Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008640.1

Orthogroup ID

OG0013309

Physical Location & Seq

Genomic Coordinates Forward (+)

8532 .. 10628

Gene Structure 2097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008640.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

atggagccttctagcttctgttcttcaatgttctcactcgttctgctaatttcagggtttatgtacgctggggtggtgaattcaatcggaattaactacggccaaatcgcaaacaacttaccttcgccggacgcggtggtgccgttggccaagtccatcggaatcaccaggatcaagctctacgacgccgatcccaaggtgctgaaggcgttcgccaacagcggagtcgagttcacagtgtgcgtggggaatgagtacctcgccaagatccaagacccgggcaaggcccaggagtgggtcaagtccaacgtccaggctttcatgccggccaccaagatcacctgcatcttcgtcggaaacgaagtcctcaccttcaacgacacgaccatgaccggcaacctcttcccggcgatgcagagcatccacaccgccctcgtcactctgggcctggacaagcaggtcgccgtcaccaccgcccattccctctccattctcgaaacctcgttcccgccgtcggccggagcattccgccgggatctgaaaaactgcatatctccgatcctcgatttccacgccaaaaccggatctccgttcctgatcaacgcctacccttacttcgcctacaaatcgaaccctaaacaagtgcccctggactacgtcctcttccagcccaacgccggttcgctggatccggccaccaatctccactacgacaacatgctcttcgcccaaatcgacgccgtctacgccgccctggcatccctcggctacaagaagcttccggtacacatctccgagaccgggtggccgtccaaaggcgacgaggacgaggccggagccacgccggagaatgcgaagaagtacaatgggaatctgatcaagctcatttgccagaaaaagggcacgccgttgaggccgagctcggatctgaacatttacgtcttcgctctgttcaacgagaacatgaaacccggcccgagctccgagaggaacttcgggcttttgaaacccgacggaactccggcgtactcgcttggattcgcgttgaacagtagctcaagcggcaacggtaacagtaacagctcatccgggtcgggtcagggtgggattaacccgattactattggatcctcgccacccggttcttccagtaacggctacttgtccatttcatccgcccccgccactgagaggtaccatttgatcggatcgattcccatgatgtggttggtgctgttgttgagaatgagggaaaataggagaggctacttgagaactaggcaaaggagaattattttatctatctcaataactctagtcggtagggtttgtggaggaggctggagaggaccaccattattcgtaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

456

Amino Acids

49.13

Weight (kDa)

