Rh7CG087900

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0013309
Physical Location & Seq
Reverse (-)
6638491 .. 6641616
3126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG087900.1

Sequence Viewer

Length: 1203 bp
ATGTACGCTGGAGTGGTGAATGCAATCGGAATTAACTACGGCCAAATCGCAAACAACTTACCTTCGCCGGACGCGGTGGTGCCGTTGGCCAAATCCATCGGAATCACCAGGATCAAGCTCTACGACGCCGATCCCAAGGTGCTGAAGGCGTTCGCCAACAGCGGAGTCGAGTTCACAGTGTGCGTGGGGAATGAGTACCTCGCCAAGATCCAAGACCCGGGCAAGGCCCAGGAGTGGGTCAAGTCCAACGTCCAGGCTTTCATGCCGGCCACCAAGATCACCTGCATCTTCGTCGGAAACGAAGTCCTCACCTTCAACGACACGACCATGACCGGCAACCTCCTCCCGGCGATGCAGAGCATCCACACCGCCCTCGTCACTCTGGGCCTGGACAAGCAGGTCGCCGTCACTACCGCCCATTCCCTCTCCATTCTCGAAACCTCGTTCCCGCCGTCGGCCGGAGCATTCCGCCGGGATCTGAAAAACTGCATATCTCCGATCCTCGATTTCCACGCCAAAACCGGATCTCCGTTCCTGATCAACGCCTACCCTTACTTCGCCTACAAATCGAACCCTAAACAAGTGCCGCTGGACTACGTCCTCTTCCAGCCCAACGCCGGTTCGCTGGATCCTTCCACCAATCTCCACTACGACAACATGCTCTTCGCCCAAATCGACGCCGTCTACGCCGCCCTGGCATCCCTCGGCTACAAGAAGCTTCCGGTACACATCTCCGAGACCGGGTGGCCGTCCAAAGGCGACGAGGACGAGGCCGGAGCCACGCCGGAGAATGCGAAGAAGTACAATGGGAATCTGATCAAGCTCATTTGCCAGAAAAAGGGCACGCCGCTGAGGCCGAGCTCGGATCTGAACATTTACGTCTTCGCTCTGTTCAACGAGAACATGAAACCCGGCCCGAGCTCCGAGAGGAACTTCGGGCTTTTGAAACCCGACGGAACTCCGGCGTACTCGCTTGGATTCGCGTTGAACAGTAGCTCAAGCGGTAACGGTAACGGTAACAGTAACAGCTCCTCCGGGTCGGGTCAGGGTGGGATTAACCCGATTACTATTGGATCGTCGCCACCCGGTTCTTCCAGTAACGGCTACTTGTCCATTTCATCCGCCCCCGCCACTGAGAGGTACCATTTGATCGGATCGATTCCCATGATGTGGTTGGTCCTGTTGTTGGTAAAAGTCCTTTGA

Protein Analysis

400

Amino Acids

42.65

Weight (kDa)

8.17

Isoelectric Point (pI)

