. 7372907
2708 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07460.t1

Sequence Viewer

Length: 744 bp
ATGGTTCAAACCCTAGTCCGAACCATAGCCATGGCCGCCGCCGCCGCCACCACCGCTCGCGCCGCCGCAATCTCCTCCCTCATCCCCAAGCGCCTCCTCTCCTCCACCTCCAGAATCACCCGTCCCCCCTCCGTCCCCTCTCTTATCCTCGGCCGTCGATCTCTCGCGCCGCTCTCCCATGCCGTCCGTCCCTACCCCGCCGCCGCCACGCGTTTCACCGCTATTCGCTGCCGCGTTAACCGCTCCGGCGGGTCGTACTCCCCCCTTAACTCCGGCTCGAACTTCAGCGAGCGTCCCCCGACGGAGATGGCTCCGCTCTTCCCAGGCTGCGACTACGAGCACTTCCTCATCGTCATGGATAAGCCCGGCGGCGAAGGAGCCACCAAGCAGGAGATGATCAACTGCTACATTCAGACCGCTGCTAAAGTCCTCGGCAGTGAGGAAGAAGCGAAGAAGAAGATCTACAATGTGTCATGTGAGAGGTATTTTGGTTTCGGAGTGAACATTGATGAGGAGACCGCCAACAAGCTTGAAGGTTTGCCCGGAGTTCTTTTTGTGCTTCCGGATTCATATGTTGATGCTGAGAATCAAGACTATGGGGCGGAGTTGTTTGTCAATGGAGAAATTGTTCAAAGGTCTCCTGAAAGGCAGAGGAGGGTGGAGCCACAGCCCTCAAGAGCTCAGGACAGACCCCGATACAATGACAGAACTCGATATGTGCGTAGGAGGGAAAATGTGCGGTGA

Protein Analysis

248

Amino Acids

27.44

Weight (kDa)

9.56

Isoelectric Point (pI)

