Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Forward (+)

68018743 .. 68019591

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGGCACAATGATGGATTCGATTCAAACTACCGTCTATTACTGTTGTGTATCAAAGGGTAACCGGATCCTCTATGCATATAGCGGTGGAGATGACGAAATTGAGAATTTGGCTACTTTGTGCTTGGAGAAGGCTCCTCCTTTCCATAAATGGTATATTGAAACCTCGGGTAAGAGGACTTATGGGTTTCTAATTGAAGATGGATATGTTTATTTGACTATTGTCGATGAGAGTCTTGGAACTCCTGGGGTTCTTCAGTTTCTAGATCATTTGAGGGACGAGTTCAAGAATATAGCCAAGAAGGGTTCAAGGGGAAGTTTGTCGAGTATGAACTCCGTTGGCATCCAAGAACAGTTAGTTCCTGTCATCAATCGATTGATAACCTCCTTAGAAAGTGTTTCTCAGGTTGGTAGTAATTGGACAGCTGAAACTCACCCATCGCTTCATGCTGGTCTTTCTCCATCACCAGGTACTGCAAACGGACAAATTGAAGTTGCCAGTTCTACAAAAGCACCTCTACTCGGGAAGTCTAATAAGCAAGAGAAGAAGAAGGCAAAAGATCATGTTATTGCGGTGAGAGACATTGAGTTGGAGGAACATAGGAGATCTGCTGACAGAGGAGTCAATCTAGATCCATTGACTTTGGATTCTAATAACCATGGTGTAGCAGGTTCTTCAGTTGCCTTACAAAAGGATTCAGGCTCAATGAGGATTAGATCAGGCTCTCAGAGCATTCGAAAGAAGTGGTGCCGCCAAGTGCGAATTATCCTTGCTATTGATGCGGCTGTTTGTGTAGCACTGCTTGTAATTTGGTTATTGATTTGTCATGGCATTGAGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

282

Amino Acids

30.91

Weight (kDa)

8.12

Isoelectric Point (pI)

