RLG00000004772

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0013309
Physical Location & Seq
Forward (+)
62148377 .. 62150160
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004772

Sequence Viewer

Length: 1263 bp
ATGGAGCTTTCTAGCTTCTGTTCTTCAATGTTCTCACTCGTTCTGCTAATTTCAGTGTTTATGTACGCTGGAGTGGTGAATTCAATCGGAATTAACTACGGCCAAATCGCAAACAACTTACCTTCGCCGGACGCGGTGGTGCCGTTAGCCAAATCCATCGGAATTACCAGGATCAAGCTCTACGACGCCGATCCCAAAGTGCTCAAGGCATTCGCCAACAGCGGAGTGGAGTTCACAGTGTGCGTGGGGAATGAGTACCTCGCCAAGATCCAAGACCCGGCCAAGGCCCAGGAGTGGGTCAAGTCCAACGTCCAGGCTTTCATGCCGGCCACCAAGATCACCTGCATCTTCGTCGGAAACGAAGTCCTCACCTTCAACGACACGACGATGACCGGCAACCTCCTCCCGGCGATGCAGAGCGTCCACACCGCCCTCGTCACTCTGGGCCTGGACAAGCAGGTCGCCGTCACCACGGCACATTCCCTCTCCATTCTCGAAACCTCTTTCCCGCCGTCGGCCGGAGCATTCCGCCGGGATCTGAAAAACTGCATATCTCCGATCCTCGATTTCCACGCCAAAACCGGATCTCCGTTCTTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCCAAACAAGTGCCGCTGGACTACGTCCTCTTCCAGCCCAACGCCGGTTCGCTGGATCCGGCCACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCGTCTACGCCGCCCTGGCATCCCTCGGCTACAAGAAGCTTCCGGTACACATCTCCGAGACCGGGTGGCCGTCCAAAGGCGACGAGGACGAGGCCGGAGCCACGCTGGAGAATGCGAAGAAGTACAATGGGAATCTGATCAAGCTCATTTGCCAGAACAAAGGCACACCGTTGAGGCCGAGCTCGGATCTGAACATCTACGTCTTCGCTCTGTTCAACGAGAACATGAAACCCGGCCCGAGCTCCGAGAGGAACTTCGGGCTTTTGAAACCCGACGGAACTCCGGCGTACTCGCTTGGATTCGCGTTGAACAGTAGCTCAAGTGGTAACGGTAACGGTAACACTAACAGCTCCTCCGGGTCGGGTCAGGGTGGGATTAACCCGATTACTATTGGATCGTCGCCGCCCGGTTCTTCCAGTAACGGCTACTTGTCCATTTCATCCGCCCCCGCCACTGAGAGGTACCATTTGATCGGATCGATTCCCATGTTGTGGTTGGTTCTGTTGTTGATAAAAGTCCTTTGA

Protein Analysis

421

Amino Acids

44.88

Weight (kDa)

