Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

245353 .. 247721

Gene Structure 2369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G002800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGGTTCCATTCAAAATACCGTTTACTACTGTTGTGTATCAAGGGGTAATCGGATCCTTTATGTATACAGTGGTGGAGATGGTGAAATTGAGAACTTGGCTACTTTGTGCTTGGAAAAGACTCCTCCTTTTCATAGGTGGTATTTTGAGACAGTGGGCAAAAGGACTTATGGGTTCCTAATTGAAGATGGGTATATTTATTTCACAATTGTTGATGAGAGTCTGGGAAGCCCTGGTGTTCTTCAATTTCTGGAGCATTTGAGAGACGAATTCAAGAAGGTAGACAGGAAGGGTTCCAGGGGAAGTTTGTCGAGTATGAGCTCTGTTGGCATACAAGAACAGTTAGTCCCCGTTATCCACCGCTTGATCACCTCCTTGGAGAATGTTTCTCAGAGTGGTAGTAATTGGACAGCTGAAACTTCCCTGTCACTTCATGCTGGTCTTTCTCCATCACCAAATGGTGCAAACGGACAAACTGAAGTTGCCACTTCTACAAAAGCCCCTCTATTGGGGAAGCCTAACAAGCAAGATAAGAAGAAGGCGAAAGATCATGTTATTGCTATGAGAGACATTGAGTTGGAGGAACATAGGAAATCTACGGATAGAGGTGTCAATATTGACTCAGCAAATTCAGATTCTAATAGCCATGCTGGAGCAGGTTCTTCAATTGCATTACAAAAAGATTTGGGCTCAATGAGGATTAGGTCAGGCTCTCAAGGCATTCGAAAGAAGTGGTGTCGCCAAGTGCGAATCGTCCTTGCCATTGATGCGGCTGTTTGTGTAATACTGTTTGTGATATGGTTATTGATATGTAATGGTATTGCGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

279

Amino Acids

30.56

Weight (kDa)

8.78

Isoelectric Point (pI)

