Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

151353 .. 152265

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g00110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGCTGAGCATGAGGTTCTACTATACTTGCTTGGGTTCCGTTCAAAATACAGTTTACTACTGTTGTGTGTCAAGGGGTGACCGGATCCTCTACGTGTATAGTGGCGGAGAAGGTGAAATTGAGAACTTGGCTTCCTTGTGTTTGGAAAAGACTCCTCCTTTTCATAGGTGGTATTTTGAGACGGTGGGTAAAAGGACTTATGGTTTCTTAATTGAAGATGCCTATGTTTATTTCACAATTGTTGATGATAGTCTGGGCAATACCGGGGTTCTTCAGTTTTTAGAGCATTTGAGAGATGAATTCAAGAAGGTAGCCAGGAAGGGTTTAAGGGGAAGTTTGTCAAGTGTTATGAGTTCTGTTGGCATACAAGAACAGCTAGTTCCTGTTATCCACCGCTTGATCACCTCCTTGGAGAATGTTTCTCATGGTGGTAGTAATTGGACAGCTGAAGCTTCTCCGTCACTTCATGCTGGTCTTTCTCCTTCACCAAGTAGTGCAAATGGTCAAATTGAAGTTGCCAATTCTACAAAAGCCCCTCTGTTGGGGAAGTCCAGCAAGCAAGACAAGAAGAAGGCTAAAGAGCATGTGATTGCAGTGAGAGACATCGAGTTGGAGGAACATAGGAAATCTACGGATAGAGGAGTCAGTATTGACTCAGCTAATTCGGGTTCCAATAACCAAGCTGGAGCAGGTTCTTCAATTGCATTACAAAAGGATTTGGGATCAATGAGGATTAGGTCTCAAAGCATTCGAAAGAAGTGGTGCCGCCAAGTGCGAATTGTCCTTGCCGTTGATGCAGCTGTTTGTGTTATACTGTTTGTGATTTGGTTACTTATTTGTCATGGTATCGAGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

288

Amino Acids

31.72

Weight (kDa)

8.85

Isoelectric Point (pI)

