Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Forward (+)

6344301 .. 6345610

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGGTTTAATCAAGAACACAGTTCATTACTGTTGTGTCTCAAGAGACAATCAGATTCTTTACTCTTACAACGGTGGAGACCAAACCAACGAGAGTCTTGCTGCTCTGTGTTTAGAAAAGTCTCCTCCTTTTCATACTTGGTACTTTGAAACTATTGGTAAAAGAAGATTTGGGTTTTTAATTGGAGATGGGTTTGTTTATTTCGCCATTGTTGATGAGGTTTTGAAGAGATCTAGTGTTCTTAAGTTTCTTGAACATTTGAGAGATGAATTTAAGAAAGCTGCTAGGGAGAATTCTAGAGGAAGTTTTACTGCTATGATTGGTTCTATTAATGTTGAAGATCAGCTTGTTCCTGTTGTTACTAGACTTATAGCTTCTCTTGAACGTGTTGCTGAGAGTAGTAGTAACAATGAATTGAAGAGTAGTAATCTTGGTGAACAAAGCGAAGGTTCGAATTCTACTAAAGCTCCGTTGTTGGGGAGGTTAAGTAAGCAAGAGAAGAAGAAAGGGAAAGATCATGTGATTGAGCTTGAGGAACACAGGAAGTCTAATGATAGAGGGAACATAACCGATGATTCAGCGGGAGCTGGAACGTCGTTGGAGAAGGAGTGTGTGTCGAGTAGTGGACGTTCTGTTACTCAAAGCTTTGAATGGAAATGGCGGCGGTTAGTTCAGATTGTTCTTGCTATTGATGCAGCTATTTGCTTGACACTGTTTGGTATTTGGTTGGCTATATGTCGGGGTATCGAGTGTACACGTTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

254

Amino Acids

28.36

Weight (kDa)

