Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

12147188 .. 12148380

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G33475.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGGTTCAATCCAAAACACAGTTCACTACTGTTGTGTCTCAAGAGACAATCAGATTATGTACGCTTACAACAATGCCGGAGACCACCGCAACAACGAGAGTCTTGCAGCGTTATGCTTGGAAAAGACTCCACCTTTTCACAAGTGGTACTTCGAAACGAGGGGTAAGAAGACTTTTGGATTCTTGATGAAAGATGACTTCGTTTATTTCGCCATTGTTGATGATGTTTTCAAGAAATCTAGCGTTCTTGATTTTCTTGAAAAACTGAGAGATGAGTTAAAAGAAGCTAATAAGAAGAATTCTAGAGGAAGTTTCTCTGGTAGTATCAGTTTTAGCAATGTTCAAGACCAAATTGTCCGAAGACTCATAGCTTCATTAGAGTTTGATCACACTTGTCTTCCATTATCATCACCTTCCATTGATGGTGCTGAACAAAGCTACGCATCTAACTCCAAAGCTCCTCTTTTAGGAAGATCCAACAAGCAAGATAAGAAGAAAGGGAGAGATCATGCGCACTCACTAAGAGGTATTGAGATAGAGGAACACCGAAAATCAAATGATAGAGGAAACGTAACAGAATGTTCTAATGCTTCATCTGAATCAGCAACGTATGTTCCAAGAAGGGGACGATCTGGTGGCTCTCAGAGCATTGAGAGGAAGTGGCGGCGTCAAGTGAAGATTGTTCTTGCCATTGATATAGCTATTTGCTTAACGCTGCTTGGTGTTTGGTTGGCTATTTGTCATGGCATTGAGTGTACACGTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

28.77

Weight (kDa)

