Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0013309

Physical Location & Seq

Genomic Coordinates Reverse (-)

16631862 .. 16633475

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGCAGCCACCACTAGCTTCCCCTACTCCTCTGCAATTTTCCTTTCAATTCTCATCATTTCAGGGTTCATGTTTCCAGCAACGGTAAATTCAATGGGGATAAACTACGGCCAAATCGCCAACAACTTACCTTCTCCCGACGACGTCGTTCCGCTGGTGAAATCCATTGGCATCTCCAAGATCAAGCTCTACGATGCCGATCCCAAAGTCCTCAAAGCCTTCGCCAACACCGGCGTCGAGTTCATAGTGGGCCTCCCCAACGACTACCTTGCCAAGGTCCAGGACCCGGCCCAGGCCCAATCCTGGGTCAAGTCCAATGTCCAGGCCCATCTCCCCGCCACCAACATCACCTGCATCTTCGTCGGCAACGAGGTCCTCACCTTCAACGACACGTCGTTGAGCAACAATCTCCTCCCGGCAATGCAGAGCGTCCACACCGCCCTCGTCGGTCTTGGCCTCGACAAGCAAGTCACCGTCACCACCGCCCACTCCCTCTCCATTCTCCAGACCTCGTATCCGCCGTCCGCCGGCGCTTTCCGCCGAGATCTGACCGGCTGCATCACTCCGATCCTCAATTTCCACGCCAAAACCGGATCGCCGTTCCTGATCAATGCCTACCCTTACTTCGCTTACAAATCGAACCCTAAGCAAGTGCCGCTCGAGTACGTCCTCTTCCAGCCGAACTCCGGCTCCCTTGATCCTGCCACCAATCTCCACTACGACAACATGCTGTTCGCCCAGATCGACGCCGTGTACTCCGCCCTGAGTTCCCTCGGTTTCAAGAAGCTCCCGGTCCACATCTCCGAGACCGGGTGGCCGTCGAAGGGGGACGAGGACGAGGCCGGAGCGACGCCGGAGAACGCGAAGAAGTACAACGGAAATCTGATCAAGCTCATTTGCCAGAAGAAGGGCACGCCGCTCAGGCCCGGGTCGGATCTCAACATCTACGTGTTCGCCCTGTTCAATGAGAACATGAAACCCGGCCCGAGTTCAGAGAGGAACTTCGGGCTGTTTAAACCCGACGGGTCGCCCGCGTACTCGATCGGGCTCTCGACGGGCAACATTTCCTTTGGTAACTCTAATTCGAATTCGAGTTCGGGTTCGGGTTCGAGTTCGGGCCAGGGACAGGTAAATCCGATTAGTAATGGTTGGTCGCCGTCGGGTTCTTCCGGCACGCCATACTTGTCCATTTCCTCCGCCCCCGCCACGGAGAGATTCCATGTGATTGGTTGGATTGCGATGATGTGGCTGCTGGCCTCGTTGTTGATGAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007154 GO:0008150 GO:0008422 GO:0009505 GO:0009987 GO:0015926 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0042973 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

426

Amino Acids

45.38

Weight (kDa)

