Rorug05G0493700

VAMP-like protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
67646816 .. 67647016
201 bp
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UTR
Exon/CDS
Intron
Rorug05G0493700.1

Sequence Viewer

Length: 201 bp
ATGAGGAATATCTTTCTAGTGTGTCGCCGCAGTTGTAAAGCGAATAAAGTAGCCAGTTGTGCACTCTTCGCTAATTGGTGTTTGTTAAAATACATATATTTAGTTGAGACTCCTGTTATTATCTCGGCATGTTCTCTTTATGCTTATTGTATTTTAGGATTTAGGCAAAATGTCCCCCCATGTATTCTACGGTTTCATTAA

Protein Analysis

66

Amino Acids

7.62

Weight (kDa)

9.33

Isoelectric Point (pI)

74.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 28
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 60
ApaLI GTGCAC 1 cut(s) 60
BaeGI GKGCMC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 17
BisI GCNGC 1 cut(s) 28
BlsI GCNGC 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 64
BsiHKAI GWGCWC 1 cut(s) 64
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 101
BsmFI GGGAC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 64
BspACI CCGC 1 cut(s) 28
BsrI ACTGG 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNSI RCATGY 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 64
CviAII CATG 2 cut(s) 129, 180
CviJI RGCY 1 cut(s) 53
CviKI_1 RGCY 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 71
EarI CTCTTC 1 cut(s) 71
FaeI CATG 2 cut(s) 132, 183
FaiI YATR 5 cut(s) 95, 97, 130, 141, 181
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 128, 179
Fnu4HI GCNGC 1 cut(s) 28
Fsp4HI GCNGC 1 cut(s) 28
FspBI CTAG 1 cut(s) 17
GluI GCNGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 132, 183
HinfI GANTC 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 62
Hpy8I GTNNAC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
Hsp92II CATG 2 cut(s) 132, 183
LpnPI CCDG 2 cut(s) 67, 126
MaeI CTAG 1 cut(s) 17
MboII GAAGA 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 1 cut(s) 73
MlyI GAGTC 1 cut(s) 103
MseI TTAA 2 cut(s) 86, 199
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NlaIII CATG 2 cut(s) 132, 183
NmeAIII GCCGAG 1 cut(s) 104
NspI RCATGY 1 cut(s) 132
PkrI GCNGC 1 cut(s) 29
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 86, 199
SatI GCNGC 1 cut(s) 28
SchI GAGTC 1 cut(s) 103
SduI GDGCHC 1 cut(s) 64
SgeI CNNG 6 cut(s) 29, 66, 125, 136, 141, 192
Sse9I AATT 1 cut(s) 73
SsiI CCGC 1 cut(s) 28
SspMI CTAG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 192
TasI AATT 1 cut(s) 73
TauI GCSGC 1 cut(s) 30
Tru1I TTAA 2 cut(s) 86, 199
Tru9I TTAA 2 cut(s) 86, 199
TspDTI ATGAA 1 cut(s) 185
VneI GTGCAC 1 cut(s) 60
XceI RCATGY 1 cut(s) 132
XspI CTAG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.