RchiOBHm_Chr7g0187541

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013309
Physical Location & Seq
Reverse (-)
7346256 .. 7348833
2578 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16741

Sequence Viewer

Length: 1257 bp
ATGGAGCCTTCTAGCTTCTGTTCTTCAATGTTCTCACTCGTTCTGCTAATTTCAGGGTTTATGTACGCTGGGGTGGTGAATTCAATCGGAATTAACTACGGCCAAATCGCAAACAACTTACCTTCGCCGGACGCGGTGGTGCCGTTGGCCAAGTCCATCGGAATCACCAGGATCAAGCTGTACGACGCCGATCCCAAGGTGCTGAAGGCGTTCGCCAACAGCGGAGTCGAGTTCACAGTGTGCGTGGGGAATGAGTACCTCGCCAAGATCCAAGACCCGGGCAAGGCCCAGGAGTGGGTCAAGTCCAACGTCCAGGCTTTCATGCCGGCCACCAAGATCACCTGCATCTTCGTCGGAAACGAAGTCCTCACCTTCAACGACACGACCATGACCGGCAACCTCTTCCCGGCGATGCAGAGCATCCACACCGCCCTCGTCACTCTGGGCCTGGACAAGCAGGTCGCCGTCACCACCGCCCATTCCCTCTCCATTCTCGAAACCTCGTTCCCGCCGTCGGCCGGAGCATTCCGCCGGGATCTGAAAAACTGCATATCTCCGATCCTCGATTTCCACGCCAAAACCGGATCTCCGTTCCTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCTAAACAAGTGCCGCTGGACTACGTCCTCTTCCAGCCCAACGCCGGTTCGCTGGATCCGGCCACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCGTCTACGCCGCCCTGGCATCCCTCGGCTACAAGAAGCTTCCGGTACACATCTCCGAGACCGGGTGGCCGTCCAAAGGCGACGAGGACGAGGCCGGAGCCACGCCGGAGAATGCGAAGAAGTACAATGGGAATCTGATCAAGCTCATTTGCCAGAAAAAGGGCACGCCGTTGAGGCCGAGCTCGGATCTGAACATTTACGTCTTCGCTCTGTTCAACGAGAACATGAAACCCGGCCCGAGCTCCGAGAGGAACTTCGGGCTTTTGAAACCCGACGGAACTCCGGCGTACTCGCTTGGATTCGCGTTGAACAGTAGCTCAAGCGGTAACGGTAACAGTAACAGCTCATCCGGGTCGGGTCAGGGCGGGATTAACCCGATTACTATTGGATCGTCGCCACCCGGTTCTTCCAGTAACGGCTACTTGTCCATTTCATCCGCCCCCGCCACTGAGAGGTACCATTTGATCGGATCGATTCCCATGATGTGGTTGGTGCTGTTGTTGGTAAAAGTCCTTTGA

Protein Analysis

418

Amino Acids

44.67

Weight (kDa)