41.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	647
AccI	GTMKAC	2 cut(s)	66, 282
AciI	CCGC	2 cut(s)	361, 770
AclWI	GGATC	2 cut(s)	49, 62
AcsI	RAATTY	2 cut(s)	269, 628
AcuI	CTGAAG	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	508, 509
AgsI	TTSAA	5 cut(s)	14, 185, 245, 274, 666
AjnI	CCWGG	2 cut(s)	232, 296
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	321, 413
AluI	AGCT	2 cut(s)	321, 413
Alw21I	GWGCWC	1 cut(s)	323
Alw26I	GTCTC	3 cut(s)	143, 258, 561
AlwI	GGATC	2 cut(s)	49, 62
ApoI	RAATTY	2 cut(s)	269, 628
AsuHPI	GGTGA	3 cut(s)	95, 361, 444
AsuII	TTCGAA	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	54
BanII	GRGCYC	2 cut(s)	323, 692
Bbv12I	GWGCWC	1 cut(s)	323
BccI	CCATC	3 cut(s)	74, 182, 457
BciT130I	CCWGG	2 cut(s)	234, 298
BclI	TGATCA	1 cut(s)	366
BcoDI	GTCTC	3 cut(s)	143, 258, 561
BfuAI	ACCTGC	1 cut(s)	647
BisI	GCNGC	1 cut(s)	771
BlsI	GCNGC	1 cut(s)	772
Bme1390I	CCNGG	2 cut(s)	234, 298
BmiI	GGNNCC	4 cut(s)	7, 56, 176, 295
BmrFI	CCNGG	2 cut(s)	234, 298
BmsI	GCATC	1 cut(s)	757
BpmI	CTGGAG	2 cut(s)	272, 672
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	1 cut(s)	699
BsaJI	CCNNGG	3 cut(s)	232, 297, 375
Bsc4I	CCNNNNNNNGG	2 cut(s)	508, 509
BseBI	CCWGG	2 cut(s)	234, 298
BseDI	CCNNGG	3 cut(s)	232, 297, 375
BseGI	GGATG	1 cut(s)	828
BseLI	CCNNNNNNNGG	2 cut(s)	508, 509
BseMII	CTCAG	2 cut(s)	404, 636
BseRI	GAGGAG	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	323
BslFI	GGGAC	1 cut(s)	332
BslI	CCNNNNNNNGG	2 cut(s)	508, 509
BsmAI	GTCTC	3 cut(s)	143, 258, 561
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	332
BsmI	GAATGC	1 cut(s)	720
Bsp119I	TTCGAA	1 cut(s)	724
Bsp1286I	GDGCHC	2 cut(s)	323, 692
Bsp143I	GATC	3 cut(s)	54, 366, 547
BspACI	CCGC	2 cut(s)	361, 770
BspCNI	CTCAG	2 cut(s)	403, 635
BspLI	GGNNCC	4 cut(s)	7, 56, 176, 295
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	2 cut(s)	49, 62
BspT104I	TTCGAA	1 cut(s)	724
BssECI	CCNNGG	3 cut(s)	232, 297, 375
BssMI	GATC	3 cut(s)	54, 366, 547
BssNAI	GTATAC	1 cut(s)	67
BssT1I	CCWWGG	1 cut(s)	375
Bst1107I	GTATAC	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	234, 298
Bst4CI	ACNGT	6 cut(s)	22, 32, 71, 154, 342, 789
BstBI	TTCGAA	1 cut(s)	724
BstC8I	GCNNGC	1 cut(s)	826
BstDEI	CTNAG	2 cut(s)	390, 622
BstF5I	GGATG	1 cut(s)	828
BstKTI	GATC	3 cut(s)	57, 369, 550
BstMAI	GTCTC	3 cut(s)	143, 258, 561
BstMBI	GATC	3 cut(s)	54, 366, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 523, 717, 767
BstNI	CCWGG	2 cut(s)	234, 298
BstSCI	CCNGG	2 cut(s)	232, 296
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BstZ17I	GTATAC	1 cut(s)	67
BtsCI	GGATG	1 cut(s)	828
BtsIMutI	CAGTG	2 cut(s)	76, 159
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	1 cut(s)	826
CviAII	CATG	3 cut(s)	434, 551, 647
DdeI	CTNAG	2 cut(s)	390, 622
DpnI	GATC	3 cut(s)	56, 368, 549
DpnII	GATC	3 cut(s)	54, 366, 547
Ecl136II	GAGCTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	375
Eco24I	GRGCYC	2 cut(s)	323, 692
Eco53kI	GAGCTC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	498
EcoICRI	GAGCTC	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	2 cut(s)	232, 296
EcoT14I	CCWWGG	1 cut(s)	375
EcoT38I	GRGCYC	2 cut(s)	323, 692