33.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 9 - 327 1.3e-86 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 290
AasI GACNNNNNNGTC 1 cut(s) 398
Acc36I ACCTGC 2 cut(s) 290, 388
Acc65I GGTACC 1 cut(s) 1140
AccB1I GGYRCC 2 cut(s) 79, 1140
AccB7I CCANNNNNTGG 1 cut(s) 1170
AccI GTMKAC 1 cut(s) 684
AccII CGCG 2 cut(s) 74, 983
AcoI YGGCCR 5 cut(s) 40, 87, 267, 456, 746
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 2 cut(s) 126, 678
AdeI CACNNNGTG 1 cut(s) 180
AfaI GTAC 6 cut(s) 5, 197, 726, 803, 968, 1142
AgsI TTSAA 4 cut(s) 316, 895, 946, 988
AjnI CCWGG 5 cut(s) 107, 228, 252, 387, 693
AluBI AGCT 7 cut(s) 118, 718, 823, 861, 921, 996, 1029
AluI AGCT 7 cut(s) 118, 718, 823, 861, 921, 996, 1029
Alw21I GWGCWC 2 cut(s) 863, 923
Alw26I GTCTC 1 cut(s) 731
Ama87I CYCGRG 2 cut(s) 217, 916
Asp700I GAANNNNTTC 1 cut(s) 149
Asp718I GGTACC 1 cut(s) 1140
AspS9I GGNCC 4 cut(s) 226, 385, 914, 1177
AsuC2I CCSGG 8 cut(s) 218, 219, 347, 473, 742, 912, 1036, 1086
AsuHPI GGTGA 4 cut(s) 28, 97, 271, 301
AvaI CYCGRG 2 cut(s) 217, 916
AvaII GGWCC 1 cut(s) 1177
BaeGI GKGCMC 1 cut(s) 845
BalI TGGCCA 1 cut(s) 89
BamHI GGATCC 1 cut(s) 628
BanI GGYRCC 2 cut(s) 79, 1140
BanII GRGCYC 2 cut(s) 863, 923
BbsI GAAGAC 1 cut(s) 874
Bbv12I GWGCWC 2 cut(s) 863, 923
BbvCI CCTCAGC 1 cut(s) 851
BccI CCATC 1 cut(s) 104
BceAI ACGGC 7 cut(s) 55, 67, 389, 436, 665, 733, 1117
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 5 cut(s) 109, 230, 254, 389, 695
BclI TGATCA 2 cut(s) 537, 816
BcnI CCSGG 8 cut(s) 218, 219, 347, 473, 742, 912, 1036, 1086
BcoDI GTCTC 1 cut(s) 731
BfuAI ACCTGC 2 cut(s) 290, 388
BglI GCCNNNNNGGC 2 cut(s) 695, 853
BisI GCNGC 3 cut(s) 587, 690, 848
BlsI GCNGC 3 cut(s) 588, 691, 849
Bme18I GGWCC 1 cut(s) 1177
BmeT110I CYCGRG 2 cut(s) 217, 916
BmgT120I GGNCC 4 cut(s) 226, 385, 914, 1177
BmiI GGNNCC 4 cut(s) 81, 630, 778, 1142
BmsI GCATC 4 cut(s) 294, 342, 369, 707
BpiI GAAGAC 1 cut(s) 874
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 851
BpuEI CTTGAG 1 cut(s) 982
BpuMI CCSGG 8 cut(s) 218, 219, 347, 473, 742, 912, 1036, 1086
Bsa29I ATCGAT 1 cut(s) 1157
BsaHI GRCGYC 2 cut(s) 126, 678
BsaI GGTCTC 1 cut(s) 731
BsaJI CCNNGG 5 cut(s) 135, 217, 228, 693, 703
BsaWI WCCGGW 2 cut(s) 521, 721
BsaXI ACNNNNNCTCC 4 cut(s) 511, 541, 1016, 1046
Bse118I RCCGGY 3 cut(s) 265, 332, 617
Bse1I ACTGG 1 cut(s) 1095
BseBI CCWGG 5 cut(s) 109, 230, 254, 389, 695
BseCI ATCGAT 1 cut(s) 1157
BseDI CCNNGG 5 cut(s) 135, 217, 228, 693, 703
BseGI GGATG 3 cut(s) 360, 698, 1118