7.68

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013309)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32860
fragaria_vesca	FvH4_5g10600 FvH4_5g10600 FvH4_5g10600
malus_domestica	MD06G1122000.v1.1 MD14G1138400.v1.1
prunus_persica	Prupe.5G132700_v2.0.a1 Prupe.5G132700_v2.0.a1
pyrus_communis	pycom06g11310 pycom14g11350
rosa_chinensis	RchiOBHm_Chr7g0187541
rosa_laevigata	RLG00000004772
rosa_multiflora	Rmu_sc0008640.1_g000003 Rmu_ssc0000110.1_g000023
rosa_roxburghii	Rroxscaffold_3G00267340
rosa_rugosa	Rorug06G0482600.1
rosa_samantha	Rh7CG087900 Rh7DG089500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	359
AasI	GACNNNNNNGTC	1 cut(s)	467
AatII	GACGTC	1 cut(s)	147
Acc36I	ACCTGC	1 cut(s)	359
AccBSI	CCGCTC	2 cut(s)	658, 919
AccII	CGCG	2 cut(s)	863, 1034
AclWI	GGATC	5 cut(s)	194, 562, 601, 692, 942
AcoI	YGGCCR	2 cut(s)	109, 815
AcsI	RAATTY	2 cut(s)	88, 1087
AcyI	GRCGYC	4 cut(s)	144, 234, 747, 851
AfaI	GTAC	4 cut(s)	665, 755, 872, 1037
AflIII	ACRYGT	2 cut(s)	390, 948
AgsI	TTSAA	5 cut(s)	48, 93, 385, 781, 964
AjiI	CACGTC	1 cut(s)	393
AjnI	CCWGG	5 cut(s)	279, 291, 302, 321, 1119
AloI	GAACNNNNNNTCC	2 cut(s)	674, 706
AluBI	AGCT	5 cut(s)	18, 187, 787, 892, 1275
AluI	AGCT	5 cut(s)	18, 187, 787, 892, 1275
Alw26I	GTCTC	1 cut(s)	800
AlwI	GGATC	5 cut(s)	194, 562, 601, 692, 942
Ama87I	CYCGRG	3 cut(s)	659, 926, 985
ApeKI	GCWGC	3 cut(s)	5, 555, 1249
ApoI	RAATTY	2 cut(s)	88, 1087
AspLEI	GCGC	1 cut(s)	533
AsuC2I	CCSGG	7 cut(s)	287, 416, 791, 811, 927, 928, 981
AsuHPI	GGTGA	5 cut(s)	169, 340, 370, 463, 469
AsuII	TTCGAA	1 cut(s)	1085
AvaI	CYCGRG	3 cut(s)	659, 926, 985
AvaII	GGWCC	4 cut(s)	277, 283, 373, 793
BaeGI	GKGCMC	1 cut(s)	914
BanII	GRGCYC	1 cut(s)	1050
BarI	GAAGNNNNNNTAC	2 cut(s)	656, 688
BbvI	GCAGC	3 cut(s)	17, 542, 1236
BccI	CCATC	1 cut(s)	336
BceAI	ACGGC	6 cut(s)	124, 505, 583, 734, 802, 1141
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 343, 377
BciT130I	CCWGG	5 cut(s)	281, 293, 304, 323, 1121
BciVI	GTATCC	1 cut(s)	525
BclI	TGATCA	2 cut(s)	606, 885
BcnI	CCSGG	7 cut(s)	287, 416, 791, 811, 927, 928, 981
BcoDI	GTCTC	1 cut(s)	800
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	525
BglI	GCCNNNNNGGC	1 cut(s)	922
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	5 cut(s)	6, 556, 656, 917, 1250
BlsI	GCNGC	5 cut(s)	7, 557, 657, 918, 1251
Bme18I	GGWCC	4 cut(s)	277, 283, 373, 793
BmeT110I	CYCGRG	3 cut(s)	659, 926, 985
BmgBI	CACGTC	1 cut(s)	393
BmiI	GGNNCC	2 cut(s)	285, 691
BmsI	GCATC	4 cut(s)	180, 184, 363, 567
BpmI	CTGGAG	1 cut(s)	488
Bpu10I	CCTNAGC	2 cut(s)	645, 920
Bpu14I	TTCGAA	1 cut(s)	1085
BpuMI	CCSGG	7 cut(s)	287, 416, 791, 811, 927, 928, 981
BsaAI	YACGTR	1 cut(s)	949