9.11

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32860
fragaria_vesca	FvH4_5g10600 FvH4_5g10600 FvH4_5g10600
malus_domestica	MD06G1122000.v1.1 MD14G1138400.v1.1
prunus_persica	Prupe.5G132700_v2.0.a1 Prupe.5G132700_v2.0.a1
pyrus_communis	pycom06g11310 pycom14g11350
rosa_chinensis	RchiOBHm_Chr7g0187541
rosa_laevigata	RLG00000004772
rosa_multiflora	Rmu_sc0008640.1_g000003 Rmu_ssc0000110.1_g000023
rosa_roxburghii	Rroxscaffold_3G00267340
rosa_rugosa	Rorug06G0482600.1
rosa_samantha	Rh7CG087900 Rh7DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
AasI	GACNNNNNNGTC	1 cut(s)	458
Acc36I	ACCTGC	2 cut(s)	350, 448
Acc65I	GGTACC	1 cut(s)	1194
AccB1I	GGYRCC	2 cut(s)	139, 1194
AccB7I	CCANNNNNTGG	1 cut(s)	1224
AccI	GTMKAC	1 cut(s)	744
AccII	CGCG	2 cut(s)	134, 1043
AcoI	YGGCCR	6 cut(s)	100, 147, 327, 516, 693, 806
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	224
AcyI	GRCGYC	2 cut(s)	186, 738
AdeI	CACNNNGTG	1 cut(s)	240
AfaI	GTAC	6 cut(s)	65, 257, 786, 863, 1028, 1196
AgsI	TTSAA	6 cut(s)	27, 84, 376, 955, 1006, 1048
AjnI	CCWGG	6 cut(s)	167, 288, 312, 447, 648, 753
AluBI	AGCT	8 cut(s)	15, 178, 778, 883, 921, 981, 1056, 1083
AluI	AGCT	8 cut(s)	15, 178, 778, 883, 921, 981, 1056, 1083
Alw21I	GWGCWC	2 cut(s)	923, 983
Alw26I	GTCTC	1 cut(s)	791
Ama87I	CYCGRG	2 cut(s)	277, 976
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	1194
AspS9I	GGNCC	4 cut(s)	286, 445, 974, 1349
AsuC2I	CCSGG	8 cut(s)	278, 279, 407, 533, 802, 972, 1090, 1140
AsuHPI	GGTGA	5 cut(s)	88, 157, 331, 361, 460
AvaI	CYCGRG	2 cut(s)	277, 976
AvaII	GGWCC	1 cut(s)	1349
BaeGI	GKGCMC	2 cut(s)	648, 905
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	2 cut(s)	688, 1127
BanI	GGYRCC	2 cut(s)	139, 1194
BanII	GRGCYC	2 cut(s)	923, 983
BbsI	GAAGAC	1 cut(s)	934
Bbv12I	GWGCWC	2 cut(s)	923, 983
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	8 cut(s)	115, 127, 449, 496, 725, 793, 892, 1171
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	6 cut(s)	169, 290, 314, 449, 650, 755
BclI	TGATCA	2 cut(s)	597, 876
BcnI	CCSGG	8 cut(s)	278, 279, 407, 533, 802, 972, 1090, 1140
BcoDI	GTCTC	1 cut(s)	791
BfaI	CTAG	3 cut(s)	12, 1278, 1316
BfuAI	ACCTGC	2 cut(s)	350, 448
BglI	GCCNNNNNGGC	2 cut(s)	755, 913
BisI	GCNGC	2 cut(s)	750, 1063
BlsI	GCNGC	2 cut(s)	751, 1064
Bme18I	GGWCC	1 cut(s)	1349
BmeT110I	CYCGRG	2 cut(s)	277, 976
BmgT120I	GGNCC	4 cut(s)	286, 445, 974, 1349
BmiI	GGNNCC	6 cut(s)	6, 141, 690, 838, 1129, 1196
BmsI	GCATC	4 cut(s)	354, 402, 429, 767
BpiI	GAAGAC	1 cut(s)	934
BpmI	CTGGAG	1 cut(s)	1363
BpuEI	CTTGAG	2 cut(s)	1042, 1291
BpuMI	CCSGG	8 cut(s)	278, 279, 407, 533, 802, 972, 1090, 1140
Bsa29I	ATCGAT	1 cut(s)	1211
BsaHI	GRCGYC	2 cut(s)	186, 738
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	6 cut(s)	195, 277, 288, 648, 753, 763