50.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	620
Acc36I	ACCTGC	1 cut(s)	659
AccB1I	GGYRCC	1 cut(s)	747
AciI	CCGC	4 cut(s)	84, 572, 751, 782
AclWI	GGATC	3 cut(s)	61, 74, 626
AcsI	RAATTY	1 cut(s)	106
AcuI	CTGAAG	2 cut(s)	239, 660
AfaI	GTAC	1 cut(s)	472
AfiI	CCNNNNNNNGG	2 cut(s)	467, 521
AgsI	TTSAA	6 cut(s)	26, 161, 197, 286, 309, 491
AjnI	CCWGG	2 cut(s)	244, 466
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	1 cut(s)	573
AlwI	GGATC	3 cut(s)	61, 74, 626
AlwNI	CAGNNNCTG	1 cut(s)	473
Ama87I	CYCGRG	2 cut(s)	166, 521
ApoI	RAATTY	1 cut(s)	106
AsuHPI	GGTGA	3 cut(s)	425, 456, 586
AsuII	TTCGAA	1 cut(s)	736
AvaI	CYCGRG	2 cut(s)	166, 521
BaeGI	GKGCMC	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	66
BanI	GGYRCC	1 cut(s)	747
BccI	CCATC	4 cut(s)	7, 194, 445, 469
BciT130I	CCWGG	2 cut(s)	246, 468
BcoDI	GTCTC	1 cut(s)	573
BfaI	CTAG	2 cut(s)	263, 629
BfuAI	ACCTGC	1 cut(s)	659
BglII	AGATCT	1 cut(s)	605
BisI	GCNGC	2 cut(s)	751, 783
BlsI	GCNGC	2 cut(s)	752, 784
Bme1390I	CCNGG	2 cut(s)	246, 468
BmeT110I	CYCGRG	2 cut(s)	166, 521
BmiI	GGNNCC	3 cut(s)	68, 135, 749
BmrFI	CCNGG	2 cut(s)	246, 468
BmsI	GCATC	2 cut(s)	351, 769
BoxI	GACNNNNGTC	1 cut(s)	221
Bpu14I	TTCGAA	1 cut(s)	736
Bsa29I	ATCGAT	1 cut(s)	373
BsaJI	CCNNGG	3 cut(s)	165, 245, 658
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	467, 521
Bse1I	ACTGG	1 cut(s)	498
BseBI	CCWGG	2 cut(s)	246, 468
BseCI	ATCGAT	1 cut(s)	373
BseDI	CCNNGG	3 cut(s)	165, 245, 658
BseGI	GGATG	2 cut(s)	342, 840
BseLI	CCNNNNNNNGG	2 cut(s)	467, 521
BseMII	CTCAG	2 cut(s)	416, 740
BseNI	ACTGG	1 cut(s)	498
BseRI	GAGGAG	2 cut(s)	126, 633
BseSI	GKGCMC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	747
BshVI	ATCGAT	1 cut(s)	373
BsiHKCI	CYCGRG	2 cut(s)	166, 521
BsiSI	CCGG	1 cut(s)	64
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	2 cut(s)	467, 521
BsmAI	GTCTC	1 cut(s)	573
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	732
BsoBI	CYCGRG	2 cut(s)	166, 521
Bsp119I	TTCGAA	1 cut(s)	736
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
Bsp19I	CCATGG	1 cut(s)	658
BspACI	CCGC	4 cut(s)	84, 572, 751, 782
BspCNI	CTCAG	2 cut(s)	415, 739
BspDI	ATCGAT	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	68, 135, 749
BspMI	ACCTGC	1 cut(s)	659
BspPI	GGATC	3 cut(s)	61, 74, 626
BspT104I	TTCGAA	1 cut(s)	736
BspT107I	GGYRCC	1 cut(s)	747
BsrI	ACTGG	1 cut(s)	498
BssECI	CCNNGG	3 cut(s)	165, 245, 658
BssMI	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	2 cut(s)	246, 468
Bst4CI	ACNGT	3 cut(s)	34, 44, 354
BstAPI	GCANNNNNTGC	1 cut(s)	837
BstBI	TTCGAA	1 cut(s)	736
BstDEI	CTNAG	3 cut(s)	388, 402, 726
BstDSI	CCRYGG	1 cut(s)	658
BstEII	GGTNACC	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	342, 840
BstKTI	GATC	6 cut(s)	69, 268, 562, 608, 634, 719
BstMAI	GTCTC	1 cut(s)	573
BstMBI	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
BstMWI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
BstNI	CCWGG	2 cut(s)	246, 468
BstPAI	GACNNNNGTC	1 cut(s)	221
BstPI	GGTNACC	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	244, 466
BstSLI	GKGCMC	1 cut(s)	8
BstX2I	RGATCY	3 cut(s)	66, 605, 631
BstYI	RGATCY	3 cut(s)	66, 605, 631
Bsu15I	ATCGAT	1 cut(s)	373
BsuTUI	ATCGAT	1 cut(s)	373
BtgI	CCRYGG	1 cut(s)	658
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	342, 840
BtsI	GCAGTG	1 cut(s)	797
BtsIMutI	CAGTG	1 cut(s)	797
BveI	ACCTGC	1 cut(s)	659
CaiI	CAGNNNCTG	1 cut(s)	473
ClaI	ATCGAT	1 cut(s)	373
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	1 cut(s)	471
CviAII	CATG	4 cut(s)	446, 563, 659, 827
CviJI	RGCY	7 cut(s)	113, 134, 296, 425, 702, 723, 785
CviKI_1	RGCY	7 cut(s)	113, 134, 296, 425, 702, 723, 785
CviQI	GTAC	1 cut(s)	471
DdeI	CTNAG	3 cut(s)	388, 402, 726
DpnI	GATC	6 cut(s)	68, 267, 561, 607, 633, 718