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	4 cut(s)	144, 234, 747, 851
BsaI	GGTCTC	1 cut(s)	800
BsaJI	CCNNGG	7 cut(s)	273, 291, 303, 772, 926, 1120, 1206
BsaWI	WCCGGW	1 cut(s)	590
BsaXI	ACNNNNNCTCC	4 cut(s)	479, 509, 674, 704
Bse118I	RCCGGY	3 cut(s)	230, 527, 551
Bse3DI	GCAATG	1 cut(s)	426
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	5 cut(s)	281, 293, 304, 323, 1121
BseDI	CCNNGG	7 cut(s)	273, 291, 303, 772, 926, 1120, 1206
BseJI	GATNNNNATC	1 cut(s)	198
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	2 cut(s)	755, 934
BseRI	GAGGAG	2 cut(s)	19, 401
BseSI	GKGCMC	1 cut(s)	914
BseXI	GCAGC	3 cut(s)	17, 542, 1236
Bsh1236I	CGCG	2 cut(s)	863, 1034
Bsh1285I	CGRYCG	1 cut(s)	1044
BsiEI	CGRYCG	1 cut(s)	1044
BsiHKCI	CYCGRG	3 cut(s)	659, 926, 985
BslFI	GGGAC	2 cut(s)	842, 1137
BsmAI	GTCTC	1 cut(s)	800
BsmFI	GGGAC	2 cut(s)	842, 1137
Bso31I	GGTCTC	1 cut(s)	800
BsoBI	CYCGRG	3 cut(s)	659, 926, 985
Bsp119I	TTCGAA	1 cut(s)	1085
Bsp1286I	GDGCHC	2 cut(s)	914, 1050
BspCNI	CTCAG	2 cut(s)	756, 933
BspFNI	CGCG	2 cut(s)	863, 1034
BspLI	GGNNCC	2 cut(s)	285, 691
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	5 cut(s)	194, 562, 601, 692, 942
BspT104I	TTCGAA	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	800
BsrBI	CCGCTC	2 cut(s)	658, 919
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	3 cut(s)	230, 527, 551
BssAI	RCCGGY	3 cut(s)	230, 527, 551
BssECI	CCNNGG	7 cut(s)	273, 291, 303, 772, 926, 1120, 1206
BssNI	GRCGYC	4 cut(s)	144, 234, 747, 851
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	5 cut(s)	281, 293, 304, 323, 1121
Bst4CI	ACNGT	2 cut(s)	85, 475
Bst6I	CTCTTC	1 cut(s)	677
BstACI	GRCGYC	4 cut(s)	144, 234, 747, 851
BstBAI	YACGTR	1 cut(s)	949
BstBI	TTCGAA	1 cut(s)	1085
BstC8I	GCNNGC	5 cut(s)	529, 914, 1032, 1175, 1254
BstDEI	CTNAG	3 cut(s)	645, 764, 920
BstDSI	CCRYGG	1 cut(s)	1206
BstENI	CCTNNNNNAGG	1 cut(s)	272
BstFNI	CGCG	2 cut(s)	863, 1034
BstH2I	RGCGCY	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	533
BstMAI	GTCTC	1 cut(s)	800
BstMCI	CGRYCG	1 cut(s)	1044
BstMWI	GCNNNNNNNGC	3 cut(s)	537, 655, 922
BstNI	CCWGG	5 cut(s)	281, 293, 304, 323, 1121
BstNSI	RCATGY	1 cut(s)	730
BstSLI	GKGCMC	1 cut(s)	914
BstUI	CGCG	2 cut(s)	863, 1034
BstV1I	GCAGC	3 cut(s)	17, 542, 1236
BstX2I	RGATCY	2 cut(s)	544, 934
BstXI	CCANNNNNNTGG	1 cut(s)	1226
BstYI	RGATCY	2 cut(s)	544, 934
BsuI	GTATCC	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	1206
BtgZI	GCGATG	1 cut(s)	1253
BtrI	CACGTC	1 cut(s)	393
BveI	ACCTGC	1 cut(s)	359
Cac8I	GCNNGC	5 cut(s)	529, 914, 1032, 1175, 1254
CfoI	GCGC	1 cut(s)	533
Cfr10I	RCCGGY	3 cut(s)	230, 527, 551
Cfr9I	CCCGGG	1 cut(s)	926
CseI	GACGC	4 cut(s)	223, 418, 755, 859
Csp6I	GTAC	4 cut(s)	664, 754, 871, 1036