BsaWI	WCCGGW	2 cut(s)	581, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	571, 601
Bse118I	RCCGGY	3 cut(s)	325, 392, 677
Bse1I	ACTGG	1 cut(s)	1149
BseBI	CCWGG	6 cut(s)	169, 290, 314, 449, 650, 755
BseCI	ATCGAT	1 cut(s)	1211
BseDI	CCNNGG	6 cut(s)	195, 277, 288, 648, 753, 763
BseGI	GGATG	4 cut(s)	420, 758, 1085, 1172
BseMII	CTCAG	1 cut(s)	1179
BseNI	ACTGG	1 cut(s)	1149
BseRI	GAGGAG	1 cut(s)	1350
BseSI	GKGCMC	2 cut(s)	648, 905
BseX3I	CGGCCG	1 cut(s)	516
BseYI	CCCAGC	1 cut(s)	68
Bsh1236I	CGCG	2 cut(s)	134, 1043
Bsh1285I	CGRYCG	1 cut(s)	519
BshNI	GGYRCC	2 cut(s)	139, 1194
BshVI	ATCGAT	1 cut(s)	1211
BsiEI	CGRYCG	1 cut(s)	519
BsiHKAI	GWGCWC	2 cut(s)	923, 983
BsiHKCI	CYCGRG	2 cut(s)	277, 976
BsmAI	GTCTC	1 cut(s)	791
BsmI	GAATGC	2 cut(s)	524, 856
Bso31I	GGTCTC	1 cut(s)	791
BsoBI	CYCGRG	2 cut(s)	277, 976
Bsp1286I	GDGCHC	4 cut(s)	648, 905, 923, 983
BspCNI	CTCAG	1 cut(s)	1180
BspDI	ATCGAT	1 cut(s)	1211
BspFNI	CGCG	2 cut(s)	134, 1043
BspLI	GGNNCC	6 cut(s)	6, 141, 690, 838, 1129, 1196
BspMI	ACCTGC	2 cut(s)	350, 448
BspQI	GCTCTTC	1 cut(s)	728
BspT107I	GGYRCC	2 cut(s)	139, 1194
BspTNI	GGTCTC	1 cut(s)	791
BsrFI	RCCGGY	3 cut(s)	325, 392, 677
BsrI	ACTGG	1 cut(s)	1149
BssAI	RCCGGY	3 cut(s)	325, 392, 677
BssECI	CCNNGG	6 cut(s)	195, 277, 288, 648, 753, 763
BssNI	GRCGYC	2 cut(s)	186, 738
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	6 cut(s)	169, 290, 314, 449, 650, 755
Bst4CI	ACNGT	4 cut(s)	238, 1052, 1070, 1076
Bst6I	CTCTTC	3 cut(s)	407, 668, 728
BstACI	GRCGYC	2 cut(s)	186, 738
BstC8I	GCNNGC	2 cut(s)	327, 905
BstDEI	CTNAG	1 cut(s)	1188
BstF5I	GGATG	4 cut(s)	420, 758, 1085, 1172
BstFNI	CGCG	2 cut(s)	134, 1043
BstMAI	GTCTC	1 cut(s)	791
BstMCI	CGRYCG	1 cut(s)	519
BstMWI	GCNNNNNNNGC	4 cut(s)	746, 755, 913, 1062
BstNI	CCWGG	6 cut(s)	169, 290, 314, 449, 650, 755
BstNSI	RCATGY	1 cut(s)	721
BstSLI	GKGCMC	2 cut(s)	648, 905
BstUI	CGCG	2 cut(s)	134, 1043
BstV2I	GAAGAC	1 cut(s)	934
BstX2I	RGATCY	6 cut(s)	267, 535, 584, 688, 925, 1127
BstYI	RGATCY	6 cut(s)	267, 535, 584, 688, 925, 1127
BstZI	CGGCCG	1 cut(s)	516
Bsu15I	ATCGAT	1 cut(s)	1211
BsuTUI	ATCGAT	1 cut(s)	1211
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	4 cut(s)	420, 758, 1085, 1172
BtsIMutI	CAGTG	2 cut(s)	243, 1185
BveI	ACCTGC	2 cut(s)	350, 448
Cac8I	GCNNGC	2 cut(s)	327, 905
Cfr10I	RCCGGY	3 cut(s)	325, 392, 677
Cfr13I	GGNCC	4 cut(s)	286, 445, 974, 1349
Cfr9I	CCCGGG	1 cut(s)	277
ClaI	ATCGAT	1 cut(s)	1211
CseI	GACGC	3 cut(s)	140, 194, 746
Csp6I	GTAC	6 cut(s)	64, 256, 785, 862, 1027, 1195
CviAII	CATG	5 cut(s)	322, 388, 718, 964, 1219
CviQI	GTAC	6 cut(s)	64, 256, 785, 862, 1027, 1195
DdeI	CTNAG	1 cut(s)	1188
DraIII	CACNNNGTG	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	458
DseDI	GACNNNNNNGTC	1 cut(s)	458
EaeI	YGGCCR	6 cut(s)	100, 147, 327, 516, 693, 806
EagI	CGGCCG	1 cut(s)	516
Eam1104I	CTCTTC	3 cut(s)	407, 668, 728