7.6

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 2.7e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
AasI GACNNNNNNGTC 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 350, 448
Acc65I GGTACC 1 cut(s) 1194
AccB1I GGYRCC 2 cut(s) 139, 1194
AccB7I CCANNNNNTGG 1 cut(s) 1224
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 134, 1043
AcoI YGGCCR 6 cut(s) 100, 147, 327, 516, 693, 806
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 186, 738
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 7 cut(s) 65, 182, 257, 786, 863, 1028, 1196
AgsI TTSAA 6 cut(s) 27, 84, 376, 955, 1006, 1048
AjnI CCWGG 5 cut(s) 167, 288, 312, 447, 753
AluBI AGCT 8 cut(s) 15, 178, 778, 883, 921, 981, 1056, 1083
AluI AGCT 8 cut(s) 15, 178, 778, 883, 921, 981, 1056, 1083
Alw21I GWGCWC 2 cut(s) 923, 983
Alw26I GTCTC 1 cut(s) 791
Ama87I CYCGRG 2 cut(s) 277, 976
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 209
Asp718I GGTACC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 286, 445, 974
AsuC2I CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
AsuHPI GGTGA 5 cut(s) 88, 157, 331, 361, 460
AvaI CYCGRG 2 cut(s) 277, 976
BaeGI GKGCMC 1 cut(s) 905
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 139, 1194
BanII GRGCYC 2 cut(s) 923, 983
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 2 cut(s) 923, 983
BccI CCATC 1 cut(s) 164
BceAI ACGGC 8 cut(s) 115, 127, 449, 496, 725, 793, 892, 1171
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 5 cut(s) 169, 290, 314, 449, 755
BclI TGATCA 2 cut(s) 597, 876
BcnI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 2 cut(s) 350, 448
BglI GCCNNNNNGGC 2 cut(s) 755, 913
BisI GCNGC 2 cut(s) 647, 750
BlsI GCNGC 2 cut(s) 648, 751
BmeT110I CYCGRG 2 cut(s) 277, 976
BmgT120I GGNCC 3 cut(s) 286, 445, 974
BmiI GGNNCC 5 cut(s) 6, 141, 690, 838, 1196
BmsI GCATC 4 cut(s) 354, 402, 429, 767
BpiI GAAGAC 1 cut(s) 934
BpuEI CTTGAG 1 cut(s) 1042
BpuMI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
Bsa29I ATCGAT 1 cut(s) 1211
BsaHI GRCGYC 2 cut(s) 186, 738
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BsaWI WCCGGW 2 cut(s) 581, 781
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bse118I RCCGGY 3 cut(s) 325, 392, 677
Bse1I ACTGG 1 cut(s) 1149
BseBI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BseCI ATCGAT 1 cut(s) 1211
BseDI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BseGI GGATG 4 cut(s) 420, 758, 1085, 1172
BseMII CTCAG 1 cut(s) 1179
BseNI ACTGG 1 cut(s) 1149
BseSI GKGCMC 1 cut(s) 905
BseX3I CGGCCG 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 134, 1043
Bsh1285I CGRYCG 1 cut(s) 519
BshNI GGYRCC 2 cut(s) 139, 1194
BshVI ATCGAT 1 cut(s) 1211
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 923, 983
BsiHKCI CYCGRG 2 cut(s) 277, 976
BsmAI GTCTC 1 cut(s) 791
BsmI GAATGC 2 cut(s) 524, 856
Bso31I GGTCTC 1 cut(s) 791
BsoBI CYCGRG 2 cut(s) 277, 976
Bsp1286I GDGCHC 3 cut(s) 905, 923, 983
BspCNI CTCAG 1 cut(s) 1180
BspDI ATCGAT 1 cut(s) 1211
BspFNI CGCG 2 cut(s) 134, 1043
BspLI GGNNCC 5 cut(s) 6, 141, 690, 838, 1196
BspMI ACCTGC 2 cut(s) 350, 448
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 2 cut(s) 139, 1194
BspTNI GGTCTC 1 cut(s) 791
BsrFI RCCGGY 3 cut(s) 325, 392, 677
BsrI ACTGG 1 cut(s) 1149
BssAI RCCGGY 3 cut(s) 325, 392, 677