BseMII CTCAG 2 cut(s) 842, 1125
BseNI ACTGG 1 cut(s) 1095
BseRI GAGGAG 2 cut(s) 332, 1021
BseSI GKGCMC 1 cut(s) 845
BseX3I CGGCCG 1 cut(s) 456
Bsh1236I CGCG 2 cut(s) 74, 983
Bsh1285I CGRYCG 1 cut(s) 459
BshNI GGYRCC 2 cut(s) 79, 1140
BshVI ATCGAT 1 cut(s) 1157
BsiEI CGRYCG 1 cut(s) 459
BsiHKAI GWGCWC 2 cut(s) 863, 923
BsiHKCI CYCGRG 2 cut(s) 217, 916
BsmAI GTCTC 1 cut(s) 731
BsmI GAATGC 3 cut(s) 25, 464, 796
Bso31I GGTCTC 1 cut(s) 731
BsoBI CYCGRG 2 cut(s) 217, 916
Bsp1286I GDGCHC 3 cut(s) 845, 863, 923
BspCNI CTCAG 2 cut(s) 843, 1126
BspDI ATCGAT 1 cut(s) 1157
BspFNI CGCG 2 cut(s) 74, 983
BspLI GGNNCC 4 cut(s) 81, 630, 778, 1142
BspMI ACCTGC 2 cut(s) 290, 388
BspQI GCTCTTC 1 cut(s) 668
BspT107I GGYRCC 2 cut(s) 79, 1140
BspTNI GGTCTC 1 cut(s) 731
BsrFI RCCGGY 3 cut(s) 265, 332, 617
BsrI ACTGG 1 cut(s) 1095
BssAI RCCGGY 3 cut(s) 265, 332, 617
BssECI CCNNGG 5 cut(s) 135, 217, 228, 693, 703
BssNI GRCGYC 2 cut(s) 126, 678
BssT1I CCWWGG 1 cut(s) 135
Bst2UI CCWGG 5 cut(s) 109, 230, 254, 389, 695
Bst4CI ACNGT 5 cut(s) 178, 992, 1010, 1016, 1022
Bst6I CTCTTC 2 cut(s) 608, 668
BstACI GRCGYC 2 cut(s) 126, 678
BstC8I GCNNGC 2 cut(s) 267, 845
BstDEI CTNAG 2 cut(s) 851, 1134
BstF5I GGATG 3 cut(s) 360, 698, 1118
BstFNI CGCG 2 cut(s) 74, 983
BstMAI GTCTC 1 cut(s) 731
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 3 cut(s) 686, 695, 853
BstNI CCWGG 5 cut(s) 109, 230, 254, 389, 695
BstNSI RCATGY 1 cut(s) 661
BstSLI GKGCMC 1 cut(s) 845
BstUI CGCG 2 cut(s) 74, 983
BstV2I GAAGAC 1 cut(s) 874
BstX2I RGATCY 5 cut(s) 207, 475, 524, 628, 865
BstYI RGATCY 5 cut(s) 207, 475, 524, 628, 865
BstZI CGGCCG 1 cut(s) 456
Bsu15I ATCGAT 1 cut(s) 1157
BsuTUI ATCGAT 1 cut(s) 1157
BtgZI GCGATG 1 cut(s) 365
BtsCI GGATG 3 cut(s) 360, 698, 1118
BtsIMutI CAGTG 2 cut(s) 183, 1131
BveI ACCTGC 2 cut(s) 290, 388
Cac8I GCNNGC 2 cut(s) 267, 845
Cfr10I RCCGGY 3 cut(s) 265, 332, 617
Cfr13I GGNCC 4 cut(s) 226, 385, 914, 1177
Cfr9I CCCGGG 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 1157
CseI GACGC 3 cut(s) 80, 134, 686
Csp6I GTAC 6 cut(s) 4, 196, 725, 802, 967, 1141
CviAII CATG 5 cut(s) 262, 328, 658, 904, 1165
CviQI GTAC 6 cut(s) 4, 196, 725, 802, 967, 1141
DdeI CTNAG 2 cut(s) 851, 1134
DraIII CACNNNGTG 1 cut(s) 180
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 5 cut(s) 40, 87, 267, 456, 746
EagI CGGCCG 1 cut(s) 456
Eam1104I CTCTTC 2 cut(s) 608, 668
EarI CTCTTC 2 cut(s) 608, 668
EciI GGCGGA 2 cut(s) 458, 1111
Ecl136II GAGCTC 2 cut(s) 861, 921
EclXI CGGCCG 1 cut(s) 456
