AT1G32860

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013309
Physical Location & Seq
Reverse (-)
11907044 .. 11909049
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G32860.1

Sequence Viewer

Length: 1281 bp
ATGGAGCTTACCAGCTTCCATCGCTCTTCTCTCTTATTCCTCATCTCACTAACATTGATCATTCTCCCGACGACAACAACTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAACCTCCCCTCCCCAACCGACGTAATCCCACTAATAAAATCAATCGGAGCAACAAAAGTAAAACTCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATCATCGGACTCGGCAACGAATACCTCTCCAAAATGAAAGATCCTTCAAAAGCCTTAACATGGATCAAACAAAACGTTACTCCATTTTTACCTGCGACTAACATCACATGCATAACTATCGGTAACGAAATCCTCGCTCTCAACGACTCTTCACTCACTACCAATCTCCTCCCAGCGATGCAAGGAGTTCACTCTGCTTTAATCACCGCCGGTCTCTCCGATCAAATCTCCGTCACCACCGCGCATTCTCTCTCGATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCGGATCTACTCGATTCGCTAACTCCGATCTTAGAATTTCACCGGAAAACTGATTCTCCGTTCTTAATCAACGCGTATCCTTTCTTCGCTTACAAAGGAAACCCTAAAGAAGTTCCTTTAGATTTCGTTCTGTTTCAACCTAATCAAGGAATCGTAGATCCGGCCACCGGTTTTCACTACGATAACATGTTGTTCGCTCAGATCGACGCTGTCTACTCTGCTTTAGCGGCGGCGGGGTTTAAATCGTTGAGAGTTGAGATATCGGAGACTGGGTGGCCATCGAAAGGTGACGACGATGAGGTCGGAGCTACGCCGGAGAATGCGAAGAGGTATAACGGAAACTTGATTAAGATGATGATGAGTGGTAAAAAGACTAAAACGCCCTTGAAGCCTAATAATGATCTAAGTATTTACGTTTTTGCCCTTTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGCTTGTTTAAACCTGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGATGTCGTGAGAGGTGCTAGTGGTGGTGGTACCGGTGGTGGGAATAGTAGTAGCGGTGGAGGAAGGGATAAGTCACCGGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTTCGGCTTCTCCGGTAACGGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGTGAGCATGTTACTGGCGAGACACTTACTTTGA

Protein Analysis

426

Amino Acids

45.42

Weight (kDa)

7.75

Isoelectric Point (pI)

