Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8370991.1

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

794 .. 1069

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8370991.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

atgagagacattgagttggaggaacataggagatctgctgacagagcagtcaatctagatccattgactttggattctaataaccatggtgtagcaggttcttcagttaccttacaaaaggattcaggctcaatgaggattagatcaggctctcagagcattcgaaagaagtggtgccgccaagtgcgaattatccttgctattgatgcggctgtttgtgtagcactgcttgtgatttggttattggtttgtcatggcattgagtgcatccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

91

Amino Acids

10.17

Weight (kDa)

8.91

Isoelectric Point (pI)

59.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	86
AccB1I	GGYRCC	1 cut(s)	174
AciI	CCGC	2 cut(s)	178, 209
AclWI	GGATC	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	87
AlwI	GGATC	1 cut(s)	53
AsuII	TTCGAA	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	174
BfaI	CTAG	1 cut(s)	56
BfuAI	ACCTGC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	32
BisI	GCNGC	2 cut(s)	178, 210
BlsI	GCNGC	2 cut(s)	179, 211
BmiI	GGNNCC	1 cut(s)	176
BmsI	GCATC	1 cut(s)	196
Bpu14I	TTCGAA	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	85
BseDI	CCNNGG	1 cut(s)	85
BseGI	GGATG	1 cut(s)	267
BseMII	CTCAG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	32, 58, 143
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	178, 209
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	86
BspPI	GGATC	1 cut(s)	53
BspT104I	TTCGAA	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	174
BssECI	CCNNGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	32, 58, 143
BssT1I	CCWWGG	1 cut(s)	85
BstAPI	GCANNNNNTGC	1 cut(s)	264
BstBI	TTCGAA	1 cut(s)	163
BstDEI	CTNAG	1 cut(s)	153
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	3 cut(s)	35, 61, 146
BstMBI	GATC	3 cut(s)	32, 58, 143
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 156, 206, 264
BstX2I	RGATCY	2 cut(s)	32, 58
BstYI	RGATCY	2 cut(s)	32, 58
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	267
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	1 cut(s)	224
BveI	ACCTGC	1 cut(s)	86
CviAII	CATG	2 cut(s)	86, 254
CviJI	RGCY	3 cut(s)	129, 150, 212
CviKI_1	RGCY	3 cut(s)	129, 150, 212
DdeI	CTNAG	1 cut(s)	153
DpnI	GATC	3 cut(s)	34, 60, 145
DpnII	GATC	3 cut(s)	32, 58, 143
DrdI	GACNNNNNNGTC	1 cut(s)	47
DseDI	GACNNNNNNGTC	1 cut(s)	47
Eco130I	CCWWGG	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	2 cut(s)	89, 257
FaiI	YATR	3 cut(s)	27, 87, 255
FatI	CATG	2 cut(s)	85, 253
Fnu4HI	GCNGC	2 cut(s)	178, 210
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	178, 210
FspBI	CTAG	1 cut(s)	56
GluI	GCNGC	2 cut(s)	178, 210
Hin1II	CATG	2 cut(s)	89, 257
HinfI	GANTC	2 cut(s)	74, 122
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 156, 206, 264
HpyF3I	CTNAG	1 cut(s)	153
Hsp92II	CATG	2 cut(s)	89, 257
Kzo9I	GATC	3 cut(s)	32, 58, 143
LpnPI	CCDG	3 cut(s)	81, 111, 132
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	56
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	3 cut(s)	34, 60, 145
MboI	GATC	3 cut(s)	32, 58, 143
MboII	GAAGA	1 cut(s)	93
MflI	RGATCY	2 cut(s)	32, 58
MluCI	AATT	1 cut(s)	189
MnlI	CCTC	2 cut(s)	13, 129
Mva1269I	GAATGC	1 cut(s)	159
MwoI	GCNNNNNNNGC	4 cut(s)	44, 156, 206, 264
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	3 cut(s)	32, 58, 143
NlaIII	CATG	2 cut(s)	89, 257
NlaIV	GGNNCC	1 cut(s)	176
NspV	TTCGAA	1 cut(s)	163
PctI	GAATGC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	74, 122
PkrI	GCNGC	2 cut(s)	179, 211
PspN4I	GGNNCC	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	32, 58
SatI	GCNGC	2 cut(s)	178, 210
Sau3AI	GATC	3 cut(s)	32, 58, 143
SetI	ASST	2 cut(s)	100, 113
SfaNI	GCATC	1 cut(s)	196
SfuI	TTCGAA	1 cut(s)	163
SgeI	CNNG	9 cut(s)	68, 98, 108, 138, 159, 194, 209, 242, 266
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	178, 209
SspMI	CTAG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	85
TaqI	TCGA	1 cut(s)	163
TasI	AATT	1 cut(s)	189
TauI	GCSGC	2 cut(s)	180, 212
TfiI	GAWTC	2 cut(s)	74, 122
TscAI	CASTG	1 cut(s)	231
TspGWI	ACGGA	1 cut(s)	260
TspRI	CASTG	1 cut(s)	231
XbaI	TCTAGA	1 cut(s)	55
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.