Prupe.5G132700_v2.0.a1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
12740904 .. 12742801
1898 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G132700.2

Sequence Viewer

Length: 1266 bp
ATGGCGACCAGCACTAGCTTCAGCTACTGCTCTTCACTATTCTTATCAATTCTAATCATTTCAGGGTTTGTGTTTGCTGAAATGGTGAATTCAATGGGGATAAACTACGGCCAAATCGCCAACAACTTACCTTCGCCGGACGACGTTGTTCCGTTGGTGAAGTCCATCGGCATCTCCAAGATCAAGCTCTACGACGCCGATCCCAAAGTCCTCAAGGCCTTCGCCAACACCGGCGTCCAGTTCATAGTAGGCCTGGGCAACGAGTACCTCACCAAGGTCCAAGACCCGGCCCAGGCCCAAAACTGGGTCAAGTCCAACGTTCAGGCCCACTTACCCGCCACCAACATCACCTGCATCTTCGTCGGCAACGAGGTCCTCACCTTCAACGACACGTCGTTGAGCAACAATCTCCTCCCCGCCATGCAAAGCGTCCACGCCGCCCTCGTCTCTCTCAATCTCGACAAGCAAGTCACCGTCACCACCGCCCATTCCCTCTCCATTCTTGAGACCTCGTTCCCGCCGTCGGCCGGAGCTTTCCGGCAAGATCTGACCGGCTGCATCACTCCGATCCTCAACTTCCACTCCAAAACAGGCTCGCCGTTCTTGATCAACGCATACCCCTACTTCGCCTACAAGTCAAACCCTAAGCAGGTGCCTCTGGACTACGTCCTCTTCCAGCCCAACTCCGGCTCGCTCGATTCGGGCACCAATCTCCACTACGACAATATGCTCTTCGCTCAGATCGACGCCGTTTACTCCGCCCTAGCTGCGCTAGGGTTTAAGAAGCTTCCGGTTCACATATCCGAGACCGGTTGGCCGTCAAAGGGCGACGAGGACGAAGCCGGAGCGACGCCGGAGAACGCGAAGAAGTACAACGGGAATCTGATCAAGCTCATCTGCCAGAAGAAGGGCACGCCGCTGAGGCCCGGGTCGGATCTCAACATCTACGTCTTCGCTCTGTTCAATGAGAACATGAAACCCGGCCCCACTTCCGAGAGAAACTTTGGGCTTTTCAAACCCGACGGTTCGCCCGCGTACTCAATCGGGCTGTCGGTGAGCAACAGCTCCTTTGGTAACGGTAACTCGAGTTCGAATTCGGGTTCGGGTTCGGGTTCGGGTGGGTTGGTGAATCCGATTACTCCCTCTCCGCCGGGAACTTCCAGTTCTGGCTACTTGGCAATTTCTTCCGCCGCGGTTACGGCAAGTCCTTCATTTTTACTGTTTTCTGTTTTCCTGTTTTACTGTGTTAAGCAGCTGAGTTTTTAG

Protein Analysis

422

Amino Acids

44.8

Weight (kDa)