EarI	CTCTTC	3 cut(s)	407, 668, 728
EciI	GGCGGA	2 cut(s)	518, 1165
Ecl136II	GAGCTC	2 cut(s)	921, 981
EclXI	CGGCCG	1 cut(s)	516
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	2 cut(s)	923, 983
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	1349
Eco52I	CGGCCG	1 cut(s)	516
Eco53kI	GAGCTC	2 cut(s)	921, 981
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	2 cut(s)	277, 976
EcoICRI	GAGCTC	2 cut(s)	921, 981
EcoRI	GAATTC	1 cut(s)	79
EcoRII	CCWGG	6 cut(s)	167, 288, 312, 447, 648, 753
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	2 cut(s)	923, 983
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	5 cut(s)	325, 391, 721, 967, 1222
FaiI	YATR	7 cut(s)	62, 323, 389, 551, 719, 965, 1220
FatI	CATG	5 cut(s)	321, 387, 717, 963, 1218
FauI	CCCGC	2 cut(s)	516, 1189
FbaI	TGATCA	2 cut(s)	597, 876
FblI	GTMKAC	1 cut(s)	744
Fnu4HI	GCNGC	2 cut(s)	750, 1063
FokI	GGATG	4 cut(s)	407, 745, 1072, 1159
FriOI	GRGCYC	2 cut(s)	923, 983
Fsp4HI	GCNGC	2 cut(s)	750, 1063
FspBI	CTAG	3 cut(s)	12, 1278, 1316
GluI	GCNGC	2 cut(s)	750, 1063
GsaI	CCCAGC	1 cut(s)	72
GsuI	CTGGAG	1 cut(s)	1363
HgaI	GACGC	3 cut(s)	140, 194, 746
Hin1I	GRCGYC	2 cut(s)	186, 738
Hin1II	CATG	5 cut(s)	325, 391, 721, 967, 1222
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	5 cut(s)	162, 225, 871, 1038, 1213
HphI	GGTGA	5 cut(s)	88, 157, 331, 361, 460
Hpy166II	GTNNAC	3 cut(s)	234, 745, 787
Hpy188III	TCNNGA	2 cut(s)	494, 595
Hpy8I	GTNNAC	3 cut(s)	234, 745, 787
Hpy99I	CGWCG	6 cut(s)	188, 356, 517, 740, 824, 1016
HpyAV	CCTTC	4 cut(s)	18, 132, 199, 382
HpyCH4III	ACNGT	4 cut(s)	238, 1052, 1070, 1076
HpyCH4IV	ACGT	3 cut(s)	309, 657, 939
HpyCH4V	TGCA	3 cut(s)	345, 415, 549
HpyF10VI	GCNNNNNNNGC	4 cut(s)	746, 755, 913, 1062
HpyF3I	CTNAG	1 cut(s)	1188
HpySE526I	ACGT	3 cut(s)	309, 657, 939
Hsp92I	GRCGYC	2 cut(s)	186, 738
Hsp92II	CATG	5 cut(s)	325, 391, 721, 967, 1222
KpnI	GGTACC	1 cut(s)	1198
KroI	GCCGGC	1 cut(s)	325
KroNI	GCCGGC	1 cut(s)	327
Ksp22I	TGATCA	2 cut(s)	597, 876
LguI	GCTCTTC	1 cut(s)	728
LmnI	GCTCC	4 cut(s)	4, 521, 836, 986
LweI	GCATC	4 cut(s)	354, 402, 429, 767
MaeI	CTAG	3 cut(s)	12, 1278, 1316
MaeII	ACGT	3 cut(s)	309, 657, 939
MaeIII	GTNAC	5 cut(s)	436, 466, 1070, 1076, 1151
MboII	GAAGA	8 cut(s)	15, 340, 394, 655, 715, 868, 934, 1137
MflI	RGATCY	6 cut(s)	267, 535, 584, 688, 925, 1127
MhlI	GDGCHC	4 cut(s)	648, 905, 923, 983
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	4 cut(s)	48, 79, 90, 1290
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	234
MmeI	TCCRAC	2 cut(s)	330, 334
Mox20I	TGGCCA	1 cut(s)	149
MroNI	GCCGGC	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	209
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	93, 1110
MslI	CAYNNNNRTG	1 cut(s)	386
Msp20I	TGGCCA	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	222