6.99

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 5.1e-87 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
AasI GACNNNNNNGTC 1 cut(s) 458
Acc36I ACCTGC 2 cut(s) 350, 448
Acc65I GGTACC 1 cut(s) 1200
AccB1I GGYRCC 2 cut(s) 139, 1200
AccB7I CCANNNNNTGG 1 cut(s) 1230
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 134, 1043
AcoI YGGCCR 6 cut(s) 100, 279, 327, 516, 693, 806
AcsI RAATTY 1 cut(s) 79
AcyI GRCGYC 2 cut(s) 186, 738
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 6 cut(s) 65, 257, 786, 863, 1028, 1202
AgsI TTSAA 6 cut(s) 27, 84, 376, 955, 1006, 1048
AjnI CCWGG 5 cut(s) 167, 288, 312, 447, 753
AluBI AGCT 9 cut(s) 7, 15, 178, 778, 883, 921, 981, 1056, 1089
AluI AGCT 9 cut(s) 7, 15, 178, 778, 883, 921, 981, 1056, 1089
Alw21I GWGCWC 3 cut(s) 204, 923, 983
Alw26I GTCTC 1 cut(s) 791
Ama87I CYCGRG 1 cut(s) 976
ApoI RAATTY 1 cut(s) 79
Asp718I GGTACC 1 cut(s) 1200
AspS9I GGNCC 3 cut(s) 286, 445, 974
AsuC2I CCSGG 7 cut(s) 278, 407, 533, 802, 972, 1096, 1146
AsuHPI GGTGA 4 cut(s) 88, 331, 361, 460
AvaI CYCGRG 1 cut(s) 976
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 139, 1200
BanII GRGCYC 2 cut(s) 923, 983
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 3 cut(s) 204, 923, 983
BccI CCATC 1 cut(s) 164
BceAI ACGGC 8 cut(s) 115, 127, 449, 489, 496, 725, 793, 1177
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 5 cut(s) 169, 290, 314, 449, 755
BclI TGATCA 2 cut(s) 597, 876
BcnI CCSGG 7 cut(s) 278, 407, 533, 802, 972, 1096, 1146
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 2 cut(s) 350, 448
BglI GCCNNNNNGGC 1 cut(s) 755
BisI GCNGC 3 cut(s) 647, 750, 1142
BlsI GCNGC 3 cut(s) 648, 751, 1143
BmeT110I CYCGRG 1 cut(s) 976
BmgT120I GGNCC 3 cut(s) 286, 445, 974
BmiI GGNNCC 4 cut(s) 141, 690, 838, 1202
BmsI GCATC 3 cut(s) 354, 402, 767
BpiI GAAGAC 1 cut(s) 934
BpmI CTGGAG 2 cut(s) 90, 866
BpuEI CTTGAG 2 cut(s) 188, 1042
BpuMI CCSGG 7 cut(s) 278, 407, 533, 802, 972, 1096, 1146
Bsa29I ATCGAT 1 cut(s) 1217
BsaHI GRCGYC 2 cut(s) 186, 738
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 5 cut(s) 282, 288, 471, 753, 763
BsaWI WCCGGW 2 cut(s) 581, 781
BsaXI ACNNNNNCTCC 4 cut(s) 571, 601, 1076, 1106
Bse118I RCCGGY 3 cut(s) 325, 392, 677
Bse1I ACTGG 1 cut(s) 1155
BseBI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BseCI ATCGAT 1 cut(s) 1217
BseDI CCNNGG 5 cut(s) 282, 288, 471, 753, 763
BseGI GGATG 2 cut(s) 758, 1178
BseMII CTCAG 1 cut(s) 1185
BseNI ACTGG 1 cut(s) 1155
BseRI GAGGAG 2 cut(s) 392, 1081
BseX3I CGGCCG 1 cut(s) 516
Bsh1236I CGCG 2 cut(s) 134, 1043
Bsh1285I CGRYCG 1 cut(s) 519
BshNI GGYRCC 2 cut(s) 139, 1200
BshVI ATCGAT 1 cut(s) 1217
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 3 cut(s) 204, 923, 983
BsiHKCI CYCGRG 1 cut(s) 976
BsmAI GTCTC 1 cut(s) 791
BsmI GAATGC 3 cut(s) 209, 524, 856
Bso31I GGTCTC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 976
Bsp1286I GDGCHC 3 cut(s) 204, 923, 983
BspCNI CTCAG 1 cut(s) 1186
BspDI ATCGAT 1 cut(s) 1217
BspFNI CGCG 2 cut(s) 134, 1043
BspLI GGNNCC 4 cut(s) 141, 690, 838, 1202
BspMI ACCTGC 2 cut(s) 350, 448
BspQI GCTCTTC 1 cut(s) 728
BspT107I GGYRCC 2 cut(s) 139, 1200
BspTNI GGTCTC 1 cut(s) 791
BsrFI RCCGGY 3 cut(s) 325, 392, 677