6.59

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 359, 640
AasI GACNNNNNNGTC 1 cut(s) 467
Acc36I ACCTGC 2 cut(s) 359, 640
AccB1I GGYRCC 2 cut(s) 652, 704
AccII CGCG 3 cut(s) 863, 1034, 1193
AclI AACGTT 1 cut(s) 318
AclWI GGATC 3 cut(s) 194, 562, 942
AcoI YGGCCR 3 cut(s) 109, 525, 815
AcsI RAATTY 2 cut(s) 88, 1093
AcuI CTGAAG 1 cut(s) 4
AcyI GRCGYC 4 cut(s) 195, 234, 747, 851
AfaI GTAC 3 cut(s) 266, 872, 1037
AflIII ACRYGT 1 cut(s) 390
AgeI ACCGGT 1 cut(s) 809
AgsI TTSAA 4 cut(s) 93, 385, 964, 1015
AjiI CACGTC 1 cut(s) 393
AjnI CCWGG 2 cut(s) 252, 291
AluBI AGCT 9 cut(s) 18, 24, 187, 533, 767, 787, 892, 1065, 1255
AluI AGCT 9 cut(s) 18, 24, 187, 533, 767, 787, 892, 1065, 1255
Alw26I GTCTC 3 cut(s) 451, 500, 800
AlwI GGATC 3 cut(s) 194, 562, 942
AlwNI CAGNNNCTG 1 cut(s) 27
Ama87I CYCGRG 2 cut(s) 926, 1084
ApeKI GCWGC 3 cut(s) 555, 767, 1252
ApoI RAATTY 2 cut(s) 88, 1093
AsiGI ACCGGT 1 cut(s) 809
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 7 cut(s) 277, 289, 295, 325, 373, 924, 983
AsuC2I CCSGG 5 cut(s) 287, 927, 928, 981, 1152
AsuHPI GGTGA 9 cut(s) 97, 169, 262, 340, 370, 463, 469, 1066, 1138
AsuII TTCGAA 1 cut(s) 1091
AvaI CYCGRG 2 cut(s) 926, 1084
AvaII GGWCC 2 cut(s) 277, 373
BaeGI GKGCMC 2 cut(s) 707, 914
BanI GGYRCC 2 cut(s) 652, 704
BbsI GAAGAC 1 cut(s) 943
BbvCI CCTCAGC 1 cut(s) 920
BbvI GCAGC 2 cut(s) 542, 754
BccI CCATC 1 cut(s) 173
BceAI ACGGC 6 cut(s) 124, 505, 583, 734, 802, 1215
BcgI CGANNNNNNTGC 2 cut(s) 343, 377
BciT130I CCWGG 2 cut(s) 254, 293
BclI TGATCA 2 cut(s) 606, 885
BcnI CCSGG 5 cut(s) 287, 927, 928, 981, 1152
BcoDI GTCTC 3 cut(s) 451, 500, 800
BfaI CTAG 3 cut(s) 15, 764, 773
BfuAI ACCTGC 2 cut(s) 359, 640
BglI GCCNNNNNGGC 1 cut(s) 922
BglII AGATCT 1 cut(s) 544
BisI GCNGC 6 cut(s) 438, 556, 768, 917, 1191, 1253
BlsI GCNGC 6 cut(s) 439, 557, 769, 918, 1192, 1254
Bme1390I CCNGG 7 cut(s) 254, 287, 293, 927, 928, 981, 1152
Bme18I GGWCC 2 cut(s) 277, 373
BmeT110I CYCGRG 2 cut(s) 926, 1084
BmgBI CACGTC 1 cut(s) 393
BmgT120I GGNCC 7 cut(s) 277, 289, 295, 325, 373, 924, 983
BmiI GGNNCC 3 cut(s) 654, 706, 985
BmrFI CCNGG 7 cut(s) 254, 287, 293, 927, 928, 981, 1152
BmrI ACTGGG 1 cut(s) 313
BmsI GCATC 3 cut(s) 180, 363, 567
BmuI ACTGGG 1 cut(s) 313
BpiI GAAGAC 1 cut(s) 943
Bpu10I CCTNAGC 2 cut(s) 645, 920
Bpu14I TTCGAA 1 cut(s) 1091
BpuEI CTTGAG 2 cut(s) 197, 524
BpuMI CCSGG 5 cut(s) 287, 927, 928, 981, 1152
BsaHI GRCGYC 4 cut(s) 195, 234, 747, 851
BsaI GGTCTC 2 cut(s) 500, 800
BsaJI CCNNGG 5 cut(s) 253, 273, 291, 926, 1191
BsaWI WCCGGW 2 cut(s) 790, 809
BsaXI ACNNNNNCTCC 4 cut(s) 566, 596, 1129, 1159
Bse118I RCCGGY 3 cut(s) 230, 551, 809
Bse1I ACTGG 3 cut(s) 238, 308, 1161
BseBI CCWGG 2 cut(s) 254, 293
BseDI CCNNGG 5 cut(s) 253, 273, 291, 926, 1191
BseMII CTCAG 3 cut(s) 752, 911, 1247
BseNI ACTGG 3 cut(s) 238, 308, 1161
BseRI GAGGAG 1 cut(s) 401
