Rh7DG089500

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0013309
Physical Location & Seq
Reverse (-)
7517101 .. 7521414
4314 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG089500.1

Sequence Viewer

Length: 1311 bp
ATGGAGCCTTCTAGCTTCTGTTCTTCAATGTTCTCACTCGTTCTGCTAATTTCAGGGTTTATGTACGCTGGGGTGGTGAATTCAATCGGAATTAACTACGGCCAAATCGCAAACAACTTACCTTCGCCGGACGCGGTGGTGCCGTTGGCCAAGTCCATCGGAATCACCAGGATCAAGCTGTACGACGCCGATCCCAAGGTGCTGAAGGCGTTCGCCAACAGCGGAGTCGAGTTCACAGTGTGCGTGGGGAATGAGTACCTCGCCAAGATCCAAGACCCGGGCAAGGCCCAGGAGTGGGTCAAGTCCAACGTCCAGGCTTTCATGCCGGCCACCAAGATCACCTGCATCTTCGTCGGAAACGAAGTCCTCACCTTCAACGACACGACCATGACCGGCAACCTCTTCCCGGCGATGCAGAGCATCCACACCGCCCTCGTCACTCTGGGCCTGGACAAGCAGGTCGCCGTCACCACCGCCCATTCCCTCTCCATTCTCGAAACCTCGTTCCCGCCGTCGGCCGGAGCATTCCGCCGGGATCTGAAAAACTGCATATCTCCGATCCTCGATTTCCACGCCAAAACCGGATCTCCGTTCCTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCTAAACAAGTGCCGCTGGACTACGTCCTCTTCCAGCCCAACGCCGGTTCGCTGGATCCGGCCACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCGTCTACGCCGCCCTGGCATCCCTCGGCTACAAGAAGCTTCCGGTACACATCTCCGAGACCGGGTGGCCGTCCAAAGGCGACGAGGACGAGGCCGGAGCCACGCCGGAGAATGCGAAGAAGTACAATGGGAATCTGATCAAGCTCATTTGCCAGAAAAAGGGCACGCCGTTGAGGCCGAGCTCGGATCTGAACATTTACGTCTTCGCTCTGTTCAACGAGAACATGAAACCCGGCCCGAGCTCCGAGAGGAACTTCGGGCTTTTGAAACCCGACGGAACTCCGGCGTACTCGCTTGGATTCGCGTTGAACAGTAGCTCAAGCGGTAACGGTAACAGTAACAGCTCATCCGGGTCGGGTCAGGGCGGGATTAACCCGATTACTATTGGATCGTCGCCACCCGGTTCTTCCAGTAACGGCTACTTGTCCATTTCATCCGCCCCCGCCACTGTGAGTTCTACTTCACTTTTTTTACTGATCATTTTCACATTTGTACTTATTACTTTTACGTGGCTGAGTTTAAGAGGACCCAAATGTCACTCGATTATGGGTCGTTCGAATCATAATAAGTGA

Protein Analysis

436

Amino Acids

46.62

Weight (kDa)

8.57

Isoelectric Point (pI)