Mva1269I	GAATGC	2 cut(s)	524, 856
MvaI	CCWGG	6 cut(s)	169, 290, 314, 449, 650, 755
MvnI	CGCG	2 cut(s)	134, 1043
MwoI	GCNNNNNNNGC	4 cut(s)	746, 755, 913, 1062
NaeI	GCCGGC	1 cut(s)	327
NciI	CCSGG	8 cut(s)	278, 279, 407, 533, 802, 972, 1090, 1140
NgoMIV	GCCGGC	1 cut(s)	325
NlaIII	CATG	5 cut(s)	325, 391, 721, 967, 1222
NlaIV	GGNNCC	6 cut(s)	6, 141, 690, 838, 1129, 1196
NmeAIII	GCCGAG	2 cut(s)	744, 942
NmuCI	GTSAC	2 cut(s)	436, 466
NspI	RCATGY	1 cut(s)	721
PaqCI	CACCTGC	1 cut(s)	350
PciSI	GCTCTTC	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	3 cut(s)	357, 509, 732
PctI	GAATGC	2 cut(s)	524, 856
PdiI	GCCGGC	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	4 cut(s)	162, 871, 1038, 1213
PflFI	GACNNNGTC	2 cut(s)	656, 740
PflMI	CCANNNNNTGG	1 cut(s)	1224
PkrI	GCNGC	2 cut(s)	751, 1064
PleI	GAGTC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	233
Psp124BI	GAGCTC	2 cut(s)	923, 983
Psp6I	CCWGG	6 cut(s)	167, 288, 312, 447, 648, 753
PspFI	CCCAGC	1 cut(s)	68
PspGI	CCWGG	6 cut(s)	167, 288, 312, 447, 648, 753
PspN4I	GGNNCC	6 cut(s)	6, 141, 690, 838, 1129, 1196
PspPI	GGNCC	4 cut(s)	286, 445, 974, 1349
PsuI	RGATCY	6 cut(s)	267, 535, 584, 688, 925, 1127
PsyI	GACNNNGTC	2 cut(s)	656, 740
RsaI	GTAC	6 cut(s)	65, 257, 786, 863, 1028, 1196
RsaNI	GTAC	6 cut(s)	64, 256, 785, 862, 1027, 1195
RseI	CAYNNNNRTG	1 cut(s)	386
SacI	GAGCTC	2 cut(s)	923, 983
SapI	GCTCTTC	1 cut(s)	728
SaqAI	TTAA	2 cut(s)	93, 1110
SatI	GCNGC	2 cut(s)	750, 1063
Sau96I	GGNCC	4 cut(s)	286, 445, 974, 1349
SchI	GAGTC	1 cut(s)	234
SduI	GDGCHC	4 cut(s)	648, 905, 923, 983
SfaNI	GCATC	4 cut(s)	354, 402, 429, 767
SinI	GGWCC	1 cut(s)	1349
SmaI	CCCGGG	1 cut(s)	279
SmiMI	CAYNNNNRTG	1 cut(s)	386
SmlI	CTYRAG	2 cut(s)	1057, 1270
SmoI	CTYRAG	2 cut(s)	1057, 1270
Sse9I	AATT	4 cut(s)	48, 79, 90, 1290
SspMI	CTAG	3 cut(s)	12, 1278, 1316
SstI	GAGCTC	2 cut(s)	923, 983
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	4 cut(s)	238, 1052, 1070, 1076
TaiI	ACGT	3 cut(s)	312, 660, 942
TaqI	TCGA	6 cut(s)	228, 495, 564, 629, 735, 1211
TasI	AATT	4 cut(s)	48, 79, 90, 1290
TatI	WGTACW	1 cut(s)	861
TauI	GCSGC	2 cut(s)	752, 1065
TfiI	GAWTC	4 cut(s)	162, 871, 1038, 1213
Tru1I	TTAA	2 cut(s)	93, 1110
Tru9I	TTAA	2 cut(s)	93, 1110
TscAI	CASTG	2 cut(s)	243, 1192
TseFI	GTSAC	2 cut(s)	436, 466
Tsp45I	GTSAC	2 cut(s)	436, 466
TspDTI	ATGAA	3 cut(s)	310, 980, 1161
TspGWI	ACGGA	2 cut(s)	579, 1029
TspMI	CCCGGG	1 cut(s)	277
TspRI	CASTG	2 cut(s)	243, 1192
Tth111I	GACNNNGTC	2 cut(s)	656, 740
Van91I	CCANNNNNTGG	1 cut(s)	1224
VpaK11BI	GGWCC	1 cut(s)	1349
XapI	RAATTY	1 cut(s)	79
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1225
XmaI	CCCGGG	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	744
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	3 cut(s)	12, 1278, 1316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.