BseSI GKGCMC 2 cut(s) 707, 914
BseX3I CGGCCG 1 cut(s) 525
BseXI GCAGC 2 cut(s) 542, 754
Bsh1236I CGCG 3 cut(s) 863, 1034, 1193
Bsh1285I CGRYCG 1 cut(s) 528
BshNI GGYRCC 2 cut(s) 652, 704
BshTI ACCGGT 1 cut(s) 809
BsiEI CGRYCG 1 cut(s) 528
BsiHKCI CYCGRG 2 cut(s) 926, 1084
BsmAI GTCTC 3 cut(s) 451, 500, 800
BsmBI CGTCTC 1 cut(s) 451
Bso31I GGTCTC 2 cut(s) 500, 800
BsoBI CYCGRG 2 cut(s) 926, 1084
Bsp119I TTCGAA 1 cut(s) 1091
Bsp1286I GDGCHC 2 cut(s) 707, 914
Bsp143I GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
BspCNI CTCAG 3 cut(s) 751, 912, 1248
BspFNI CGCG 3 cut(s) 863, 1034, 1193
BspLI GGNNCC 3 cut(s) 654, 706, 985
BspMI ACCTGC 2 cut(s) 359, 640
BspPI GGATC 3 cut(s) 194, 562, 942
BspQI GCTCTTC 2 cut(s) 37, 737
BspT104I TTCGAA 1 cut(s) 1091
BspT107I GGYRCC 2 cut(s) 652, 704
BspTNI GGTCTC 2 cut(s) 500, 800
BsrFI RCCGGY 3 cut(s) 230, 551, 809
BsrI ACTGG 3 cut(s) 238, 308, 1161
BssAI RCCGGY 3 cut(s) 230, 551, 809
BssECI CCNNGG 5 cut(s) 253, 273, 291, 926, 1191
BssMI GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
BssNI GRCGYC 4 cut(s) 195, 234, 747, 851
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 254, 293
Bst4CI ACNGT 5 cut(s) 475, 1025, 1079, 1221, 1244
Bst6I CTCTTC 3 cut(s) 37, 677, 737
BstACI GRCGYC 4 cut(s) 195, 234, 747, 851
BstBI TTCGAA 1 cut(s) 1091
BstC8I GCNNGC 4 cut(s) 596, 692, 914, 1032
BstDEI CTNAG 4 cut(s) 645, 738, 920, 1256
BstDSI CCRYGG 1 cut(s) 1191
BstENI CCTNNNNNAGG 1 cut(s) 272
BstFNI CGCG 3 cut(s) 863, 1034, 1193
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 8 cut(s) 183, 202, 547, 570, 609, 744, 888, 937
BstMAI GTCTC 3 cut(s) 451, 500, 800
BstMBI GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
BstMCI CGRYCG 1 cut(s) 528
BstMWI GCNNNNNNNGC 3 cut(s) 767, 922, 1199
BstNI CCWGG 2 cut(s) 254, 293
BstSCI CCNGG 7 cut(s) 252, 285, 291, 925, 926, 979, 1150
BstSLI GKGCMC 2 cut(s) 707, 914
BstUI CGCG 3 cut(s) 863, 1034, 1193
BstV1I GCAGC 2 cut(s) 542, 754
BstV2I GAAGAC 1 cut(s) 943
BstX2I RGATCY 2 cut(s) 544, 934
BstYI RGATCY 2 cut(s) 544, 934
BstZI CGGCCG 1 cut(s) 525
BtgI CCRYGG 1 cut(s) 1191
BtrI CACGTC 1 cut(s) 393
BveI ACCTGC 2 cut(s) 359, 640
Cac8I GCNNGC 4 cut(s) 596, 692, 914, 1032
CaiI CAGNNNCTG 1 cut(s) 27
CfoI GCGC 1 cut(s) 772
Cfr10I RCCGGY 3 cut(s) 230, 551, 809
Cfr13I GGNCC 7 cut(s) 277, 289, 295, 325, 373, 924, 983
Cfr42I CCGCGG 1 cut(s) 1194
Cfr9I CCCGGG 1 cut(s) 926
CseI GACGC 5 cut(s) 203, 223, 418, 755, 859
Csp6I GTAC 3 cut(s) 265, 871, 1036
CspAI ACCGGT 1 cut(s) 809
CviAII CATG 2 cut(s) 421, 973
CviQI GTAC 3 cut(s) 265, 871, 1036
DdeI CTNAG 4 cut(s) 645, 738, 920, 1256
DpnI GATC 8 cut(s) 182, 201, 546, 569, 608, 743, 887, 936
DpnII GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
DrdI GACNNNNNNGTC 1 cut(s) 467
DseDI GACNNNNNNGTC 1 cut(s) 467
EaeI YGGCCR 3 cut(s) 109, 525, 815