37.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 3e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 350
AasI GACNNNNNNGTC 2 cut(s) 458, 1272
Acc36I ACCTGC 2 cut(s) 350, 448
AccB1I GGYRCC 1 cut(s) 139
AccI GTMKAC 1 cut(s) 744
AccII CGCG 2 cut(s) 134, 1043
AcoI YGGCCR 6 cut(s) 100, 147, 327, 516, 693, 806
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 186, 738
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 7 cut(s) 65, 182, 257, 786, 863, 1028, 1233
AgsI TTSAA 6 cut(s) 27, 84, 376, 955, 1006, 1048
AjnI CCWGG 5 cut(s) 167, 288, 312, 447, 753
AluBI AGCT 8 cut(s) 15, 178, 778, 883, 921, 981, 1056, 1083
AluI AGCT 8 cut(s) 15, 178, 778, 883, 921, 981, 1056, 1083
Alw21I GWGCWC 2 cut(s) 923, 983
Alw26I GTCTC 1 cut(s) 791
Ama87I CYCGRG 2 cut(s) 277, 976
ApoI RAATTY 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 4 cut(s) 286, 445, 974, 1265
AsuC2I CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
AsuHPI GGTGA 5 cut(s) 88, 157, 331, 361, 460
AsuII TTCGAA 1 cut(s) 1295
AvaI CYCGRG 2 cut(s) 277, 976
AvaII GGWCC 1 cut(s) 1265
BaeGI GKGCMC 1 cut(s) 905
BalI TGGCCA 1 cut(s) 149
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 2 cut(s) 923, 983
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 2 cut(s) 923, 983
BccI CCATC 1 cut(s) 164
BceAI ACGGC 8 cut(s) 115, 127, 449, 496, 725, 793, 892, 1171
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 5 cut(s) 169, 290, 314, 449, 755
BclI TGATCA 3 cut(s) 597, 876, 1215
BcnI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
BcoDI GTCTC 1 cut(s) 791
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 2 cut(s) 350, 448
BglI GCCNNNNNGGC 2 cut(s) 755, 913
BisI GCNGC 2 cut(s) 647, 750
BlsI GCNGC 2 cut(s) 648, 751
Bme18I GGWCC 1 cut(s) 1265
BmeT110I CYCGRG 2 cut(s) 277, 976
BmgT120I GGNCC 4 cut(s) 286, 445, 974, 1265
BmiI GGNNCC 5 cut(s) 6, 141, 690, 838, 1267
BmsI GCATC 4 cut(s) 354, 402, 429, 767
BpiI GAAGAC 1 cut(s) 934
Bpu14I TTCGAA 1 cut(s) 1295
BpuEI CTTGAG 1 cut(s) 1042
BpuMI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
BsaAI YACGTR 1 cut(s) 1248
BsaHI GRCGYC 2 cut(s) 186, 738
BsaI GGTCTC 1 cut(s) 791
BsaJI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BsaWI WCCGGW 2 cut(s) 581, 781
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bse118I RCCGGY 3 cut(s) 325, 392, 677
Bse1I ACTGG 1 cut(s) 1149
BseBI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BseDI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BseGI GGATG 4 cut(s) 420, 758, 1085, 1172
BseMII CTCAG 1 cut(s) 1244
BseNI ACTGG 1 cut(s) 1149
BseSI GKGCMC 1 cut(s) 905
BseX3I CGGCCG 1 cut(s) 516
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 2 cut(s) 134, 1043
Bsh1285I CGRYCG 1 cut(s) 519
BshNI GGYRCC 1 cut(s) 139
BsiEI CGRYCG 1 cut(s) 519
BsiHKAI GWGCWC 2 cut(s) 923, 983
BsiHKCI CYCGRG 2 cut(s) 277, 976
BsmAI GTCTC 1 cut(s) 791
BsmI GAATGC 2 cut(s) 524, 856
Bso31I GGTCTC 1 cut(s) 791
BsoBI CYCGRG 2 cut(s) 277, 976
Bsp119I TTCGAA 1 cut(s) 1295
Bsp1286I GDGCHC 3 cut(s) 905, 923, 983
BspCNI CTCAG 1 cut(s) 1245
BspFNI CGCG 2 cut(s) 134, 1043
BspLI GGNNCC 5 cut(s) 6, 141, 690, 838, 1267
BspMI ACCTGC 2 cut(s) 350, 448
BspQI GCTCTTC 1 cut(s) 728
BspT104I TTCGAA 1 cut(s) 1295
BspT107I GGYRCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 791
BsrFI RCCGGY 3 cut(s) 325, 392, 677
BsrI ACTGG 1 cut(s) 1149
BssAI RCCGGY 3 cut(s) 325, 392, 677
BssECI CCNNGG 5 cut(s) 195, 277, 288, 753, 763
BssNI GRCGYC 2 cut(s) 186, 738