CviAII	CATG	4 cut(s)	70, 727, 973, 1220
CviQI	GTAC	4 cut(s)	664, 754, 871, 1036
DdeI	CTNAG	3 cut(s)	645, 764, 920
DraI	TTTAAA	1 cut(s)	1015
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
EaeI	YGGCCR	2 cut(s)	109, 815
Eam1104I	CTCTTC	1 cut(s)	677
EarI	CTCTTC	1 cut(s)	677
EciI	GGCGGA	5 cut(s)	507, 514, 527, 748, 1186
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	1 cut(s)	1050
Eco31I	GGTCTC	1 cut(s)	800
Eco47I	GGWCC	4 cut(s)	277, 283, 373, 793
Eco88I	CYCGRG	3 cut(s)	659, 926, 985
EcoNI	CCTNNNNNAGG	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	283, 373
EcoRI	GAATTC	1 cut(s)	1087
EcoRII	CCWGG	5 cut(s)	279, 291, 302, 321, 1119
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	1050
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	4 cut(s)	73, 730, 976, 1223
FaiI	YATR	6 cut(s)	71, 245, 728, 974, 1180, 1221
FaqI	GGGAC	2 cut(s)	842, 1137
FatI	CATG	4 cut(s)	69, 726, 972, 1219
FauI	CCCGC	3 cut(s)	343, 1039, 1210
FbaI	TGATCA	2 cut(s)	606, 885
Fnu4HI	GCNGC	5 cut(s)	6, 556, 656, 917, 1250
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	5 cut(s)	6, 556, 656, 917, 1250
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	532
GluI	GCNGC	5 cut(s)	6, 556, 656, 917, 1250
GsuI	CTGGAG	1 cut(s)	488
HaeII	RGCGCY	1 cut(s)	534
HgaI	GACGC	4 cut(s)	223, 418, 755, 859
HhaI	GCGC	1 cut(s)	533
Hin1I	GRCGYC	4 cut(s)	144, 234, 747, 851
Hin1II	CATG	4 cut(s)	73, 730, 976, 1223
Hin6I	GCGC	1 cut(s)	531
HinP1I	GCGC	1 cut(s)	531
HinfI	GANTC	1 cut(s)	1215
HphI	GGTGA	5 cut(s)	169, 340, 370, 463, 469
Hpy166II	GTNNAC	3 cut(s)	433, 754, 796
Hpy188I	TCNGA	7 cut(s)	549, 567, 805, 885, 934, 994, 1137
Hpy188III	TCNNGA	5 cut(s)	137, 505, 604, 781, 1051
Hpy8I	GTNNAC	3 cut(s)	433, 754, 796
HpyAV	CCTTC	5 cut(s)	141, 229, 391, 817, 901
HpyCH4III	ACNGT	2 cut(s)	85, 475
HpyCH4IV	ACGT	4 cut(s)	144, 392, 666, 948
HpyCH4V	TGCA	4 cut(s)	35, 354, 424, 558
HpyF10VI	GCNNNNNNNGC	3 cut(s)	537, 655, 922
HpyF3I	CTNAG	3 cut(s)	645, 764, 920
HpySE526I	ACGT	4 cut(s)	144, 392, 666, 948
Hsp92I	GRCGYC	4 cut(s)	144, 234, 747, 851
Hsp92II	CATG	4 cut(s)	73, 730, 976, 1223
HspAI	GCGC	1 cut(s)	531
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	606, 885
LmnI	GCTCC	3 cut(s)	695, 792, 845
Lsp1109I	GCAGC	3 cut(s)	17, 542, 1236
LweI	GCATC	4 cut(s)	180, 184, 363, 567
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	4 cut(s)	144, 392, 666, 948
MaeIII	GTNAC	3 cut(s)	469, 475, 1073
MbiI	CCGCTC	2 cut(s)	658, 919
MboII	GAAGA	5 cut(s)	349, 664, 877, 916, 1158
MflI	RGATCY	2 cut(s)	544, 934
MhlI	GDGCHC	2 cut(s)	914, 1050
MluCI	AATT	6 cut(s)	36, 48, 88, 574, 1081, 1087
MmeI	TCCRAC	2 cut(s)	912, 1211
MreI	CGCCGGCG	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	1 cut(s)	1014