EagI CGGCCG 1 cut(s) 525
Eam1104I CTCTTC 3 cut(s) 37, 677, 737
EarI CTCTTC 3 cut(s) 37, 677, 737
EciI GGCGGA 3 cut(s) 748, 1137, 1177
EclXI CGGCCG 1 cut(s) 525
Eco130I CCWWGG 1 cut(s) 273
Eco147I AGGCCT 2 cut(s) 218, 252
Eco31I GGTCTC 2 cut(s) 500, 800
Eco47I GGWCC 2 cut(s) 277, 373
Eco52I CGGCCG 1 cut(s) 525
Eco57I CTGAAG 1 cut(s) 4
Eco88I CYCGRG 2 cut(s) 926, 1084
EcoNI CCTNNNNNAGG 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 373
EcoRI GAATTC 2 cut(s) 88, 1093
EcoRII CCWGG 2 cut(s) 252, 291
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
Esp3I CGTCTC 1 cut(s) 451
FaeI CATG 2 cut(s) 424, 976
FaiI YATR 6 cut(s) 245, 422, 616, 728, 800, 974
FatI CATG 2 cut(s) 420, 972
FauI CCCGC 4 cut(s) 343, 424, 525, 1039
FbaI TGATCA 2 cut(s) 606, 885
Fnu4HI GCNGC 6 cut(s) 438, 556, 768, 917, 1191, 1253
Fsp4HI GCNGC 6 cut(s) 438, 556, 768, 917, 1191, 1253
FspBI CTAG 3 cut(s) 15, 764, 773
GlaI GCGC 1 cut(s) 771
GluI GCNGC 6 cut(s) 438, 556, 768, 917, 1191, 1253
HgaI GACGC 5 cut(s) 203, 223, 418, 755, 859
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 4 cut(s) 195, 234, 747, 851
Hin1II CATG 2 cut(s) 424, 976
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 3 cut(s) 698, 880, 1129
HphI GGTGA 9 cut(s) 97, 169, 262, 340, 370, 463, 469, 1066, 1138
Hpy166II GTNNAC 3 cut(s) 433, 754, 796
Hpy188I TCNGA 8 cut(s) 549, 567, 741, 805, 885, 934, 994, 1134
Hpy188III TCNNGA 4 cut(s) 458, 503, 604, 659
Hpy8I GTNNAC 3 cut(s) 433, 754, 796
Hpy99I CGWCG 9 cut(s) 146, 197, 365, 397, 526, 749, 833, 853, 1025
HpyAV CCTTC 5 cut(s) 141, 229, 391, 901, 1218
HpyCH4III ACNGT 5 cut(s) 475, 1025, 1079, 1221, 1244
HpyCH4IV ACGT 5 cut(s) 144, 318, 392, 666, 948
HpyCH4V TGCA 3 cut(s) 354, 424, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 767, 922, 1199
HpyF3I CTNAG 4 cut(s) 645, 738, 920, 1256
HpySE526I ACGT 5 cut(s) 144, 318, 392, 666, 948
Hsp92I GRCGYC 4 cut(s) 195, 234, 747, 851
Hsp92II CATG 2 cut(s) 424, 976
HspAI GCGC 1 cut(s) 770
Ksp22I TGATCA 2 cut(s) 606, 885
KspI CCGCGG 1 cut(s) 1194
Kzo9I GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
LguI GCTCTTC 2 cut(s) 37, 737
LmnI GCTCC 3 cut(s) 530, 845, 1070
Lsp1109I GCAGC 2 cut(s) 542, 754
LweI GCATC 3 cut(s) 180, 363, 567
MaeI CTAG 3 cut(s) 15, 764, 773
MaeII ACGT 5 cut(s) 144, 318, 392, 666, 948
MaeIII GTNAC 5 cut(s) 469, 475, 1073, 1079, 1195
MalI GATC 8 cut(s) 182, 201, 546, 569, 608, 743, 887, 936
MboI GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
MboII GAAGA 8 cut(s) 24, 349, 664, 724, 877, 916, 943, 1176
MflI RGATCY 2 cut(s) 544, 934
MhlI GDGCHC 2 cut(s) 707, 914
MluCI AATT 4 cut(s) 48, 88, 1093, 1179
MmeI TCCRAC 2 cut(s) 339, 912
MseI TTAA 2 cut(s) 780, 1248
MspA1I CMGCKG 3 cut(s) 919, 1193, 1255
MspR9I CCNGG 7 cut(s) 254, 287, 293, 927, 928, 981, 1152
MvaI CCWGG 2 cut(s) 254, 293
MvnI CGCG 3 cut(s) 863, 1034, 1193