BsrI ACTGG 1 cut(s) 1155
BssAI RCCGGY 3 cut(s) 325, 392, 677
BssECI CCNNGG 5 cut(s) 282, 288, 471, 753, 763
BssNI GRCGYC 2 cut(s) 186, 738
BssT1I CCWWGG 1 cut(s) 282
Bst2UI CCWGG 5 cut(s) 169, 290, 314, 449, 755
Bst4CI ACNGT 5 cut(s) 238, 909, 1052, 1070, 1076
Bst6I CTCTTC 2 cut(s) 668, 728
BstACI GRCGYC 2 cut(s) 186, 738
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 1 cut(s) 1194
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 758, 1178
BstFNI CGCG 2 cut(s) 134, 1043
BstMAI GTCTC 1 cut(s) 791
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 2 cut(s) 746, 755
BstNI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BstNSI RCATGY 1 cut(s) 721
BstUI CGCG 2 cut(s) 134, 1043
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstYI RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstZI CGGCCG 1 cut(s) 516
Bsu15I ATCGAT 1 cut(s) 1217
BsuTUI ATCGAT 1 cut(s) 1217
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 758, 1178
BtsIMutI CAGTG 3 cut(s) 60, 243, 1191
BveI ACCTGC 2 cut(s) 350, 448
Cac8I GCNNGC 1 cut(s) 327
Cfr10I RCCGGY 3 cut(s) 325, 392, 677
Cfr13I GGNCC 3 cut(s) 286, 445, 974
ClaI ATCGAT 1 cut(s) 1217
CseI GACGC 4 cut(s) 140, 194, 409, 746
Csp6I GTAC 6 cut(s) 64, 256, 785, 862, 1027, 1201
CviAII CATG 4 cut(s) 322, 718, 964, 1225
CviQI GTAC 6 cut(s) 64, 256, 785, 862, 1027, 1201
DdeI CTNAG 1 cut(s) 1194
DraIII CACNNNGTG 1 cut(s) 240
DrdI GACNNNNNNGTC 1 cut(s) 458
DseDI GACNNNNNNGTC 1 cut(s) 458
EaeI YGGCCR 6 cut(s) 100, 279, 327, 516, 693, 806
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 2 cut(s) 668, 728
EarI CTCTTC 2 cut(s) 668, 728
EciI GGCGGA 2 cut(s) 518, 1171
Ecl136II GAGCTC 2 cut(s) 921, 981
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 282
Eco24I GRGCYC 2 cut(s) 923, 983
Eco31I GGTCTC 1 cut(s) 791
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 2 cut(s) 921, 981
Eco88I CYCGRG 1 cut(s) 976
EcoICRI GAGCTC 2 cut(s) 921, 981
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 5 cut(s) 167, 288, 312, 447, 753
EcoT14I CCWWGG 1 cut(s) 282
EcoT38I GRGCYC 2 cut(s) 923, 983
ErhI CCWWGG 1 cut(s) 282
FaeI CATG 4 cut(s) 325, 721, 967, 1228
FaiI YATR 6 cut(s) 62, 323, 551, 719, 965, 1226
FatI CATG 4 cut(s) 321, 717, 963, 1224
FauI CCCGC 2 cut(s) 516, 1195
FbaI TGATCA 2 cut(s) 597, 876
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 3 cut(s) 647, 750, 1142
FokI GGATG 2 cut(s) 745, 1165
FriOI GRGCYC 2 cut(s) 923, 983
Fsp4HI GCNGC 3 cut(s) 647, 750, 1142
FspBI CTAG 1 cut(s) 12
GluI GCNGC 3 cut(s) 647, 750, 1142
GsuI CTGGAG 2 cut(s) 90, 866
HgaI GACGC 4 cut(s) 140, 194, 409, 746
Hin1I GRCGYC 2 cut(s) 186, 738
Hin1II CATG 4 cut(s) 325, 721, 967, 1228
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 3 cut(s) 871, 1038, 1219
HphI GGTGA 4 cut(s) 88, 331, 361, 460
Hpy166II GTNNAC 4 cut(s) 234, 424, 745, 787
Hpy188III TCNNGA 2 cut(s) 494, 595
Hpy8I GTNNAC 4 cut(s) 234, 424, 745, 787
Hpy99I CGWCG 8 cut(s) 188, 356, 388, 517, 740, 824, 1016, 1141
HpyAV CCTTC 2 cut(s) 132, 382
HpyCH4III ACNGT 5 cut(s) 238, 909, 1052, 1070, 1076
HpyCH4IV ACGT 3 cut(s) 309, 657, 939
HpyCH4V TGCA 3 cut(s) 345, 415, 549
HpyF10VI GCNNNNNNNGC 2 cut(s) 746, 755
HpyF3I CTNAG 1 cut(s) 1194