58.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MORF_dom PF21864 112 - 202 1.1e-36 Multiple organellar RNA editing factor 1, MORF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011905)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G32580 AT2G35240
fragaria_vesca FvH4_7g07460
malus_domestica MD13G1218600.v1.1 MD16G1223900.v1.1
prunus_persica Prupe.1G045300_v2.0.a1
pyrus_communis pycom13g19350 pycom17g21670
rosa_chinensis RchiOBHm_Chr7g0223791
rosa_laevigata RLG00000001946
rosa_multiflora Rmu_sc0004540.1_g000007 Rmu_sc0010556.1_g000006
rosa_roxburghii Rroxscaffold_3G00235330
rosa_rugosa Rorug07G0219600
rosa_samantha Rh7AG363100 Rh7BG353900 Rh7CG381500 Rh7DG357900
rosa_wichuraiana Rw7G030820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 4 cut(s) 56, 172, 243, 316
AccII CGCG 4 cut(s) 60, 167, 211, 234
AccIII TCCGGA 1 cut(s) 562
AcoI YGGCCR 2 cut(s) 33, 151
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 1 cut(s) 257
AflIII ACRYGT 1 cut(s) 209
AgsI TTSAA 3 cut(s) 8, 533, 632
AjnI CCWGG 1 cut(s) 322
AloI GAACNNNNNNTCC 2 cut(s) 612, 644
AluBI AGCT 2 cut(s) 529, 680
AluI AGCT 2 cut(s) 529, 680
Alw21I GWGCWC 2 cut(s) 342, 682
Alw26I GTCTC 2 cut(s) 509, 642
Aor13HI TCCGGA 1 cut(s) 562
AoxI GGCC 2 cut(s) 33, 151
ApeKI GCWGC 3 cut(s) 228, 327, 419
Asp700I GAANNNNTTC 1 cut(s) 627
AspLEI GCGC 3 cut(s) 62, 93, 169
AsuC2I CCSGG 2 cut(s) 366, 543
AsuHPI GGTGA 2 cut(s) 109, 208
BanII GRGCYC 1 cut(s) 682
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
Bbv12I GWGCWC 2 cut(s) 342, 682
BbvI GCAGC 3 cut(s) 215, 314, 406
BccI CCATC 1 cut(s) 301
BceAI ACGGC 2 cut(s) 138, 167
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 396
BcnI CCSGG 2 cut(s) 366, 543
BcoDI GTCTC 2 cut(s) 509, 642
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 1 cut(s) 94
BglII AGATCT 1 cut(s) 459
Bme1390I CCNGG 3 cut(s) 324, 366, 543
BmiI GGNNCC 3 cut(s) 312, 379, 663
BmrFI CCNGG 3 cut(s) 324, 366, 543
BmsI GCATC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 94
Bpu10I CCTNAGC 1 cut(s) 681
BpuEI CTTGAG 1 cut(s) 658
BpuMI CCSGG 2 cut(s) 366, 543
BsaI GGTCTC 2 cut(s) 509, 642
BsaJI CCNNGG 4 cut(s) 30, 148, 322, 430
BsaWI WCCGGW 1 cut(s) 562
BsaXI ACNNNNNCTCC 2 cut(s) 612, 642
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 4 cut(s) 30, 148, 322, 430
BseGI GGATG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 573, 695
BseRI GAGGAG 5 cut(s) 64, 86, 91, 527, 667
BseX3I CGGCCG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 215, 314, 406
Bsh1236I CGCG 4 cut(s) 60, 167, 211, 234
Bsh1285I CGRYCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 35, 153
BsiEI CGRYCG 1 cut(s) 154
BsiHKAI GWGCWC 2 cut(s) 342, 682
BsiSI CCGG 5 cut(s) 246, 273, 366, 543, 563
BslFI GGGAC 4 cut(s) 108, 119, 174, 279
BsmAI GTCTC 2 cut(s) 509, 642
BsmFI GGGAC 4 cut(s) 108, 119, 174, 279
BsnI GGCC 2 cut(s) 35, 153
Bso31I GGTCTC 2 cut(s) 509, 642
Bsp1286I GDGCHC 2 cut(s) 342, 682
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 3 cut(s) 158, 396, 459
Bsp19I CCATGG 1 cut(s) 30
BspANI GGCC 2 cut(s) 35, 153
BspCNI CTCAG 2 cut(s) 574, 694
BspEI TCCGGA 1 cut(s) 562
BspFNI CGCG 4 cut(s) 60, 167, 211, 234
BspLI GGNNCC 3 cut(s) 312, 379, 663
BspQI GCTCTTC 1 cut(s) 323
BspTNI GGTCTC 2 cut(s) 509, 642
BsrBI CCGCTC 4 cut(s) 56, 172, 243, 316
BssECI CCNNGG 4 cut(s) 30, 148, 322, 430
BssMI GATC 3 cut(s) 158, 396, 459
BssT1I CCWWGG 1 cut(s) 30
Bst2UI CCWGG 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 323
BstC8I GCNNGC 2 cut(s) 58, 290
BstDEI CTNAG 2 cut(s) 582, 681
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 1 cut(s) 81
BstFNI CGCG 4 cut(s) 60, 167, 211, 234
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 3 cut(s) 62, 93, 169
BstKTI GATC 3 cut(s) 161, 399, 462
BstMAI GTCTC 2 cut(s) 509, 642
BstMBI GATC 3 cut(s) 158, 396, 459
BstMCI CGRYCG 1 cut(s) 154
BstMWI GCNNNNNNNGC 6 cut(s) 35, 41, 44, 53, 62, 240
BstNI CCWGG 1 cut(s) 324
BstSCI CCNGG 3 cut(s) 322, 364, 541
BstUI CGCG 4 cut(s) 60, 167, 211, 234
BstV1I GCAGC 3 cut(s) 215, 314, 406
BstX2I RGATCY 1 cut(s) 459
BstXI CCANNNNNNTGG 1 cut(s) 31
BstYI RGATCY 1 cut(s) 459
BstZI CGGCCG 1 cut(s) 151
BsuRI GGCC 2 cut(s) 35, 153
BtgI CCRYGG 1 cut(s) 30
BtsCI GGATG 1 cut(s) 81
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 442
Cac8I GCNNGC 2 cut(s) 58, 290