34.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 349 4.7e-81 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 830
AatII GACGTC 1 cut(s) 989
Acc36I ACCTGC 1 cut(s) 334
Acc65I GGTACC 1 cut(s) 1085
AccB1I GGYRCC 1 cut(s) 1085
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 476, 605
AciI CCGC 7 cut(s) 441, 474, 516, 758, 761, 764, 1110
AclI AACGTT 1 cut(s) 309
AclWI GGATC 5 cut(s) 269, 305, 484, 543, 683
AcoI YGGCCR 2 cut(s) 693, 806
AcsI RAATTY 3 cut(s) 230, 566, 967
AcyI GRCGYC 1 cut(s) 986
AfaI GTAC 1 cut(s) 1087
AfiI CCNNNNNNNGG 7 cut(s) 294, 518, 677, 698, 815, 1095, 1208
AflIII ACRYGT 2 cut(s) 603, 717
AgeI ACCGGT 3 cut(s) 698, 1088, 1132
AgsI TTSAA 6 cut(s) 84, 282, 530, 668, 919, 973
AjnI CCWGG 1 cut(s) 976
AluBI AGCT 4 cut(s) 7, 15, 209, 839
AluI AGCT 4 cut(s) 7, 15, 209, 839
Alw26I GTCTC 4 cut(s) 105, 452, 791, 1261
AlwI GGATC 5 cut(s) 269, 305, 484, 543, 683
AoxI GGCC 3 cut(s) 693, 806, 1155
ApoI RAATTY 3 cut(s) 230, 566, 967
ArsI GACNNNNNNTTYG 1 cut(s) 1260
AsiGI ACCGGT 3 cut(s) 698, 1088, 1132
Asp718I GGTACC 1 cut(s) 1085
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 2 cut(s) 980, 1156
AsuC2I CCSGG 1 cut(s) 1160
AsuHPI GGTGA 6 cut(s) 430, 460, 563, 830, 1122, 1261
AvaII GGWCC 1 cut(s) 980
BalI TGGCCA 1 cut(s) 808
BanI GGYRCC 1 cut(s) 1085
BarI GAAGNNNNNNTAC 2 cut(s) 599, 631
BccI CCATC 3 cut(s) 27, 817, 1013
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 1 cut(s) 978
BciVI GTATCC 1 cut(s) 618
BclI TGATCA 1 cut(s) 57
BcnI CCSGG 1 cut(s) 1160
BcoDI GTCTC 4 cut(s) 105, 452, 791, 1261
BfaI CTAG 1 cut(s) 1074
BfuAI ACCTGC 1 cut(s) 334
BfuI GTATCC 1 cut(s) 618
BisI GCNGC 2 cut(s) 759, 762
BlsI GCNGC 2 cut(s) 760, 763
Bme1390I CCNGG 2 cut(s) 978, 1160
Bme18I GGWCC 1 cut(s) 980
BmgT120I GGNCC 2 cut(s) 980, 1156
BmiI GGNNCC 2 cut(s) 1087, 1158
BmrFI CCNGG 2 cut(s) 978, 1160
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 810
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpuMI CCSGG 1 cut(s) 1160
BsaHI GRCGYC 1 cut(s) 986
BsaI GGTCTC 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 1158
BsaWI WCCGGW 9 cut(s) 221, 532, 573, 698, 1088, 1132, 1141, 1150, 1201
BsaXI ACNNNNNCTCC 6 cut(s) 107, 137, 571, 601, 788, 818
Bsc4I CCNNNNNNNGG 7 cut(s) 294, 518, 677, 698, 815, 1095, 1208
Bse118I RCCGGY 5 cut(s) 443, 518, 698, 1088, 1132
Bse1I ACTGG 3 cut(s) 805, 1180, 1266
BseBI CCWGG 1 cut(s) 978
BseDI CCNNGG 1 cut(s) 1158
BseLI CCNNNNNNNGG 7 cut(s) 294, 518, 677, 698, 815, 1095, 1208
BseMII CTCAG 2 cut(s) 743, 1040
BseNI ACTGG 3 cut(s) 805, 1180, 1266
BseRI GAGGAG 1 cut(s) 392
BseYI CCCAGC 1 cut(s) 406
Bsh1236I CGCG 2 cut(s) 476, 605
BshFI GGCC 3 cut(s) 695, 808, 1157
BshNI GGYRCC 1 cut(s) 1085
BshTI ACCGGT 3 cut(s) 698, 1088, 1132
BslFI GGGAC 1 cut(s) 1036
BslI CCNNNNNNNGG 7 cut(s) 294, 518, 677, 698, 815, 1095, 1208
BsmAI GTCTC 4 cut(s) 105, 452, 791, 1261
BsmFI GGGAC 1 cut(s) 1036
BsmI GAATGC 2 cut(s) 478, 856
BsnI GGCC 3 cut(s) 695, 808, 1157
Bso31I GGTCTC 1 cut(s) 452
BspACI CCGC 7 cut(s) 441, 474, 516, 758, 761, 764, 1110
BspANI GGCC 3 cut(s) 695, 808, 1157
BspCNI CTCAG 2 cut(s) 742, 1039
BspFNI CGCG 2 cut(s) 476, 605
BspLI GGNNCC 2 cut(s) 1087, 1158
BspMI ACCTGC 1 cut(s) 334
BspPI GGATC 5 cut(s) 269, 305, 484, 543, 683