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 2 cut(s) 863, 923
Eco31I GGTCTC 1 cut(s) 731
Eco47I GGWCC 1 cut(s) 1177
Eco52I CGGCCG 1 cut(s) 456
Eco53kI GAGCTC 2 cut(s) 861, 921
Eco57I CTGAAG 1 cut(s) 164
Eco88I CYCGRG 2 cut(s) 217, 916
EcoICRI GAGCTC 2 cut(s) 861, 921
EcoRII CCWGG 5 cut(s) 107, 228, 252, 387, 693
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 2 cut(s) 863, 923
ErhI CCWWGG 1 cut(s) 135
FaeI CATG 5 cut(s) 265, 331, 661, 907, 1168
FaiI YATR 6 cut(s) 263, 329, 491, 659, 905, 1166
FatI CATG 5 cut(s) 261, 327, 657, 903, 1164
FauI CCCGC 2 cut(s) 456, 1135
FbaI TGATCA 2 cut(s) 537, 816
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 3 cut(s) 587, 690, 848
FokI GGATG 3 cut(s) 347, 685, 1105
FriOI GRGCYC 2 cut(s) 863, 923
Fsp4HI GCNGC 3 cut(s) 587, 690, 848
GluI GCNGC 3 cut(s) 587, 690, 848
GsuI CTGGAG 1 cut(s) 30
HgaI GACGC 3 cut(s) 80, 134, 686
Hin1I GRCGYC 2 cut(s) 126, 678
Hin1II CATG 5 cut(s) 265, 331, 661, 907, 1168
HindIII AAGCTT 1 cut(s) 716
HinfI GANTC 5 cut(s) 102, 165, 811, 978, 1159
HphI GGTGA 4 cut(s) 28, 97, 271, 301
Hpy166II GTNNAC 3 cut(s) 174, 685, 727
Hpy188III TCNNGA 2 cut(s) 434, 535
Hpy8I GTNNAC 3 cut(s) 174, 685, 727
Hpy99I CGWCG 7 cut(s) 128, 296, 457, 680, 764, 956, 1081
HpyAV CCTTC 4 cut(s) 72, 139, 322, 642
HpyCH4III ACNGT 5 cut(s) 178, 992, 1010, 1016, 1022
HpyCH4IV ACGT 3 cut(s) 249, 597, 879
HpyCH4V TGCA 4 cut(s) 23, 285, 355, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 686, 695, 853
HpyF3I CTNAG 2 cut(s) 851, 1134
HpySE526I ACGT 3 cut(s) 249, 597, 879
Hsp92I GRCGYC 2 cut(s) 126, 678
Hsp92II CATG 5 cut(s) 265, 331, 661, 907, 1168
KpnI GGTACC 1 cut(s) 1144
KroI GCCGGC 1 cut(s) 265
KroNI GCCGGC 1 cut(s) 267
Ksp22I TGATCA 2 cut(s) 537, 816
LguI GCTCTTC 1 cut(s) 668
LmnI GCTCC 4 cut(s) 461, 776, 926, 1034
LweI GCATC 4 cut(s) 294, 342, 369, 707
MaeII ACGT 3 cut(s) 249, 597, 879
MaeIII GTNAC 7 cut(s) 376, 406, 1004, 1010, 1016, 1022, 1097
MboII GAAGA 6 cut(s) 280, 595, 655, 808, 874, 1083
MflI RGATCY 5 cut(s) 207, 475, 524, 628, 865
MhlI GDGCHC 3 cut(s) 845, 863, 923
MlsI TGGCCA 1 cut(s) 89
MluCI AATT 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 89
MlyI GAGTC 1 cut(s) 174
MmeI TCCRAC 2 cut(s) 270, 274
Mox20I TGGCCA 1 cut(s) 89
MroNI GCCGGC 1 cut(s) 265
MroXI GAANNNNTTC 1 cut(s) 149
MscI TGGCCA 1 cut(s) 89
MseI TTAA 2 cut(s) 33, 1056
MslI CAYNNNNRTG 1 cut(s) 326
Msp20I TGGCCA 1 cut(s) 89
MspA1I CMGCKG 3 cut(s) 162, 589, 850
Mva1269I GAATGC 3 cut(s) 25, 464, 796
MvaI CCWGG 5 cut(s) 109, 230, 254, 389, 695