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 5 cut(s) 169, 290, 314, 449, 755
Bst4CI ACNGT 5 cut(s) 238, 1052, 1070, 1076, 1189
Bst6I CTCTTC 3 cut(s) 407, 668, 728
BstACI GRCGYC 2 cut(s) 186, 738
BstBAI YACGTR 1 cut(s) 1248
BstBI TTCGAA 1 cut(s) 1295
BstC8I GCNNGC 2 cut(s) 327, 905
BstDEI CTNAG 1 cut(s) 1253
BstF5I GGATG 4 cut(s) 420, 758, 1085, 1172
BstFNI CGCG 2 cut(s) 134, 1043
BstMAI GTCTC 1 cut(s) 791
BstMCI CGRYCG 1 cut(s) 519
BstMWI GCNNNNNNNGC 3 cut(s) 746, 755, 913
BstNI CCWGG 5 cut(s) 169, 290, 314, 449, 755
BstNSI RCATGY 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 905
BstUI CGCG 2 cut(s) 134, 1043
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstYI RGATCY 5 cut(s) 267, 535, 584, 688, 925
BstZI CGGCCG 1 cut(s) 516
BtgZI GCGATG 1 cut(s) 425
BtsCI GGATG 4 cut(s) 420, 758, 1085, 1172
BtsIMutI CAGTG 2 cut(s) 243, 1185
BveI ACCTGC 2 cut(s) 350, 448
Cac8I GCNNGC 2 cut(s) 327, 905
Cfr10I RCCGGY 3 cut(s) 325, 392, 677
Cfr13I GGNCC 4 cut(s) 286, 445, 974, 1265
Cfr9I CCCGGG 1 cut(s) 277
CseI GACGC 3 cut(s) 140, 194, 746
Csp6I GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1232
CviAII CATG 4 cut(s) 322, 388, 718, 964
CviQI GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1232
DdeI CTNAG 1 cut(s) 1253
DraIII CACNNNGTG 1 cut(s) 240
DrdI GACNNNNNNGTC 2 cut(s) 458, 1272
DseDI GACNNNNNNGTC 2 cut(s) 458, 1272
EaeI YGGCCR 6 cut(s) 100, 147, 327, 516, 693, 806
EagI CGGCCG 1 cut(s) 516
Eam1104I CTCTTC 3 cut(s) 407, 668, 728
EarI CTCTTC 3 cut(s) 407, 668, 728
EciI GGCGGA 2 cut(s) 518, 1165
Ecl136II GAGCTC 2 cut(s) 921, 981
EclXI CGGCCG 1 cut(s) 516
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 923, 983
Eco31I GGTCTC 1 cut(s) 791
Eco47I GGWCC 1 cut(s) 1265
Eco52I CGGCCG 1 cut(s) 516
Eco53kI GAGCTC 2 cut(s) 921, 981
Eco57I CTGAAG 1 cut(s) 224
Eco88I CYCGRG 2 cut(s) 277, 976
EcoICRI GAGCTC 2 cut(s) 921, 981
EcoO109I RGGNCCY 1 cut(s) 1265
EcoRI GAATTC 1 cut(s) 79
EcoRII CCWGG 5 cut(s) 167, 288, 312, 447, 753
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 923, 983
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 4 cut(s) 325, 391, 721, 967
FaiI YATR 8 cut(s) 62, 323, 389, 551, 719, 965, 1286, 1302
FatI CATG 4 cut(s) 321, 387, 717, 963
FauI CCCGC 3 cut(s) 516, 1097, 1189
FbaI TGATCA 3 cut(s) 597, 876, 1215
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 2 cut(s) 647, 750
FokI GGATG 4 cut(s) 407, 745, 1072, 1159
FriOI GRGCYC 2 cut(s) 923, 983
Fsp4HI GCNGC 2 cut(s) 647, 750
FspBI CTAG 1 cut(s) 12
GluI GCNGC 2 cut(s) 647, 750
GsaI CCCAGC 1 cut(s) 72
HgaI GACGC 3 cut(s) 140, 194, 746
Hin1I GRCGYC 2 cut(s) 186, 738
Hin1II CATG 4 cut(s) 325, 391, 721, 967
HindIII AAGCTT 1 cut(s) 776
HinfI GANTC 5 cut(s) 162, 225, 871, 1038, 1297
HphI GGTGA 5 cut(s) 88, 157, 331, 361, 460
Hpy166II GTNNAC 3 cut(s) 234, 745, 787
Hpy188III TCNNGA 2 cut(s) 494, 595
Hpy8I GTNNAC 3 cut(s) 234, 745, 787
Hpy99I CGWCG 7 cut(s) 188, 356, 517, 740, 824, 1016, 1135
HpyAV CCTTC 4 cut(s) 18, 132, 199, 382
HpyCH4III ACNGT 5 cut(s) 238, 1052, 1070, 1076, 1189
HpyCH4IV ACGT 4 cut(s) 309, 657, 939, 1247
HpyCH4V TGCA 3 cut(s) 345, 415, 549
HpyF10VI GCNNNNNNNGC 3 cut(s) 746, 755, 913
HpyF3I CTNAG 1 cut(s) 1253
HpySE526I ACGT 4 cut(s) 309, 657, 939, 1247
Hsp92I GRCGYC 2 cut(s) 186, 738
Hsp92II CATG 4 cut(s) 325, 391, 721, 967
KroI GCCGGC 1 cut(s) 325
KroNI GCCGGC 1 cut(s) 327
Ksp22I TGATCA 3 cut(s) 597, 876, 1215
LguI GCTCTTC 1 cut(s) 728
LmnI GCTCC 4 cut(s) 4, 521, 836, 986
LweI GCATC 4 cut(s) 354, 402, 429, 767