MslI	CAYNNNNRTG	1 cut(s)	947
MspA1I	CMGCKG	1 cut(s)	154
MssI	GTTTAAAC	1 cut(s)	1015
MvaI	CCWGG	5 cut(s)	281, 293, 304, 323, 1121
MvnI	CGCG	2 cut(s)	863, 1034
MwoI	GCNNNNNNNGC	3 cut(s)	537, 655, 922
NaeI	GCCGGC	1 cut(s)	529
NciI	CCSGG	7 cut(s)	287, 416, 791, 811, 927, 928, 981
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	73, 730, 976, 1223
NlaIV	GGNNCC	2 cut(s)	285, 691
NmeAIII	GCCGAG	1 cut(s)	566
NmuCI	GTSAC	2 cut(s)	469, 475
NspI	RCATGY	1 cut(s)	730
NspV	TTCGAA	1 cut(s)	1085
PaeR7I	CTCGAG	1 cut(s)	659
PaqCI	CACCTGC	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	3 cut(s)	366, 518, 741
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	1 cut(s)	1215
PflFI	GACNNNGTC	1 cut(s)	143
PfoI	TCCNGGA	1 cut(s)	279
PkrI	GCNGC	5 cut(s)	7, 557, 657, 918, 1251
Ple19I	CGATCG	1 cut(s)	1044
PmeI	GTTTAAAC	1 cut(s)	1015
Ppu21I	YACGTR	1 cut(s)	949
PpuMI	RGGWCCY	2 cut(s)	283, 373
Psp5II	RGGWCCY	2 cut(s)	283, 373
Psp6I	CCWGG	5 cut(s)	279, 291, 302, 321, 1119
PspGI	CCWGG	5 cut(s)	279, 291, 302, 321, 1119
PspN4I	GGNNCC	2 cut(s)	285, 691
PspPPI	RGGWCCY	2 cut(s)	283, 373
PspXI	VCTCGAGB	1 cut(s)	659
PsuI	RGATCY	2 cut(s)	544, 934
PsyI	GACNNNGTC	1 cut(s)	143
PvuI	CGATCG	1 cut(s)	1044
RsaI	GTAC	4 cut(s)	665, 755, 872, 1037
RsaNI	GTAC	4 cut(s)	664, 754, 871, 1036
RseI	CAYNNNNRTG	1 cut(s)	947
SaqAI	TTAA	1 cut(s)	1014
SatI	GCNGC	5 cut(s)	6, 556, 656, 917, 1250
SduI	GDGCHC	2 cut(s)	914, 1050
SfaNI	GCATC	4 cut(s)	180, 184, 363, 567
Sfr274I	CTCGAG	1 cut(s)	659
SfuI	TTCGAA	1 cut(s)	1085
SgrAI	CRCCGGYG	2 cut(s)	230, 527
SinI	GGWCC	4 cut(s)	277, 283, 373, 793
SlaI	CTCGAG	1 cut(s)	659
SmaI	CCCGGG	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	947
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
Sse9I	AATT	6 cut(s)	36, 48, 88, 574, 1081, 1087
SspMI	CTAG	1 cut(s)	15
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	2 cut(s)	85, 475
TaiI	ACGT	4 cut(s)	147, 395, 669, 951
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	6 cut(s)	36, 48, 88, 574, 1081, 1087
TatI	WGTACW	2 cut(s)	753, 870
TauI	GCSGC	2 cut(s)	658, 919
TfiI	GAWTC	1 cut(s)	1215
Tru1I	TTAA	1 cut(s)	1014
Tru9I	TTAA	1 cut(s)	1014
TseFI	GTSAC	2 cut(s)	469, 475
TseI	GCWGC	3 cut(s)	5, 555, 1249
Tsp45I	GTSAC	2 cut(s)	469, 475
TspDTI	ATGAA	3 cut(s)	58, 232, 989
TspGWI	ACGGA	2 cut(s)	891, 1223
TspMI	CCCGGG	1 cut(s)	926
Tth111I	GACNNNGTC	1 cut(s)	143
VpaK11BI	GGWCC	4 cut(s)	277, 283, 373, 793
XagI	CCTNNNNNAGG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	88, 1087
XceI	RCATGY	1 cut(s)	730
XhoI	CTCGAG	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	926
XspI	CTAG	1 cut(s)	15
ZraI	GACGTC	1 cut(s)	145

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.