BssECI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BssNI GRCGYC 2 cut(s) 186, 738
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 5 cut(s) 169, 290, 314, 449, 755
Bst4CI ACNGT 4 cut(s) 238, 1052, 1070, 1076
Bst6I CTCTTC 3 cut(s) 407, 668, 728
BstACI GRCGYC 2 cut(s) 186, 738
BstC8I GCNNGC 2 cut(s) 327, 905
BstDEI CTNAG 1 cut(s) 1188
BstF5I GGATG 4 cut(s) 420, 758, 1085, 1172
BstFNI CGCG 2 cut(s) 134, 1043
BstMAI GTCTC 1 cut(s) 791
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 746, 755, 913
BstNI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BstNSI RCATGY 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 905
BstUI CGCG 2 cut(s) 134, 1043
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstYI RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstZI CGGCCG 1 cut(s) 516
Bsu15I ATCGAT 1 cut(s) 1211
BsuTUI ATCGAT 1 cut(s) 1211
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 4 cut(s) 420, 758, 1085, 1172
BtsIMutI CAGTG 2 cut(s) 243, 1185
BveI ACCTGC 2 cut(s) 350, 448
Cac8I GCNNGC 2 cut(s) 327, 905
Cfr10I RCCGGY 3 cut(s) 325, 392, 677
Cfr13I GGNCC 3 cut(s) 286, 445, 974
Cfr9I CCCGGG 1 cut(s) 277
ClaI ATCGAT 1 cut(s) 1211
CseI GACGC 3 cut(s) 140, 194, 746
Csp6I GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1195
CviAII CATG 5 cut(s) 322, 388, 718, 964, 1219
CviQI GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1195
DdeI CTNAG 1 cut(s) 1188
DraIII CACNNNGTG 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 6 cut(s) 100, 147, 327, 516, 693, 806
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 407, 668, 728
EarI CTCTTC 3 cut(s) 407, 668, 728
EciI GGCGGA 2 cut(s) 518, 1165
Ecl136II GAGCTC 2 cut(s) 921, 981
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 923, 983
Eco31I GGTCTC 1 cut(s) 791
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 2 cut(s) 921, 981
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 2 cut(s) 277, 976
EcoICRI GAGCTC 2 cut(s) 921, 981
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 5 cut(s) 167, 288, 312, 447, 753
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 923, 983
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 5 cut(s) 325, 391, 721, 967, 1222
FaiI YATR 7 cut(s) 62, 323, 389, 551, 719, 965, 1220
FatI CATG 5 cut(s) 321, 387, 717, 963, 1218
FauI CCCGC 3 cut(s) 516, 1097, 1189
FbaI TGATCA 2 cut(s) 597, 876
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 2 cut(s) 647, 750
FokI GGATG 4 cut(s) 407, 745, 1072, 1159
FriOI GRGCYC 2 cut(s) 923, 983
Fsp4HI GCNGC 2 cut(s) 647, 750
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 647, 750
GsaI CCCAGC 1 cut(s) 72
HgaI GACGC 3 cut(s) 140, 194, 746
Hin1I GRCGYC 2 cut(s) 186, 738
Hin1II CATG 5 cut(s) 325, 391, 721, 967, 1222
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 5 cut(s) 162, 225, 871, 1038, 1213
HphI GGTGA 5 cut(s) 88, 157, 331, 361, 460
Hpy166II GTNNAC 3 cut(s) 234, 745, 787
Hpy188III TCNNGA 2 cut(s) 494, 595
Hpy8I GTNNAC 3 cut(s) 234, 745, 787
Hpy99I CGWCG 7 cut(s) 188, 356, 517, 740, 824, 1016, 1135
HpyAV CCTTC 4 cut(s) 18, 132, 199, 382
HpyCH4III ACNGT 4 cut(s) 238, 1052, 1070, 1076
HpyCH4IV ACGT 3 cut(s) 309, 657, 939
HpyCH4V TGCA 3 cut(s) 345, 415, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 746, 755, 913
HpyF3I CTNAG 1 cut(s) 1188
HpySE526I ACGT 3 cut(s) 309, 657, 939