MaeI CTAG 1 cut(s) 12
MaeII ACGT 4 cut(s) 309, 657, 939, 1247
MaeIII GTNAC 7 cut(s) 436, 466, 1064, 1070, 1076, 1151, 1274
MboII GAAGA 8 cut(s) 15, 340, 394, 655, 715, 868, 934, 1137
MflI RGATCY 5 cut(s) 267, 535, 584, 688, 925
MhlI GDGCHC 3 cut(s) 905, 923, 983
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 3 cut(s) 48, 79, 90
MluNI TGGCCA 1 cut(s) 149
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 330, 334
Mox20I TGGCCA 1 cut(s) 149
MroNI GCCGGC 1 cut(s) 325
MroXI GAANNNNTTC 1 cut(s) 209
MscI TGGCCA 1 cut(s) 149
MseI TTAA 3 cut(s) 93, 1110, 1259
MslI CAYNNNNRTG 1 cut(s) 386
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 2 cut(s) 222, 649
Mva1269I GAATGC 2 cut(s) 524, 856
MvaI CCWGG 5 cut(s) 169, 290, 314, 449, 755
MvnI CGCG 2 cut(s) 134, 1043
MwoI GCNNNNNNNGC 3 cut(s) 746, 755, 913
NaeI GCCGGC 1 cut(s) 327
NciI CCSGG 8 cut(s) 278, 279, 407, 533, 802, 972, 1090, 1140
NgoMIV GCCGGC 1 cut(s) 325
NlaIII CATG 4 cut(s) 325, 391, 721, 967
NlaIV GGNNCC 5 cut(s) 6, 141, 690, 838, 1267
NmeAIII GCCGAG 2 cut(s) 744, 942
NmuCI GTSAC 3 cut(s) 436, 466, 1274
NspI RCATGY 1 cut(s) 721
NspV TTCGAA 1 cut(s) 1295
PaqCI CACCTGC 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 728
PcsI WCGNNNNNNNCGW 3 cut(s) 357, 509, 732
PctI GAATGC 2 cut(s) 524, 856
PdiI GCCGGC 1 cut(s) 327
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 4 cut(s) 162, 871, 1038, 1297
PflFI GACNNNGTC 2 cut(s) 656, 740
PkrI GCNGC 2 cut(s) 648, 751
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
Ppu21I YACGTR 1 cut(s) 1248
PpuMI RGGWCCY 1 cut(s) 1265
Psp124BI GAGCTC 2 cut(s) 923, 983
Psp5II RGGWCCY 1 cut(s) 1265
Psp6I CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 5 cut(s) 167, 288, 312, 447, 753
PspN4I GGNNCC 5 cut(s) 6, 141, 690, 838, 1267
PspPI GGNCC 4 cut(s) 286, 445, 974, 1265
PspPPI RGGWCCY 1 cut(s) 1265
PsuI RGATCY 5 cut(s) 267, 535, 584, 688, 925
PsyI GACNNNGTC 2 cut(s) 656, 740
RsaI GTAC 7 cut(s) 65, 182, 257, 786, 863, 1028, 1233
RsaNI GTAC 7 cut(s) 64, 181, 256, 785, 862, 1027, 1232
RseI CAYNNNNRTG 1 cut(s) 386
SacI GAGCTC 2 cut(s) 923, 983
SapI GCTCTTC 1 cut(s) 728
SaqAI TTAA 3 cut(s) 93, 1110, 1259
SatI GCNGC 2 cut(s) 647, 750
Sau96I GGNCC 4 cut(s) 286, 445, 974, 1265
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 3 cut(s) 905, 923, 983
SfaNI GCATC 4 cut(s) 354, 402, 429, 767
SfuI TTCGAA 1 cut(s) 1295
SinI GGWCC 1 cut(s) 1265
SmaI CCCGGG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 1057
SmoI CTYRAG 1 cut(s) 1057
Sse9I AATT 3 cut(s) 48, 79, 90
SspMI CTAG 1 cut(s) 12
SstI GAGCTC 2 cut(s) 923, 983
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 5 cut(s) 238, 1052, 1070, 1076, 1189
TaiI ACGT 4 cut(s) 312, 660, 942, 1250
TaqI TCGA 7 cut(s) 228, 495, 564, 629, 735, 1280, 1295
TasI AATT 3 cut(s) 48, 79, 90
TatI WGTACW 2 cut(s) 861, 1231
TauI GCSGC 2 cut(s) 649, 752
TfiI GAWTC 4 cut(s) 162, 871, 1038, 1297
Tru1I TTAA 3 cut(s) 93, 1110, 1259
Tru9I TTAA 3 cut(s) 93, 1110, 1259
TscAI CASTG 2 cut(s) 243, 1192
TseFI GTSAC 3 cut(s) 436, 466, 1274
Tsp45I GTSAC 3 cut(s) 436, 466, 1274
TspDTI ATGAA 3 cut(s) 310, 980, 1161
TspGWI ACGGA 2 cut(s) 579, 1029
TspMI CCCGGG 1 cut(s) 277
TspRI CASTG 2 cut(s) 243, 1192
Tth111I GACNNNGTC 2 cut(s) 656, 740
VpaK11BI GGWCC 1 cut(s) 1265
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 721
XmaI CCCGGG 1 cut(s) 277
XmiI GTMKAC 1 cut(s) 744
XmnI GAANNNNTTC 1 cut(s) 209
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.