9.06

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	353
Acc16I	TGCGCA	1 cut(s)	513
AciI	CCGC	2 cut(s)	88, 664
AclWI	GGATC	1 cut(s)	468
AcsI	RAATTY	1 cut(s)	298
AcyI	GRCGYC	1 cut(s)	667
AfaI	GTAC	3 cut(s)	62, 149, 757
AfiI	CCNNNNNNNGG	2 cut(s)	467, 623
AflIII	ACRYGT	1 cut(s)	758
AgsI	TTSAA	4 cut(s)	9, 232, 260, 344
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	5 cut(s)	287, 371, 438, 458, 701
AluI	AGCT	5 cut(s)	287, 371, 438, 458, 701
Alw26I	GTCTC	3 cut(s)	39, 43, 75
AlwI	GGATC	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	107, 715
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	514
AsuHPI	GGTGA	1 cut(s)	402
AsuII	TTCGAA	1 cut(s)	153
BbsI	GAAGAC	3 cut(s)	176, 367, 389
BbvI	GCAGC	2 cut(s)	119, 702
BccI	CCATC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BclI	TGATCA	1 cut(s)	385
BcoDI	GTCTC	3 cut(s)	39, 43, 75
BfaI	CTAG	2 cut(s)	240, 303
BisI	GCNGC	3 cut(s)	108, 665, 716
BlsI	GCNGC	3 cut(s)	109, 666, 717
BmsI	GCATC	1 cut(s)	452
BpiI	GAAGAC	3 cut(s)	176, 367, 389
Bpu14I	TTCGAA	1 cut(s)	153
BpuEI	CTTGAG	1 cut(s)	25
BsaHI	GRCGYC	1 cut(s)	667
BsaI	GGTCTC	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 623
Bse3DI	GCAATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	467, 623
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	2 cut(s)	257, 656
BseRI	GAGGAG	1 cut(s)	450
BseXI	GCAGC	2 cut(s)	119, 702
BsiSI	CCGG	1 cut(s)	78
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	2 cut(s)	467, 623
BsmAI	GTCTC	3 cut(s)	39, 43, 75
BsmFI	GGGAC	1 cut(s)	639
Bso31I	GGTCTC	1 cut(s)	75
Bsp119I	TTCGAA	1 cut(s)	153
Bsp1407I	TGTACA	1 cut(s)	755
Bsp143I	GATC	4 cut(s)	385, 473, 505, 629
BspACI	CCGC	2 cut(s)	88, 664
BspCNI	CTCAG	2 cut(s)	258, 655
BspPI	GGATC	1 cut(s)	468
BspT104I	TTCGAA	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	75
BsrDI	GCAATG	1 cut(s)	343
BsrGI	TGTACA	1 cut(s)	755
BssMI	GATC	4 cut(s)	385, 473, 505, 629
BssNI	GRCGYC	1 cut(s)	667
Bst4CI	ACNGT	2 cut(s)	22, 32
BstACI	GRCGYC	1 cut(s)	667
BstAUI	TGTACA	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	266, 521, 642
BstENI	CCTNNNNNAGG	1 cut(s)	465
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	4 cut(s)	388, 476, 508, 632
BstMAI	GTCTC	3 cut(s)	39, 43, 75
BstMBI	GATC	4 cut(s)	385, 473, 505, 629
BstMWI	GCNNNNNNNGC	1 cut(s)	645
BstV1I	GCAGC	2 cut(s)	119, 702
BstV2I	GAAGAC	3 cut(s)	176, 367, 389
BstX2I	RGATCY	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	473
CfoI	GCGC	1 cut(s)	514
CseI	GACGC	1 cut(s)	656
Csp6I	GTAC	3 cut(s)	61, 148, 756
CviAII	CATG	2 cut(s)	509, 743
CviJI	RGCY	7 cut(s)	287, 371, 438, 458, 639, 701, 734
CviKI_1	RGCY	7 cut(s)	287, 371, 438, 458, 639, 701, 734
CviQI	GTAC	3 cut(s)	61, 148, 756
DdeI	CTNAG	3 cut(s)	266, 521, 642
DpnI	GATC	4 cut(s)	387, 475, 507, 631
DpnII	GATC	4 cut(s)	385, 473, 505, 629
DrdI	GACNNNNNNGTC	1 cut(s)	353
DseDI	GACNNNNNNGTC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	298
FaeI	CATG	2 cut(s)	512, 746
FaiI	YATR	7 cut(s)	59, 115, 368, 510, 612, 698, 744
FalI	AAGNNNNNCTT	4 cut(s)	134, 166, 447, 479
FaqI	GGGAC	1 cut(s)	639
FatI	CATG	2 cut(s)	508, 742
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	3 cut(s)	108, 665, 716
Fsp4HI	GCNGC	3 cut(s)	108, 665, 716
FspAI	RTGCGCAY	1 cut(s)	513
FspBI	CTAG	2 cut(s)	240, 303
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	108, 665, 716
HapII	CCGG	1 cut(s)	78
HgaI	GACGC	1 cut(s)	656
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	667
Hin1II	CATG	2 cut(s)	512, 746
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HinfI	GANTC	5 cut(s)	100, 127, 180, 363, 599
HpaII	CCGG	1 cut(s)	78
HphI	GGTGA	1 cut(s)	402
Hpy166II	GTNNAC	3 cut(s)	25, 756, 758
Hpy188I	TCNGA	4 cut(s)	54, 359, 598, 645
Hpy188III	TCNNGA	8 cut(s)	42, 184, 232, 248, 257, 303, 344, 765
Hpy8I	GTNNAC	3 cut(s)	25, 756, 758
HpyAV	CCTTC	2 cut(s)	423, 615
HpyCH4III	ACNGT	2 cut(s)	22, 32
HpyCH4IV	ACGT	3 cut(s)	570, 608, 760
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	645
HpyF3I	CTNAG	3 cut(s)	266, 521, 642
HpySE526I	ACGT	3 cut(s)	570, 608, 760
Hsp92I	GRCGYC	1 cut(s)	667
Hsp92II	CATG	2 cut(s)	512, 746
HspAI	GCGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	385, 473, 505, 629
LmnI	GCTCC	1 cut(s)	463
LpnPI	CCDG	3 cut(s)	91, 303, 618
Lsp1109I	GCAGC	2 cut(s)	119, 702
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	2 cut(s)	240, 303
MaeII	ACGT	3 cut(s)	570, 608, 760
MaeIII	GTNAC	1 cut(s)	571
MalI	GATC	4 cut(s)	387, 475, 507, 631
MboI	GATC	4 cut(s)	385, 473, 505, 629
MboII	GAAGA	7 cut(s)	181, 307, 372, 389, 483, 505, 688
MflI	RGATCY	1 cut(s)	473
MluCI	AATT	2 cut(s)	298, 351
MlyI	GAGTC	3 cut(s)	109, 121, 357
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	7 cut(s)	153, 299, 471, 518, 532, 557, 648
MseI	TTAA	2 cut(s)	278, 710
MspI	CCGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	1 cut(s)	645
NdeII	GATC	4 cut(s)	385, 473, 505, 629
NlaIII	CATG	2 cut(s)	512, 746
NsbI	TGCGCA	1 cut(s)	513
NspV	TTCGAA	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	180, 599
PkrI	GCNGC	3 cut(s)	109, 666, 717
PleI	GAGTC	3 cut(s)	108, 121, 357
PpsI	GAGTC	3 cut(s)	108, 121, 357
PsuI	RGATCY	1 cut(s)	473
RsaI	GTAC	3 cut(s)	62, 149, 757
RsaNI	GTAC	3 cut(s)	61, 148, 756
SaqAI	TTAA	2 cut(s)	278, 710
SatI	GCNGC	3 cut(s)	108, 665, 716
Sau3AI	GATC	4 cut(s)	385, 473, 505, 629
SchI	GAGTC	3 cut(s)	109, 121, 357
SfaNI	GCATC	1 cut(s)	452
SfuI	TTCGAA	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
Sse9I	AATT	2 cut(s)	298, 351
SsiI	CCGC	2 cut(s)	88, 664
SspMI	CTAG	2 cut(s)	240, 303
TaaI	ACNGT	2 cut(s)	22, 32
TaiI	ACGT	3 cut(s)	573, 611, 763
TaqI	TCGA	1 cut(s)	153
TasI	AATT	2 cut(s)	298, 351
TatI	WGTACW	1 cut(s)	755
TauI	GCSGC	1 cut(s)	667
TfiI	GAWTC	2 cut(s)	180, 599
Tru1I	TTAA	2 cut(s)	278, 710
Tru9I	TTAA	2 cut(s)	278, 710
TseI	GCWGC	2 cut(s)	107, 715
TspDTI	ATGAA	3 cut(s)	203, 363, 582
XagI	CCTNNNNNAGG	1 cut(s)	465
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	302
XspI	CTAG	2 cut(s)	240, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.