ErhI	CCWWGG	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	437, 554, 650
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	3 cut(s)	433, 550, 646
FbaI	TGATCA	1 cut(s)	366
FblI	GTMKAC	2 cut(s)	66, 282
Fnu4HI	GCNGC	1 cut(s)	771
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	2 cut(s)	323, 692
Fsp4HI	GCNGC	1 cut(s)	771
GluI	GCNGC	1 cut(s)	771
GsuI	CTGGAG	2 cut(s)	272, 672
Hin1II	CATG	3 cut(s)	437, 554, 650
HinfI	GANTC	5 cut(s)	121, 220, 620, 635, 750
HphI	GGTGA	3 cut(s)	95, 361, 444
Hpy166II	GTNNAC	3 cut(s)	25, 67, 283
Hpy188I	TCNGA	3 cut(s)	54, 393, 634
Hpy188III	TCNNGA	2 cut(s)	251, 274
Hpy8I	GTNNAC	3 cut(s)	25, 67, 283
HpyAV	CCTTC	3 cut(s)	271, 283, 532
HpyCH4III	ACNGT	6 cut(s)	22, 32, 71, 154, 342, 789
HpyCH4V	TGCA	3 cut(s)	464, 671, 828
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 523, 717, 767
HpyF3I	CTNAG	2 cut(s)	390, 622
Hsp92II	CATG	3 cut(s)	437, 554, 650
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	3 cut(s)	54, 366, 547
LmnI	GCTCC	2 cut(s)	253, 653
LweI	GCATC	1 cut(s)	757
MaeIII	GTNAC	1 cut(s)	426
MalI	GATC	3 cut(s)	56, 368, 549
MboI	GATC	3 cut(s)	54, 366, 547
MboII	GAAGA	4 cut(s)	197, 233, 547, 654
MfeI	CAATTG	2 cut(s)	207, 666
MflI	RGATCY	1 cut(s)	54
MhlI	GDGCHC	2 cut(s)	323, 692
MluCI	AATT	8 cut(s)	87, 180, 207, 245, 269, 403, 628, 666
MlyI	GAGTC	3 cut(s)	115, 229, 614
MmeI	TCCRAC	1 cut(s)	558
MnlI	CCTC	6 cut(s)	135, 382, 513, 574, 599, 690
MspA1I	CMGCKG	1 cut(s)	413
MspR9I	CCNGG	2 cut(s)	234, 298
MunI	CAATTG	2 cut(s)	207, 666
Mva1269I	GAATGC	1 cut(s)	720
MvaI	CCWGG	2 cut(s)	234, 298
MwoI	GCNNNNNNNGC	4 cut(s)	327, 523, 717, 767
NdeII	GATC	3 cut(s)	54, 366, 547
NlaIII	CATG	3 cut(s)	437, 554, 650
NlaIV	GGNNCC	4 cut(s)	7, 56, 176, 295
NmuCI	GTSAC	1 cut(s)	426
NspV	TTCGAA	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	745
PctI	GAATGC	1 cut(s)	720
PfeI	GAWTC	2 cut(s)	635, 750
PkrI	GCNGC	1 cut(s)	772
PleI	GAGTC	3 cut(s)	115, 228, 614
PpsI	GAGTC	3 cut(s)	115, 228, 614
Psp124BI	GAGCTC	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	232, 296
PspGI	CCWGG	2 cut(s)	232, 296
PspN4I	GGNNCC	4 cut(s)	7, 56, 176, 295
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	323
SatI	GCNGC	1 cut(s)	771
Sau3AI	GATC	3 cut(s)	54, 366, 547
SchI	GAGTC	3 cut(s)	115, 229, 614
ScrFI	CCNGG	2 cut(s)	234, 298
SduI	GDGCHC	2 cut(s)	323, 692
SetI	ASST	8 cut(s)	140, 282, 323, 374, 415, 610, 661, 707
SfaNI	GCATC	1 cut(s)	757
SfuI	TTCGAA	1 cut(s)	724
SmlI	CTYRAG	1 cut(s)	714
SmoI	CTYRAG	1 cut(s)	714
Sse9I	AATT	8 cut(s)	87, 180, 207, 245, 269, 403, 628, 666
SsiI	CCGC	2 cut(s)	361, 770
SspI	AATATT	1 cut(s)	616
SstI	GAGCTC	1 cut(s)	323
StyD4I	CCNGG	2 cut(s)	232, 296
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	6 cut(s)	22, 32, 71, 154, 342, 789
TaqI	TCGA	2 cut(s)	311, 724
TasI	AATT	8 cut(s)	87, 180, 207, 245, 269, 403, 628, 666
TauI	GCSGC	1 cut(s)	773
TfiI	GAWTC	2 cut(s)	635, 750
TscAI	CASTG	2 cut(s)	76, 159
TseFI	GTSAC	1 cut(s)	426
Tsp45I	GTSAC	1 cut(s)	426
TspDTI	ATGAA	2 cut(s)	122, 422
TspGWI	ACGGA	3 cut(s)	483, 614, 821
TspRI	CASTG	2 cut(s)	76, 159
XapI	RAATTY	2 cut(s)	269, 628
XmiI	GTMKAC	2 cut(s)	66, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.