8.12

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	581, 661, 664
AcsI	RAATTY	3 cut(s)	269, 292, 454
AfaI	GTAC	2 cut(s)	143, 754
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflII	CTTAAG	1 cut(s)	242
AflIII	ACRYGT	2 cut(s)	385, 755
AgsI	TTSAA	7 cut(s)	149, 226, 254, 338, 383, 418, 650
AleI	CACNNNNGTG	1 cut(s)	760
AluBI	AGCT	8 cut(s)	281, 346, 374, 467, 529, 587, 645, 698
AluI	AGCT	8 cut(s)	281, 346, 374, 467, 529, 587, 645, 698
Alw26I	GTCTC	4 cut(s)	39, 43, 72, 126
ApeKI	GCWGC	3 cut(s)	101, 281, 695
ApoI	RAATTY	3 cut(s)	269, 292, 454
AseI	ATTAAT	1 cut(s)	330
AsuHPI	GGTGA	1 cut(s)	446
AsuII	TTCGAA	1 cut(s)	452
BbvI	GCAGC	3 cut(s)	88, 268, 707
BccI	CCATC	1 cut(s)	182
BcgI	CGANNNNNNTGC	2 cut(s)	80, 114
BcoDI	GTCTC	4 cut(s)	39, 43, 72, 126
BfaI	CTAG	4 cut(s)	234, 285, 297, 363
BfrI	CTTAAG	1 cut(s)	242
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	4 cut(s)	102, 282, 662, 696
BlsI	GCNGC	4 cut(s)	103, 283, 663, 697
BmsI	GCATC	1 cut(s)	682
Bpu14I	TTCGAA	1 cut(s)	452
BpuEI	CTTGAG	2 cut(s)	25, 551
BsaI	GGTCTC	1 cut(s)	72
BsaXI	ACNNNNNCTCC	8 cut(s)	451, 472, 481, 502, 593, 599, 623, 629
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseMII	CTCAG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	88, 268, 707
BslI	CCNNNNNNNGG	1 cut(s)	476
BsmAI	GTCTC	4 cut(s)	39, 43, 72, 126
Bso31I	GGTCTC	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	452
Bsp1407I	TGTACA	1 cut(s)	752
Bsp143I	GATC	3 cut(s)	230, 340, 514
BspACI	CCGC	3 cut(s)	581, 661, 664
BspCNI	CTCAG	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	452
BspTI	CTTAAG	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	72
BsrGI	TGTACA	1 cut(s)	752
BssMI	GATC	3 cut(s)	230, 340, 514
Bst4CI	ACNGT	4 cut(s)	22, 32, 74, 714
Bst6I	CTCTTC	2 cut(s)	221, 413
BstAFI	CTTAAG	1 cut(s)	242
BstAUI	TGTACA	1 cut(s)	752
BstBI	TTCGAA	1 cut(s)	452
BstDEI	CTNAG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	233, 343, 517
BstMAI	GTCTC	4 cut(s)	39, 43, 72, 126
BstMBI	GATC	3 cut(s)	230, 340, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstV1I	GCAGC	3 cut(s)	88, 268, 707
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	710
Csp6I	GTAC	2 cut(s)	142, 753
CviAII	CATG	1 cut(s)	518
CviJI	RGCY	9 cut(s)	281, 346, 374, 467, 529, 587, 645, 698, 731
CviKI_1	RGCY	9 cut(s)	281, 346, 374, 467, 529, 587, 645, 698, 731
CviQI	GTAC	2 cut(s)	142, 753
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	3 cut(s)	232, 342, 516
DpnII	GATC	3 cut(s)	230, 340, 514
Eam1104I	CTCTTC	2 cut(s)	221, 413
EarI	CTCTTC	2 cut(s)	221, 413
Eco31I	GGTCTC	1 cut(s)	72
EcoRI	GAATTC	2 cut(s)	292, 454
FaeI	CATG	1 cut(s)	521
FaiI	YATR	7 cut(s)	135, 317, 371, 519, 566, 734, 736
FalI	AAGNNNNNCTT	2 cut(s)	330, 362
FatI	CATG	1 cut(s)	517
FauI	CCCGC	1 cut(s)	574
Fnu4HI	GCNGC	4 cut(s)	102, 282, 662, 696
Fsp4HI	GCNGC	4 cut(s)	102, 282, 662, 696
FspBI	CTAG	4 cut(s)	234, 285, 297, 363
GluI	GCNGC	4 cut(s)	102, 282, 662, 696
Hin1II	CATG	1 cut(s)	521
HindIII	AAGCTT	1 cut(s)	643
HinfI	GANTC	3 cut(s)	55, 94, 575
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	4 cut(s)	437, 626, 753, 755
Hpy188I	TCNGA	2 cut(s)	54, 675
Hpy188III	TCNNGA	6 cut(s)	13, 42, 251, 297, 380, 762
Hpy8I	GTNNAC	4 cut(s)	437, 626, 753, 755
Hpy99I	CGWCG	1 cut(s)	598
HpyAV	CCTTC	2 cut(s)	440, 598
HpyCH4III	ACNGT	4 cut(s)	22, 32, 74, 714
HpyCH4IV	ACGT	4 cut(s)	385, 593, 628, 757
HpyCH4V	TGCA	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	1 cut(s)	393
HpySE526I	ACGT	4 cut(s)	385, 593, 628, 757
Hsp92II	CATG	1 cut(s)	521
Kzo9I	GATC	3 cut(s)	230, 340, 514
LmnI	GCTCC	2 cut(s)	472, 584
LpnPI	CCDG	3 cut(s)	366, 526, 573
Lsp1109I	GCAGC	3 cut(s)	88, 268, 707
LweI	GCATC	1 cut(s)	682
MaeI	CTAG	4 cut(s)	234, 285, 297, 363
MaeII	ACGT	4 cut(s)	385, 593, 628, 757
MaeIII	GTNAC	3 cut(s)	358, 404, 634
MalI	GATC	3 cut(s)	232, 342, 516
MboI	GATC	3 cut(s)	230, 340, 514
MboII	GAAGA	6 cut(s)	177, 238, 350, 430, 511, 514
MflI	RGATCY	1 cut(s)	230
MluCI	AATT	5 cut(s)	180, 269, 292, 413, 454
MlyI	GAGTC	1 cut(s)	103
MmeI	TCCRAC	1 cut(s)	579
MnlI	CCTC	6 cut(s)	135, 211, 293, 474, 526, 551
MseI	TTAA	6 cut(s)	8, 179, 243, 273, 330, 485
MslI	CAYNNNNRTG	1 cut(s)	760
MspA1I	CMGCKG	1 cut(s)	581
MspCI	CTTAAG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	692
NdeII	GATC	3 cut(s)	230, 340, 514
NlaIII	CATG	1 cut(s)	521
NspV	TTCGAA	1 cut(s)	452
OliI	CACNNNNGTG	1 cut(s)	760
PfeI	GAWTC	2 cut(s)	55, 575
PkrI	GCNGC	4 cut(s)	103, 283, 663, 697
PleI	GAGTC	1 cut(s)	102
PpsI	GAGTC	1 cut(s)	102
PshBI	ATTAAT	1 cut(s)	330
PsrI	GAACNNNNNNTAC	2 cut(s)	613, 645
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	2 cut(s)	143, 754
RsaNI	GTAC	2 cut(s)	142, 753
RseI	CAYNNNNRTG	1 cut(s)	760
SaqAI	TTAA	6 cut(s)	8, 179, 243, 273, 330, 485
SatI	GCNGC	4 cut(s)	102, 282, 662, 696
Sau3AI	GATC	3 cut(s)	230, 340, 514
SchI	GAGTC	1 cut(s)	103
SfaNI	GCATC	1 cut(s)	682
SfuI	TTCGAA	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	760
SmlI	CTYRAG	3 cut(s)	40, 242, 530
SmoI	CTYRAG	3 cut(s)	40, 242, 530
Sse9I	AATT	5 cut(s)	180, 269, 292, 413, 454
SsiI	CCGC	3 cut(s)	581, 661, 664
SspMI	CTAG	4 cut(s)	234, 285, 297, 363
TaaI	ACNGT	4 cut(s)	22, 32, 74, 714
TaiI	ACGT	4 cut(s)	388, 596, 631, 760
TaqI	TCGA	3 cut(s)	452, 617, 747
TasI	AATT	5 cut(s)	180, 269, 292, 413, 454
TatI	WGTACW	1 cut(s)	752
TauI	GCSGC	1 cut(s)	664
TfiI	GAWTC	2 cut(s)	55, 575
Tru1I	TTAA	6 cut(s)	8, 179, 243, 273, 330, 485
Tru9I	TTAA	6 cut(s)	8, 179, 243, 273, 330, 485
TscAI	CASTG	1 cut(s)	717
TseI	GCWGC	3 cut(s)	101, 281, 695
TspDTI	ATGAA	4 cut(s)	14, 122, 282, 426
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	717
Vha464I	CTTAAG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	330
XapI	RAATTY	3 cut(s)	269, 292, 454
XbaI	TCTAGA	1 cut(s)	296
XspI	CTAG	4 cut(s)	234, 285, 297, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.