HpySE526I ACGT 3 cut(s) 309, 657, 939
Hsp92I GRCGYC 2 cut(s) 186, 738
Hsp92II CATG 4 cut(s) 325, 721, 967, 1228
KpnI GGTACC 1 cut(s) 1204
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Ksp22I TGATCA 2 cut(s) 597, 876
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 5 cut(s) 4, 521, 836, 986, 1094
LweI GCATC 3 cut(s) 354, 402, 767
MaeI CTAG 1 cut(s) 12
MaeII ACGT 3 cut(s) 309, 657, 939
MaeIII GTNAC 6 cut(s) 436, 466, 1064, 1070, 1076, 1157
MboII GAAGA 7 cut(s) 15, 340, 655, 715, 868, 934, 1143
MflI RGATCY 5 cut(s) 267, 535, 584, 688, 925
MhlI GDGCHC 3 cut(s) 204, 923, 983
MluCI AATT 4 cut(s) 48, 79, 90, 162
MmeI TCCRAC 2 cut(s) 330, 334
MroNI GCCGGC 1 cut(s) 325
MseI TTAA 2 cut(s) 93, 1116
MslI CAYNNNNRTG 1 cut(s) 386
MspA1I CMGCKG 2 cut(s) 222, 649
Mva1269I GAATGC 3 cut(s) 209, 524, 856
MvaI CCWGG 5 cut(s) 169, 290, 314, 449, 755
MvnI CGCG 2 cut(s) 134, 1043
MwoI GCNNNNNNNGC 2 cut(s) 746, 755
NaeI GCCGGC 1 cut(s) 327
NciI CCSGG 7 cut(s) 278, 407, 533, 802, 972, 1096, 1146
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 4 cut(s) 325, 721, 967, 1228
NlaIV GGNNCC 4 cut(s) 141, 690, 838, 1202
NmeAIII GCCGAG 2 cut(s) 744, 942
NmuCI GTSAC 2 cut(s) 436, 466
NspI RCATGY 1 cut(s) 721
PaqCI CACCTGC 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 2 cut(s) 357, 732
PctI GAATGC 3 cut(s) 209, 524, 856
PdiI GCCGGC 1 cut(s) 327
PfeI GAWTC 3 cut(s) 871, 1038, 1219
PflFI GACNNNGTC 2 cut(s) 656, 740
PflMI CCANNNNNTGG 1 cut(s) 1230
PkrI GCNGC 3 cut(s) 648, 751, 1143
Psp124BI GAGCTC 2 cut(s) 923, 983
Psp6I CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspGI CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspN4I GGNNCC 4 cut(s) 141, 690, 838, 1202
PspPI GGNCC 3 cut(s) 286, 445, 974
PsuI RGATCY 5 cut(s) 267, 535, 584, 688, 925
PsyI GACNNNGTC 2 cut(s) 656, 740
RsaI GTAC 6 cut(s) 65, 257, 786, 863, 1028, 1202
RsaNI GTAC 6 cut(s) 64, 256, 785, 862, 1027, 1201
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 2 cut(s) 923, 983
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 2 cut(s) 93, 1116
SatI GCNGC 3 cut(s) 647, 750, 1142
Sau96I GGNCC 3 cut(s) 286, 445, 974
SduI GDGCHC 3 cut(s) 204, 923, 983
SfaNI GCATC 3 cut(s) 354, 402, 767
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 2 cut(s) 203, 1057
SmoI CTYRAG 2 cut(s) 203, 1057
Sse9I AATT 4 cut(s) 48, 79, 90, 162
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 2 cut(s) 923, 983
StyI CCWWGG 1 cut(s) 282
TaaI ACNGT 5 cut(s) 238, 909, 1052, 1070, 1076
TaiI ACGT 3 cut(s) 312, 660, 942
TaqI TCGA 5 cut(s) 495, 564, 629, 735, 1217
TasI AATT 4 cut(s) 48, 79, 90, 162
TatI WGTACW 1 cut(s) 861
TauI GCSGC 3 cut(s) 649, 752, 1144
TfiI GAWTC 3 cut(s) 871, 1038, 1219
Tru1I TTAA 2 cut(s) 93, 1116
Tru9I TTAA 2 cut(s) 93, 1116
TscAI CASTG 3 cut(s) 60, 243, 1198
TseFI GTSAC 2 cut(s) 436, 466
Tsp45I GTSAC 2 cut(s) 436, 466
TspDTI ATGAA 3 cut(s) 310, 980, 1167
TspGWI ACGGA 2 cut(s) 579, 1029
TspRI CASTG 3 cut(s) 60, 243, 1198
Tth111I GACNNNGTC 2 cut(s) 656, 740
Van91I CCANNNNNTGG 1 cut(s) 1230
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 721
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 1231
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.