MwoI GCNNNNNNNGC 3 cut(s) 767, 922, 1199
NciI CCSGG 5 cut(s) 287, 927, 928, 981, 1152
NdeII GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
NlaIII CATG 2 cut(s) 424, 976
NlaIV GGNNCC 3 cut(s) 654, 706, 985
NmuCI GTSAC 2 cut(s) 469, 475
NspV TTCGAA 1 cut(s) 1091
PaeR7I CTCGAG 1 cut(s) 1084
PaqCI CACCTGC 2 cut(s) 359, 640
PceI AGGCCT 2 cut(s) 218, 252
PciSI GCTCTTC 2 cut(s) 37, 737
PcsI WCGNNNNNNNCGW 4 cut(s) 366, 441, 518, 741
PfeI GAWTC 3 cut(s) 698, 880, 1129
PflFI GACNNNGTC 1 cut(s) 665
PinAI ACCGGT 1 cut(s) 809
PkrI GCNGC 6 cut(s) 439, 557, 769, 918, 1192, 1254
PpuMI RGGWCCY 1 cut(s) 373
Psp1406I AACGTT 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 373
Psp6I CCWGG 2 cut(s) 252, 291
PspGI CCWGG 2 cut(s) 252, 291
PspN4I GGNNCC 3 cut(s) 654, 706, 985
PspPI GGNCC 7 cut(s) 277, 289, 295, 325, 373, 924, 983
PspPPI RGGWCCY 1 cut(s) 373
PspXI VCTCGAGB 1 cut(s) 1084
PsrI GAACNNNNNNTAC 2 cut(s) 1072, 1104
PstNI CAGNNNCTG 1 cut(s) 27
PsuI RGATCY 2 cut(s) 544, 934
PsyI GACNNNGTC 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 1255
RsaI GTAC 3 cut(s) 266, 872, 1037
RsaNI GTAC 3 cut(s) 265, 871, 1036
SacII CCGCGG 1 cut(s) 1194
SapI GCTCTTC 2 cut(s) 37, 737
SaqAI TTAA 2 cut(s) 780, 1248
SatI GCNGC 6 cut(s) 438, 556, 768, 917, 1191, 1253
Sau3AI GATC 8 cut(s) 180, 199, 544, 567, 606, 741, 885, 934
Sau96I GGNCC 7 cut(s) 277, 289, 295, 325, 373, 924, 983
ScrFI CCNGG 7 cut(s) 254, 287, 293, 927, 928, 981, 1152
SduI GDGCHC 2 cut(s) 707, 914
SfaNI GCATC 3 cut(s) 180, 363, 567
Sfr274I CTCGAG 1 cut(s) 1084
Sfr303I CCGCGG 1 cut(s) 1194
SfuI TTCGAA 1 cut(s) 1091
SgrAI CRCCGGYG 1 cut(s) 230
SgrBI CCGCGG 1 cut(s) 1194
SinI GGWCC 2 cut(s) 277, 373
SlaI CTCGAG 1 cut(s) 1084
SmaI CCCGGG 1 cut(s) 928
SmlI CTYRAG 3 cut(s) 212, 503, 1084
SmoI CTYRAG 3 cut(s) 212, 503, 1084
Sse9I AATT 4 cut(s) 48, 88, 1093, 1179
SseBI AGGCCT 2 cut(s) 218, 252
SspMI CTAG 3 cut(s) 15, 764, 773
StuI AGGCCT 2 cut(s) 218, 252
StyD4I CCNGG 7 cut(s) 252, 285, 291, 925, 926, 979, 1150
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 5 cut(s) 475, 1025, 1079, 1221, 1244
TaiI ACGT 5 cut(s) 147, 321, 395, 669, 951
TaqI TCGA 5 cut(s) 459, 696, 744, 1085, 1091
TasI AATT 4 cut(s) 48, 88, 1093, 1179
TatI WGTACW 1 cut(s) 870
TauI GCSGC 3 cut(s) 440, 919, 1193
TfiI GAWTC 3 cut(s) 698, 880, 1129
Tru1I TTAA 2 cut(s) 780, 1248
Tru9I TTAA 2 cut(s) 780, 1248
TseFI GTSAC 2 cut(s) 469, 475
TseI GCWGC 3 cut(s) 555, 767, 1252
Tsp45I GTSAC 2 cut(s) 469, 475
TspDTI ATGAA 3 cut(s) 232, 989, 1200
TspGWI ACGGA 1 cut(s) 141
TspMI CCCGGG 1 cut(s) 926
Tth111I GACNNNGTC 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 277, 373
XagI CCTNNNNNAGG 1 cut(s) 272
XapI RAATTY 2 cut(s) 88, 1093
XhoI CTCGAG 1 cut(s) 1084
XmaI CCCGGG 1 cut(s) 926
XspI CTAG 3 cut(s) 15, 764, 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.