MvnI CGCG 2 cut(s) 74, 983
MwoI GCNNNNNNNGC 3 cut(s) 686, 695, 853
NaeI GCCGGC 1 cut(s) 267
NciI CCSGG 8 cut(s) 218, 219, 347, 473, 742, 912, 1036, 1086
NgoMIV GCCGGC 1 cut(s) 265
NlaIII CATG 5 cut(s) 265, 331, 661, 907, 1168
NlaIV GGNNCC 4 cut(s) 81, 630, 778, 1142
NmeAIII GCCGAG 2 cut(s) 684, 882
NmuCI GTSAC 2 cut(s) 376, 406
NspI RCATGY 1 cut(s) 661
PaqCI CACCTGC 1 cut(s) 290
PciSI GCTCTTC 1 cut(s) 668
PcsI WCGNNNNNNNCGW 3 cut(s) 297, 449, 672
PctI GAATGC 3 cut(s) 25, 464, 796
PdiI GCCGGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 4 cut(s) 102, 811, 978, 1159
PflFI GACNNNGTC 2 cut(s) 596, 680
PflMI CCANNNNNTGG 1 cut(s) 1170
PkrI GCNGC 3 cut(s) 588, 691, 849
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
Psp124BI GAGCTC 2 cut(s) 863, 923
Psp6I CCWGG 5 cut(s) 107, 228, 252, 387, 693
PspGI CCWGG 5 cut(s) 107, 228, 252, 387, 693
PspN4I GGNNCC 4 cut(s) 81, 630, 778, 1142
PspPI GGNCC 4 cut(s) 226, 385, 914, 1177
PsuI RGATCY 5 cut(s) 207, 475, 524, 628, 865
PsyI GACNNNGTC 2 cut(s) 596, 680
RsaI GTAC 6 cut(s) 5, 197, 726, 803, 968, 1142
RsaNI GTAC 6 cut(s) 4, 196, 725, 802, 967, 1141
RseI CAYNNNNRTG 1 cut(s) 326
SacI GAGCTC 2 cut(s) 863, 923
SapI GCTCTTC 1 cut(s) 668
SaqAI TTAA 2 cut(s) 33, 1056
SatI GCNGC 3 cut(s) 587, 690, 848
Sau96I GGNCC 4 cut(s) 226, 385, 914, 1177
SchI GAGTC 1 cut(s) 174
SduI GDGCHC 3 cut(s) 845, 863, 923
SfaNI GCATC 4 cut(s) 294, 342, 369, 707
SinI GGWCC 1 cut(s) 1177
SmaI CCCGGG 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 326
SmlI CTYRAG 1 cut(s) 997
SmoI CTYRAG 1 cut(s) 997
Sse9I AATT 1 cut(s) 30
SstI GAGCTC 2 cut(s) 863, 923
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 5 cut(s) 178, 992, 1010, 1016, 1022
TaiI ACGT 3 cut(s) 252, 600, 882
TaqI TCGA 6 cut(s) 168, 435, 504, 569, 675, 1157
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 801
TauI GCSGC 3 cut(s) 589, 692, 850
TfiI GAWTC 4 cut(s) 102, 811, 978, 1159
Tru1I TTAA 2 cut(s) 33, 1056
Tru9I TTAA 2 cut(s) 33, 1056
TscAI CASTG 2 cut(s) 183, 1138
TseFI GTSAC 2 cut(s) 376, 406
Tsp45I GTSAC 2 cut(s) 376, 406
TspDTI ATGAA 3 cut(s) 250, 920, 1107
TspGWI ACGGA 2 cut(s) 519, 969
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 2 cut(s) 183, 1138
Tth111I GACNNNGTC 2 cut(s) 596, 680
Van91I CCANNNNNTGG 1 cut(s) 1170
VpaK11BI GGWCC 1 cut(s) 1177
XceI RCATGY 1 cut(s) 661
XcmI CCANNNNNNNNNTGG 1 cut(s) 1171
XmaI CCCGGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 684
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.