DpnII	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
DrdI	GACNNNNNNGTC	1 cut(s)	620
DseDI	GACNNNNNNGTC	1 cut(s)	620
Eco130I	CCWWGG	1 cut(s)	658
Eco57I	CTGAAG	2 cut(s)	239, 660
Eco88I	CYCGRG	2 cut(s)	166, 521
Eco91I	GGTNACC	1 cut(s)	59
EcoO65I	GGTNACC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	244, 466
EcoT14I	CCWWGG	1 cut(s)	658
EcoT22I	ATGCAT	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	4 cut(s)	449, 566, 662, 830
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	4 cut(s)	445, 562, 658, 826
Fnu4HI	GCNGC	2 cut(s)	751, 783
FokI	GGATG	2 cut(s)	329, 827
Fsp4HI	GCNGC	2 cut(s)	751, 783
FspBI	CTAG	2 cut(s)	263, 629
GluI	GCNGC	2 cut(s)	751, 783
HapII	CCGG	1 cut(s)	64
Hin1II	CATG	4 cut(s)	449, 566, 662, 830
HinfI	GANTC	6 cut(s)	17, 22, 232, 621, 647, 695
HpaII	CCGG	1 cut(s)	64
HphI	GGTGA	3 cut(s)	425, 456, 586
Hpy188I	TCNGA	1 cut(s)	729
Hpy188III	TCNNGA	4 cut(s)	263, 286, 523, 629
HpyAV	CCTTC	3 cut(s)	124, 295, 544
HpyCH4III	ACNGT	3 cut(s)	34, 44, 354
HpyCH4V	TGCA	3 cut(s)	77, 476, 840
HpyF10VI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
HpyF3I	CTNAG	3 cut(s)	388, 402, 726
Hsp92II	CATG	4 cut(s)	449, 566, 662, 830
Kzo9I	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
LmnI	GCTCC	1 cut(s)	139
LweI	GCATC	2 cut(s)	351, 769
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	2 cut(s)	263, 629
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	6 cut(s)	68, 267, 561, 607, 633, 718
MboI	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
MboII	GAAGA	5 cut(s)	209, 245, 556, 559, 666
MflI	RGATCY	3 cut(s)	66, 605, 631
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	7 cut(s)	99, 106, 192, 415, 486, 762, 807
MlyI	GAGTC	2 cut(s)	241, 630
MmeI	TCCRAC	1 cut(s)	570
Mph1103I	ATGCAT	1 cut(s)	79
MslI	CAYNNNNRTG	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	1 cut(s)	64
MspR9I	CCNGG	2 cut(s)	246, 468
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	2 cut(s)	246, 468
MwoI	GCNNNNNNNGC	3 cut(s)	729, 779, 837
NcoI	CCATGG	1 cut(s)	658
NdeII	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
NlaIII	CATG	4 cut(s)	449, 566, 662, 830
NlaIV	GGNNCC	3 cut(s)	68, 135, 749
NsiI	ATGCAT	1 cut(s)	79
NspV	TTCGAA	1 cut(s)	736
PctI	GAATGC	1 cut(s)	732
PfeI	GAWTC	4 cut(s)	17, 22, 647, 695
PkrI	GCNGC	2 cut(s)	752, 784
PleI	GAGTC	2 cut(s)	240, 629
PpsI	GAGTC	2 cut(s)	240, 629
PshAI	GACNNNNGTC	1 cut(s)	221
Psp6I	CCWGG	2 cut(s)	244, 466
PspEI	GGTNACC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	244, 466
PspN4I	GGNNCC	3 cut(s)	68, 135, 749
PstNI	CAGNNNCTG	1 cut(s)	473
PsuI	RGATCY	3 cut(s)	66, 605, 631
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	1 cut(s)	472
RsaNI	GTAC	1 cut(s)	471
RseI	CAYNNNNRTG	1 cut(s)	11
SatI	GCNGC	2 cut(s)	751, 783
Sau3AI	GATC	6 cut(s)	66, 265, 559, 605, 631, 716
SchI	GAGTC	2 cut(s)	241, 630
ScrFI	CCNGG	2 cut(s)	246, 468
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	7 cut(s)	167, 386, 408, 427, 472, 517, 673
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	2 cut(s)	351, 769
SfuI	TTCGAA	1 cut(s)	736
SmiMI	CAYNNNNRTG	1 cut(s)	11
Sse9I	AATT	7 cut(s)	99, 106, 192, 415, 486, 762, 807
SsiI	CCGC	4 cut(s)	84, 572, 751, 782
SspMI	CTAG	2 cut(s)	263, 629
StyD4I	CCNGG	2 cut(s)	244, 466
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	3 cut(s)	34, 44, 354
TaqI	TCGA	5 cut(s)	20, 225, 323, 373, 736
TasI	AATT	7 cut(s)	99, 106, 192, 415, 486, 762, 807
TauI	GCSGC	2 cut(s)	753, 785
TfiI	GAWTC	4 cut(s)	17, 22, 647, 695
TscAI	CASTG	1 cut(s)	804
TspDTI	ATGAA	2 cut(s)	344, 434
TspGWI	ACGGA	3 cut(s)	325, 495, 833
TspRI	CASTG	1 cut(s)	804
XapI	RAATTY	1 cut(s)	106
XbaI	TCTAGA	2 cut(s)	262, 628
XspI	CTAG	2 cut(s)	263, 629
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.