Hsp92I GRCGYC 2 cut(s) 186, 738
Hsp92II CATG 5 cut(s) 325, 391, 721, 967, 1222
KpnI GGTACC 1 cut(s) 1198
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 597, 876
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 4 cut(s) 4, 521, 836, 986
LweI GCATC 4 cut(s) 354, 402, 429, 767
MaeI CTAG 1 cut(s) 12
MaeII ACGT 3 cut(s) 309, 657, 939
MaeIII GTNAC 6 cut(s) 436, 466, 1064, 1070, 1076, 1151
MboII GAAGA 8 cut(s) 15, 340, 394, 655, 715, 868, 934, 1137
MflI RGATCY 5 cut(s) 267, 535, 584, 688, 925
MhlI GDGCHC 3 cut(s) 905, 923, 983
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 3 cut(s) 48, 79, 90
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 330, 334
Mox20I TGGCCA 1 cut(s) 149
MroNI GCCGGC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 149
MseI TTAA 2 cut(s) 93, 1110
MslI CAYNNNNRTG 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 222, 649
Mva1269I GAATGC 2 cut(s) 524, 856
MvaI CCWGG 5 cut(s) 169, 290, 314, 449, 755
MvnI CGCG 2 cut(s) 134, 1043
MwoI GCNNNNNNNGC 3 cut(s) 746, 755, 913
NaeI GCCGGC 1 cut(s) 327
NciI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 5 cut(s) 325, 391, 721, 967, 1222
NlaIV GGNNCC 5 cut(s) 6, 141, 690, 838, 1196
NmeAIII GCCGAG 2 cut(s) 744, 942
NmuCI GTSAC 2 cut(s) 436, 466
NspI RCATGY 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 3 cut(s) 357, 509, 732
PctI GAATGC 2 cut(s) 524, 856
PdiI GCCGGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 4 cut(s) 162, 871, 1038, 1213
PflFI GACNNNGTC 2 cut(s) 656, 740
PflMI CCANNNNNTGG 1 cut(s) 1224
PkrI GCNGC 2 cut(s) 648, 751
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Psp124BI GAGCTC 2 cut(s) 923, 983
Psp6I CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspN4I GGNNCC 5 cut(s) 6, 141, 690, 838, 1196
PspPI GGNCC 3 cut(s) 286, 445, 974
PsuI RGATCY 5 cut(s) 267, 535, 584, 688, 925
PsyI GACNNNGTC 2 cut(s) 656, 740
RsaI GTAC 7 cut(s) 65, 182, 257, 786, 863, 1028, 1196
RsaNI GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1195
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 2 cut(s) 923, 983
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 2 cut(s) 93, 1110
SatI GCNGC 2 cut(s) 647, 750
Sau96I GGNCC 3 cut(s) 286, 445, 974
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 3 cut(s) 905, 923, 983
SfaNI GCATC 4 cut(s) 354, 402, 429, 767
SmaI CCCGGG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 1057
SmoI CTYRAG 1 cut(s) 1057
Sse9I AATT 3 cut(s) 48, 79, 90
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 2 cut(s) 923, 983
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 4 cut(s) 238, 1052, 1070, 1076
TaiI ACGT 3 cut(s) 312, 660, 942
TaqI TCGA 6 cut(s) 228, 495, 564, 629, 735, 1211
TasI AATT 3 cut(s) 48, 79, 90
TatI WGTACW 1 cut(s) 861
TauI GCSGC 2 cut(s) 649, 752
TfiI GAWTC 4 cut(s) 162, 871, 1038, 1213
Tru1I TTAA 2 cut(s) 93, 1110
Tru9I TTAA 2 cut(s) 93, 1110
TscAI CASTG 2 cut(s) 243, 1192
TseFI GTSAC 2 cut(s) 436, 466
Tsp45I GTSAC 2 cut(s) 436, 466
TspDTI ATGAA 3 cut(s) 310, 980, 1161
TspGWI ACGGA 2 cut(s) 579, 1029
TspMI CCCGGG 1 cut(s) 277
TspRI CASTG 2 cut(s) 243, 1192
Tth111I GACNNNGTC 2 cut(s) 656, 740
Van91I CCANNNNNTGG 1 cut(s) 1224
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 1 cut(s) 1225
XmaI CCCGGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.