BspQI GCTCTTC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 452
BsrFI RCCGGY 5 cut(s) 443, 518, 698, 1088, 1132
BsrI ACTGG 3 cut(s) 805, 1180, 1266
BssAI RCCGGY 5 cut(s) 443, 518, 698, 1088, 1132
BssECI CCNNGG 1 cut(s) 1158
BssNI GRCGYC 1 cut(s) 986
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 3 cut(s) 31, 388, 851
BstACI GRCGYC 1 cut(s) 986
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 4 cut(s) 562, 729, 935, 1026
BstENI CCTNNNNNAGG 1 cut(s) 675
BstFNI CGCG 2 cut(s) 476, 605
BstHHI GCGC 1 cut(s) 478
BstMAI GTCTC 4 cut(s) 105, 452, 791, 1261
BstMWI GCNNNNNNNGC 4 cut(s) 21, 758, 919, 1193
BstNI CCWGG 1 cut(s) 978
BstNSI RCATGY 3 cut(s) 345, 721, 1258
BstSCI CCNGG 2 cut(s) 976, 1158
BstUI CGCG 2 cut(s) 476, 605
BstX2I RGATCY 3 cut(s) 274, 535, 688
BstYI RGATCY 3 cut(s) 274, 535, 688
BsuI GTATCC 1 cut(s) 618
BsuRI GGCC 3 cut(s) 695, 808, 1157
BtgZI GCGATG 2 cut(s) 5, 425
BtsIMutI CAGTG 1 cut(s) 1173
BveI ACCTGC 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 520
CfoI GCGC 1 cut(s) 478
Cfr10I RCCGGY 5 cut(s) 443, 518, 698, 1088, 1132
Cfr13I GGNCC 2 cut(s) 980, 1156
CseI GACGC 3 cut(s) 194, 746, 1158
CsiI ACCWGGT 1 cut(s) 976
Csp6I GTAC 1 cut(s) 1086
CspAI ACCGGT 3 cut(s) 698, 1088, 1132
CviAII CATG 4 cut(s) 294, 342, 718, 1255
CviQI GTAC 1 cut(s) 1086
DdeI CTNAG 4 cut(s) 562, 729, 935, 1026
DraI TTTAAA 3 cut(s) 772, 1012, 1053
DrdI GACNNNNNNGTC 1 cut(s) 830
DseDI GACNNNNNNGTC 1 cut(s) 830
EaeI YGGCCR 2 cut(s) 693, 806
Eam1104I CTCTTC 3 cut(s) 31, 388, 851
EarI CTCTTC 3 cut(s) 31, 388, 851
EciI GGCGGA 1 cut(s) 505
Eco31I GGTCTC 1 cut(s) 452
Eco32I GATATC 1 cut(s) 792
Eco47I GGWCC 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 675
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 976
EcoRV GATATC 1 cut(s) 792
EcoT22I ATGCAT 1 cut(s) 347
FaeI CATG 4 cut(s) 297, 345, 721, 1258
FaiI YATR 7 cut(s) 295, 343, 347, 719, 864, 1002, 1256
FaqI GGGAC 1 cut(s) 1036
FatI CATG 4 cut(s) 293, 341, 717, 1254
FauI CCCGC 1 cut(s) 757
FbaI TGATCA 1 cut(s) 57
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 2 cut(s) 759, 762
Fsp4HI GCNGC 2 cut(s) 759, 762
FspBI CTAG 1 cut(s) 1074
GlaI GCGC 1 cut(s) 477
GluI GCNGC 2 cut(s) 759, 762
GsaI CCCAGC 1 cut(s) 410
HaeIII GGCC 3 cut(s) 695, 808, 1157
HgaI GACGC 3 cut(s) 194, 746, 1158
HhaI GCGC 1 cut(s) 478
Hin1I GRCGYC 1 cut(s) 986
Hin1II CATG 4 cut(s) 297, 345, 721, 1258
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HindIII AAGCTT 1 cut(s) 207
HinfI GANTC 7 cut(s) 225, 243, 380, 545, 584, 681, 1024
HphI GGTGA 6 cut(s) 430, 460, 563, 830, 1122, 1261
Hpy166II GTNNAC 4 cut(s) 94, 424, 745, 1173
Hpy188III TCNNGA 3 cut(s) 67, 487, 1063
Hpy8I GTNNAC 4 cut(s) 94, 424, 745, 1173
Hpy99I CGWCG 7 cut(s) 73, 137, 188, 740, 827, 988, 991
HpyAV CCTTC 3 cut(s) 288, 522, 1113
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 4 cut(s) 135, 309, 945, 986
HpyCH4V TGCA 2 cut(s) 345, 415
HpyF10VI GCNNNNNNNGC 4 cut(s) 21, 758, 919, 1193
HpyF3I CTNAG 4 cut(s) 562, 729, 935, 1026
HpySE526I ACGT 4 cut(s) 135, 309, 945, 986
Hsp92I GRCGYC 1 cut(s) 986
Hsp92II CATG 4 cut(s) 297, 345, 721, 1258
HspAI GCGC 1 cut(s) 476
KpnI GGTACC 1 cut(s) 1089
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 57
LguI GCTCTTC 1 cut(s) 31
LmnI GCTCC 3 cut(s) 4, 161, 836
LweI GCATC 1 cut(s) 402