45.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	680
AccB1I	GGYRCC	1 cut(s)	762
AciI	CCGC	3 cut(s)	105, 394, 766
AclWI	GGATC	3 cut(s)	79, 92, 730
AcsI	RAATTY	1 cut(s)	299
AcuI	CTGAAG	2 cut(s)	257, 468
AfiI	CCNNNNNNNGG	2 cut(s)	541, 542
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	5 cut(s)	44, 215, 304, 512, 699
AjnI	CCWGG	1 cut(s)	314
AloI	GAACNNNNNNTCC	2 cut(s)	116, 148
AluBI	AGCT	6 cut(s)	376, 446, 452, 659, 683, 800
AluI	AGCT	6 cut(s)	376, 446, 452, 659, 683, 800
Alw26I	GTCTC	3 cut(s)	173, 594, 744
AlwI	GGATC	3 cut(s)	79, 92, 730
ApeKI	GCWGC	1 cut(s)	797
ApoI	RAATTY	1 cut(s)	299
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	4 cut(s)	89, 125, 394, 477
AsuII	TTCGAA	1 cut(s)	751
BamHI	GGATCC	1 cut(s)	84
BanI	GGYRCC	1 cut(s)	762
BbvI	GCAGC	1 cut(s)	809
BceAI	ACGGC	1 cut(s)	773
BciT130I	CCWGG	1 cut(s)	316
BclI	TGATCA	1 cut(s)	399
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	173, 594, 744
BfaI	CTAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	680
BisI	GCNGC	2 cut(s)	766, 798
BlpI	GCTNAGC	1 cut(s)	5
BlsI	GCNGC	2 cut(s)	767, 799
Bme1390I	CCNGG	2 cut(s)	265, 316
BmiI	GGNNCC	4 cut(s)	37, 86, 670, 764
BmrFI	CCNGG	2 cut(s)	265, 316
BmsI	GCATC	2 cut(s)	208, 784
BpmI	CTGGAG	1 cut(s)	705
Bpu1102I	GCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	751
BpuMI	CCSGG	1 cut(s)	265
BsaAI	YACGTR	1 cut(s)	94
BsaI	GGTCTC	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	264, 408
BsaWI	WCCGGW	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	2 cut(s)	541, 542
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	2 cut(s)	264, 408
BseGI	GGATG	1 cut(s)	855
BseLI	CCNNNNNNNGG	2 cut(s)	541, 542
BseMII	CTCAG	1 cut(s)	669
BseRI	GAGGAG	2 cut(s)	144, 654
BseXI	GCAGC	1 cut(s)	809
BshNI	GGYRCC	1 cut(s)	762
BsiSI	CCGG	2 cut(s)	82, 264
BslI	CCNNNNNNNGG	2 cut(s)	541, 542
BsmAI	GTCTC	3 cut(s)	173, 594, 744
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	747
Bso31I	GGTCTC	1 cut(s)	744
Bsp119I	TTCGAA	1 cut(s)	751
Bsp143I	GATC	3 cut(s)	84, 399, 722
Bsp1720I	GCTNAGC	1 cut(s)	5
BspACI	CCGC	3 cut(s)	105, 394, 766
BspCNI	CTCAG	1 cut(s)	668
BspLI	GGNNCC	4 cut(s)	37, 86, 670, 764
BspMI	ACCTGC	1 cut(s)	680
BspPI	GGATC	3 cut(s)	79, 92, 730
BspT104I	TTCGAA	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	762
BspTNI	GGTCTC	1 cut(s)	744
BssECI	CCNNGG	2 cut(s)	264, 408
BssMI	GATC	3 cut(s)	84, 399, 722
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	4 cut(s)	52, 62, 184, 816
BstBAI	YACGTR	1 cut(s)	94
BstBI	TTCGAA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	557
BstDEI	CTNAG	2 cut(s)	5, 655
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	855
BstKTI	GATC	3 cut(s)	87, 402, 725
BstMAI	GTCTC	3 cut(s)	173, 594, 744
BstMBI	GATC	3 cut(s)	84, 399, 722
BstMWI	GCNNNNNNNGC	1 cut(s)	794
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	263, 314
BstV1I	GCAGC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	855
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	600
BveI	ACCTGC	1 cut(s)	680
Cac8I	GCNNGC	1 cut(s)	557
CviAII	CATG	5 cut(s)	10, 425, 467, 584, 842
DdeI	CTNAG	2 cut(s)	5, 655
DpnI	GATC	3 cut(s)	86, 401, 724
DpnII	GATC	3 cut(s)	84, 399, 722
EciI	GGCGGA	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	744
Eco57I	CTGAAG	2 cut(s)	257, 468
Eco91I	GGTNACC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	77
EcoRI	GAATTC	1 cut(s)	299
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	5 cut(s)	13, 428, 470, 587, 845
FatI	CATG	5 cut(s)	9, 424, 466, 583, 841
FbaI	TGATCA	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	766, 798
FokI	GGATG	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	766, 798
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	2 cut(s)	766, 798
GsuI	CTGGAG	1 cut(s)	705
HapII	CCGG	2 cut(s)	82, 264
Hin1II	CATG	5 cut(s)	13, 428, 470, 587, 845
HindIII	AAGCTT	1 cut(s)	450
HinfI	GANTC	3 cut(s)	151, 642, 653
HpaII	CCGG	2 cut(s)	82, 264
HphI	GGTGA	4 cut(s)	89, 125, 394, 477
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	304
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	5 cut(s)	104, 301, 313, 492, 565
HpyCH4III	ACNGT	4 cut(s)	52, 62, 184, 816
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	5 cut(s)	497, 593, 704, 797, 855
HpyF10VI	GCNNNNNNNGC	1 cut(s)	794
HpyF3I	CTNAG	2 cut(s)	5, 655
HpySE526I	ACGT	1 cut(s)	93
Hsp92II	CATG	5 cut(s)	13, 428, 470, 587, 845
Ksp22I	TGATCA	1 cut(s)	399
Kzo9I	GATC	3 cut(s)	84, 399, 722
LmnI	GCTCC	1 cut(s)	686
Lsp1109I	GCAGC	1 cut(s)	809
LweI	GCATC	2 cut(s)	208, 784
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	93
MaeIII	GTNAC	3 cut(s)	77, 459, 828
MalI	GATC	3 cut(s)	86, 401, 724
MboI	GATC	3 cut(s)	84, 399, 722
MboII	GAAGA	4 cut(s)	227, 263, 580, 687
MfeI	CAATTG	2 cut(s)	237, 699
MflI	RGATCY	1 cut(s)	84
MlyI	GAGTC	3 cut(s)	145, 647, 651
MmeI	TCCRAC	1 cut(s)	591
MnlI	CCTC	8 cut(s)	6, 98, 165, 415, 546, 607, 632, 723
MseI	TTAA	2 cut(s)	209, 326
MspA1I	CMGCKG	2 cut(s)	446, 800
MspI	CCGG	2 cut(s)	82, 264
MspR9I	CCNGG	2 cut(s)	265, 316
MunI	CAATTG	2 cut(s)	237, 699
Mva1269I	GAATGC	1 cut(s)	747
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	1 cut(s)	794
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	84, 399, 722
NlaIII	CATG	5 cut(s)	13, 428, 470, 587, 845
NlaIV	GGNNCC	4 cut(s)	37, 86, 670, 764
NmuCI	GTSAC	2 cut(s)	77, 459
NspI	RCATGY	1 cut(s)	587
NspV	TTCGAA	1 cut(s)	751
PctI	GAATGC	1 cut(s)	747
PkrI	GCNGC	2 cut(s)	767, 799
PleI	GAGTC	3 cut(s)	145, 647, 650
PpsI	GAGTC	3 cut(s)	145, 647, 650
Ppu21I	YACGTR	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	314
PspEI	GGTNACC	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	4 cut(s)	37, 86, 670, 764
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	2 cut(s)	446, 800
SaqAI	TTAA	2 cut(s)	209, 326
SatI	GCNGC	2 cut(s)	766, 798
Sau3AI	GATC	3 cut(s)	84, 399, 722
SchI	GAGTC	3 cut(s)	145, 647, 651
ScrFI	CCNGG	2 cut(s)	265, 316
SfaNI	GCATC	2 cut(s)	208, 784
SfuI	TTCGAA	1 cut(s)	751
SsiI	CCGC	3 cut(s)	105, 394, 766
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	263, 314
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	4 cut(s)	52, 62, 184, 816
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	3 cut(s)	606, 751, 849
TauI	GCSGC	1 cut(s)	768
Tru1I	TTAA	2 cut(s)	209, 326
Tru9I	TTAA	2 cut(s)	209, 326
TscAI	CASTG	1 cut(s)	600
TseFI	GTSAC	2 cut(s)	77, 459
TseI	GCWGC	1 cut(s)	797
Tsp45I	GTSAC	2 cut(s)	77, 459
TspDTI	ATGAA	3 cut(s)	152, 312, 455
TspGWI	ACGGA	4 cut(s)	28, 447, 647, 848
TspRI	CASTG	1 cut(s)	600
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	587
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.