CfoI GCGC 3 cut(s) 62, 93, 169
CseI GACGC 1 cut(s) 281
Csp6I GTAC 1 cut(s) 256
CviAII CATG 4 cut(s) 31, 179, 355, 474
CviQI GTAC 1 cut(s) 256
DdeI CTNAG 2 cut(s) 582, 681
DpnI GATC 3 cut(s) 160, 398, 461
DpnII GATC 3 cut(s) 158, 396, 459
EaeI YGGCCR 2 cut(s) 33, 151
EagI CGGCCG 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 617
Ecl136II GAGCTC 1 cut(s) 680
EclXI CGGCCG 1 cut(s) 151
Eco130I CCWWGG 1 cut(s) 30
Eco24I GRGCYC 1 cut(s) 682
Eco31I GGTCTC 2 cut(s) 509, 642
Eco52I CGGCCG 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 268
EcoICRI GAGCTC 1 cut(s) 680
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 30
EcoT38I GRGCYC 1 cut(s) 682
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 34, 182, 358, 477
FaiI YATR 9 cut(s) 26, 32, 180, 356, 475, 571, 573, 597, 717
FaqI GGGAC 4 cut(s) 108, 119, 174, 279
FatI CATG 4 cut(s) 30, 178, 354, 473
FauI CCCGC 2 cut(s) 205, 242
FauNDI CATATG 1 cut(s) 571
FbaI TGATCA 1 cut(s) 396
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 682
FspBI CTAG 1 cut(s) 14
GlaI GCGC 3 cut(s) 61, 92, 168
GsuI CTGGAG 1 cut(s) 94
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 2 cut(s) 35, 153
HapII CCGG 5 cut(s) 246, 273, 366, 543, 563
HgaI GACGC 1 cut(s) 281
HhaI GCGC 3 cut(s) 62, 93, 169
Hin1II CATG 4 cut(s) 34, 182, 358, 477
Hin6I GCGC 3 cut(s) 60, 91, 167
HinP1I GCGC 3 cut(s) 60, 91, 167
HincII GTYRAC 1 cut(s) 238
HindII GTYRAC 1 cut(s) 238
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 3 cut(s) 114, 566, 586
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 5 cut(s) 246, 273, 366, 543, 563
HphI GGTGA 2 cut(s) 109, 208
Hpy166II GTNNAC 2 cut(s) 238, 502
Hpy188I TCNGA 3 cut(s) 20, 414, 497
Hpy188III TCNNGA 6 cut(s) 111, 563, 590, 641, 675, 683
Hpy8I GTNNAC 2 cut(s) 238, 502
Hpy99I CGWCG 2 cut(s) 159, 304
HpyAV CCTTC 2 cut(s) 368, 527
HpyF10VI GCNNNNNNNGC 6 cut(s) 35, 41, 44, 53, 62, 240
HpyF3I CTNAG 2 cut(s) 582, 681
Hsp92II CATG 4 cut(s) 34, 182, 358, 477
HspAI GCGC 3 cut(s) 60, 91, 167
Kpn2I TCCGGA 1 cut(s) 562
Ksp22I TGATCA 1 cut(s) 396
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 3 cut(s) 158, 396, 459
LguI GCTCTTC 1 cut(s) 323
LmnI GCTCC 4 cut(s) 248, 316, 377, 661
Lsp1109I GCAGC 3 cut(s) 215, 314, 406
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 14
MalI GATC 3 cut(s) 160, 398, 461
MbiI CCGCTC 4 cut(s) 56, 172, 243, 316
MboI GATC 3 cut(s) 158, 396, 459
MboII GAAGA 5 cut(s) 310, 455, 463, 466, 469
MflI RGATCY 1 cut(s) 459
MhlI GDGCHC 2 cut(s) 342, 682
MluCI AATT 1 cut(s) 624
MluI ACGCGT 1 cut(s) 209
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 1 cut(s) 627
MseI TTAA 2 cut(s) 237, 267
MslI CAYNNNNRTG 2 cut(s) 29, 353
MspA1I CMGCKG 1 cut(s) 419
MspI CCGG 5 cut(s) 246, 273, 366, 543, 563
MspR9I CCNGG 3 cut(s) 324, 366, 543
MvaI CCWGG 1 cut(s) 324
MvnI CGCG 4 cut(s) 60, 167, 211, 234
MwoI GCNNNNNNNGC 6 cut(s) 35, 41, 44, 53, 62, 240
NciI CCSGG 2 cut(s) 366, 543
NcoI CCATGG 1 cut(s) 30
NdeI CATATG 1 cut(s) 571
NdeII GATC 3 cut(s) 158, 396, 459
NlaIII CATG 4 cut(s) 34, 182, 358, 477
NlaIV GGNNCC 3 cut(s) 312, 379, 663
NmeAIII GCCGAG 2 cut(s) 129, 411
PciSI GCTCTTC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 114, 566, 586
Psp124BI GAGCTC 1 cut(s) 682
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 3 cut(s) 312, 379, 663
PsuI RGATCY 1 cut(s) 459
RsaI GTAC 1 cut(s) 257
RsaNI GTAC 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 29, 353
SacI GAGCTC 1 cut(s) 682
SapI GCTCTTC 1 cut(s) 323
SaqAI TTAA 2 cut(s) 237, 267
Sau3AI GATC 3 cut(s) 158, 396, 459
ScrFI CCNGG 3 cut(s) 324, 366, 543
SduI GDGCHC 2 cut(s) 342, 682
SetI ASST 6 cut(s) 110, 485, 531, 538, 638, 682
SfaNI GCATC 1 cut(s) 568
SmiMI CAYNNNNRTG 2 cut(s) 29, 353
SmlI CTYRAG 1 cut(s) 673
SmoI CTYRAG 1 cut(s) 673
Sse9I AATT 1 cut(s) 624
SspMI CTAG 1 cut(s) 14
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 3 cut(s) 322, 364, 541
StyI CCWWGG 1 cut(s) 30
TaqI TCGA 3 cut(s) 157, 278, 712
TasI AATT 1 cut(s) 624
TfiI GAWTC 3 cut(s) 114, 566, 586
Tru1I TTAA 2 cut(s) 237, 267
Tru9I TTAA 2 cut(s) 237, 267
TscAI CASTG 1 cut(s) 442
TseI GCWGC 3 cut(s) 228, 327, 419
TspDTI ATGAA 1 cut(s) 558
TspGWI ACGGA 3 cut(s) 121, 176, 317
TspRI CASTG 1 cut(s) 442
XmnI GAANNNNTTC 1 cut(s) 627
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.