MabI ACCWGGT 1 cut(s) 976
MaeI CTAG 1 cut(s) 1074
MaeII ACGT 4 cut(s) 135, 309, 945, 986
MaeIII GTNAC 7 cut(s) 310, 356, 466, 818, 1128, 1204, 1257
MboII GAAGA 4 cut(s) 18, 375, 607, 868
MflI RGATCY 3 cut(s) 274, 535, 688
MlsI TGGCCA 1 cut(s) 808
MluCI AATT 5 cut(s) 230, 566, 967, 997, 1188
MluI ACGCGT 1 cut(s) 603
MluNI TGGCCA 1 cut(s) 808
MlyI GAGTC 3 cut(s) 237, 374, 1018
MmeI TCCRAC 4 cut(s) 240, 814, 969, 1007
Mox20I TGGCCA 1 cut(s) 808
Mph1103I ATGCAT 1 cut(s) 347
MreI CGCCGGCG 1 cut(s) 518
MroNI GCCGGC 1 cut(s) 518
MscI TGGCCA 1 cut(s) 808
MseI TTAA 8 cut(s) 290, 434, 596, 771, 879, 960, 1011, 1052
Msp20I TGGCCA 1 cut(s) 808
MspR9I CCNGG 2 cut(s) 978, 1160
MssI GTTTAAAC 1 cut(s) 1012
Mva1269I GAATGC 2 cut(s) 478, 856
MvaI CCWGG 1 cut(s) 978
MvnI CGCG 2 cut(s) 476, 605
MwoI GCNNNNNNNGC 4 cut(s) 21, 758, 919, 1193
NaeI GCCGGC 1 cut(s) 520
NciI CCSGG 1 cut(s) 1160
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 4 cut(s) 297, 345, 721, 1258
NlaIV GGNNCC 2 cut(s) 1087, 1158
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 3 cut(s) 466, 818, 1128
NsiI ATGCAT 1 cut(s) 347
NspI RCATGY 3 cut(s) 345, 721, 1258
PciI ACATGT 1 cut(s) 717
PciSI GCTCTTC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 3 cut(s) 375, 554, 732
PctI GAATGC 2 cut(s) 478, 856
PdiI GCCGGC 1 cut(s) 520
PfeI GAWTC 4 cut(s) 225, 545, 584, 681
PflFI GACNNNGTC 1 cut(s) 740
PinAI ACCGGT 3 cut(s) 698, 1088, 1132
PkrI GCNGC 2 cut(s) 760, 763
PleI GAGTC 3 cut(s) 237, 374, 1018
PmeI GTTTAAAC 1 cut(s) 1012
PpsI GAGTC 3 cut(s) 237, 374, 1018
PscI ACATGT 1 cut(s) 717
Psp1406I AACGTT 1 cut(s) 309
Psp6I CCWGG 1 cut(s) 976
PspFI CCCAGC 1 cut(s) 406
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 2 cut(s) 1087, 1158
PspPI GGNCC 2 cut(s) 980, 1156
PsuI RGATCY 3 cut(s) 274, 535, 688
PsyI GACNNNGTC 1 cut(s) 740
RsaI GTAC 1 cut(s) 1087
RsaNI GTAC 1 cut(s) 1086
SapI GCTCTTC 1 cut(s) 31
SaqAI TTAA 8 cut(s) 290, 434, 596, 771, 879, 960, 1011, 1052
SatI GCNGC 2 cut(s) 759, 762
Sau96I GGNCC 2 cut(s) 980, 1156
SchI GAGTC 3 cut(s) 237, 374, 1018
ScrFI CCNGG 2 cut(s) 978, 1160
SexAI ACCWGGT 1 cut(s) 976
SfaNI GCATC 1 cut(s) 402
SgrAI CRCCGGYG 2 cut(s) 518, 1132
SinI GGWCC 1 cut(s) 980
Sse9I AATT 5 cut(s) 230, 566, 967, 997, 1188
SsiI CCGC 7 cut(s) 441, 474, 516, 758, 761, 764, 1110
SspI AATATT 1 cut(s) 1236
SspMI CTAG 1 cut(s) 1074
StyD4I CCNGG 2 cut(s) 976, 1158
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 4 cut(s) 138, 312, 948, 989
TaqI TCGA 5 cut(s) 228, 488, 543, 735, 812
TasI AATT 5 cut(s) 230, 566, 967, 997, 1188
TauI GCSGC 2 cut(s) 761, 764
TfiI GAWTC 4 cut(s) 225, 545, 584, 681
Tru1I TTAA 8 cut(s) 290, 434, 596, 771, 879, 960, 1011, 1052
Tru9I TTAA 8 cut(s) 290, 434, 596, 771, 879, 960, 1011, 1052
TscAI CASTG 1 cut(s) 1180
TseFI GTSAC 3 cut(s) 466, 818, 1128
Tsp45I GTSAC 3 cut(s) 466, 818, 1128
TspDTI ATGAA 2 cut(s) 223, 284
TspGWI ACGGA 3 cut(s) 454, 579, 882
TspRI CASTG 1 cut(s) 1180
Tth111I GACNNNGTC 1 cut(s) 740
VpaK11BI GGWCC 1 cut(s) 980
XagI CCTNNNNNAGG 1 cut(s) 675
XapI RAATTY 3 cut(s) 230, 566, 967
XceI RCATGY 3 cut(s) 345, 721, 1258
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 1 cut(s) 1074
ZraI GACGTC 1 cut(s) 987
Zsp2I ATGCAT 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.