Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006936.1

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

29381 .. 30220

Gene Structure 840 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006936.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

atgatggattcgattcaaactaccgtctattactgttgtgtatcaaagagtaatcggatcctctatgcatatagcggtggggatcacgaaattgagaatttggctactttgtgcttggagaaggctccgcctttccataaatggtatattgaaacctcgggtaagaggacttatgggtttctaattgaagatggatatgtttatttgactattgtcgatgagagtcttggaactcctggggttcttcagtttctagatcatttgagggacgagttcaagaatatagccaagaagggttcaaggggaagtttgtcgagtatgaactccgttggcatccaagaacagttagttcctgttatcaatcgattgataacctccttagaaagtgtttctcaggttggtagtaattggacagcagaaactcacccatcgcttcatgctggtctttctccatcaccaggtactgcaaacggacaaattgaagttgccagttctacaaaagcgcctctgctcgggaagtctaataagcaagagaagaagaaggcaaaagaacatgttattgcgatgagagacattgagttggaggaacataggagatctgctgacagagcagtcaatctagatccattgactttggattctaataaccatggtgtagcaggttcttcagttgccttacaaaaggattcaggctcaatgaggattagatcaggctctcagagcattcgaaagaagtggtgccgccaagtgcgaattatccttgctattgatgcggctgtttgtgtagcactgcttgtgatttggttattggtttgtcatggcattgagtgcatccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

279

Amino Acids

30.72

Weight (kDa)

8.41

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	611
Acc36I	ACCTGC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	738
AciI	CCGC	4 cut(s)	75, 128, 742, 773
AclWI	GGATC	4 cut(s)	52, 65, 90, 617
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	2 cut(s)	230, 651
AfaI	GTAC	1 cut(s)	463
AfiI	CCNNNNNNNGG	2 cut(s)	458, 512
AflIII	ACRYGT	1 cut(s)	553
AgsI	TTSAA	6 cut(s)	17, 152, 188, 277, 300, 482
AjnI	CCWGG	2 cut(s)	235, 457
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	4 cut(s)	52, 65, 90, 617
AlwNI	CAGNNNCTG	1 cut(s)	464
Ama87I	CYCGRG	2 cut(s)	157, 512
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	1 cut(s)	505
AsuHPI	GGTGA	2 cut(s)	416, 447
AsuII	TTCGAA	1 cut(s)	727
AvaI	CYCGRG	2 cut(s)	157, 512
BamHI	GGATCC	1 cut(s)	57
BanI	GGYRCC	1 cut(s)	738
BccI	CCATC	3 cut(s)	185, 436, 460
BciT130I	CCWGG	2 cut(s)	237, 459
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	2 cut(s)	254, 620
BfoI	RGCGCY	1 cut(s)	506
BfuAI	ACCTGC	1 cut(s)	650
BglII	AGATCT	1 cut(s)	596
BisI	GCNGC	2 cut(s)	742, 774
BlsI	GCNGC	2 cut(s)	743, 775
Bme1390I	CCNGG	2 cut(s)	237, 459
BmeT110I	CYCGRG	2 cut(s)	157, 512
BmiI	GGNNCC	3 cut(s)	59, 126, 740
BmrFI	CCNGG	2 cut(s)	237, 459
BmsI	GCATC	2 cut(s)	342, 760
BoxI	GACNNNNGTC	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	727
Bsa29I	ATCGAT	1 cut(s)	364
BsaJI	CCNNGG	3 cut(s)	156, 236, 649
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 512
Bse1I	ACTGG	1 cut(s)	489
BseBI	CCWGG	2 cut(s)	237, 459
BseCI	ATCGAT	1 cut(s)	364
BseDI	CCNNGG	3 cut(s)	156, 236, 649
BseGI	GGATG	2 cut(s)	333, 831
BseLI	CCNNNNNNNGG	2 cut(s)	458, 512
BseMII	CTCAG	2 cut(s)	407, 731
BseNI	ACTGG	1 cut(s)	489
BshNI	GGYRCC	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	157, 512
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	2 cut(s)	458, 512
BsmAI	GTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	723
BsoBI	CYCGRG	2 cut(s)	157, 512
Bsp119I	TTCGAA	1 cut(s)	727
Bsp143I	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
Bsp19I	CCATGG	1 cut(s)	649
BspACI	CCGC	4 cut(s)	75, 128, 742, 773
BspCNI	CTCAG	2 cut(s)	406, 730
BspDI	ATCGAT	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	59, 126, 740
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	4 cut(s)	52, 65, 90, 617
BspT104I	TTCGAA	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	3 cut(s)	156, 236, 649
BssMI	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
BssT1I	CCWWGG	1 cut(s)	649
Bst2UI	CCWGG	2 cut(s)	237, 459
Bst4CI	ACNGT	3 cut(s)	25, 35, 345
BstAPI	GCANNNNNTGC	1 cut(s)	828
BstBI	TTCGAA	1 cut(s)	727
BstDEI	CTNAG	3 cut(s)	379, 393, 717
BstDSI	CCRYGG	1 cut(s)	649
BstF5I	GGATG	2 cut(s)	333, 831
BstH2I	RGCGCY	1 cut(s)	506
BstHHI	GCGC	1 cut(s)	505
BstKTI	GATC	6 cut(s)	60, 85, 259, 599, 625, 710
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
BstMWI	GCNNNNNNNGC	4 cut(s)	608, 720, 770, 828
BstNI	CCWGG	2 cut(s)	237, 459
BstNSI	RCATGY	1 cut(s)	557
BstPAI	GACNNNNGTC	1 cut(s)	212
BstSCI	CCNGG	2 cut(s)	235, 457
BstX2I	RGATCY	3 cut(s)	57, 596, 622
BstYI	RGATCY	3 cut(s)	57, 596, 622
Bsu15I	ATCGAT	1 cut(s)	364
BsuTUI	ATCGAT	1 cut(s)	364
BtgI	CCRYGG	1 cut(s)	649
BtgZI	GCGATG	2 cut(s)	414, 578
BtsCI	GGATG	2 cut(s)	333, 831
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	1 cut(s)	788
BveI	ACCTGC	1 cut(s)	650
CaiI	CAGNNNCTG	1 cut(s)	464
CfoI	GCGC	1 cut(s)	505
ClaI	ATCGAT	1 cut(s)	364
CsiI	ACCWGGT	1 cut(s)	457
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	4 cut(s)	437, 554, 650, 818
CviJI	RGCY	6 cut(s)	104, 125, 287, 693, 714, 776
CviKI_1	RGCY	6 cut(s)	104, 125, 287, 693, 714, 776
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	3 cut(s)	379, 393, 717
DpnI	GATC	6 cut(s)	59, 84, 258, 598, 624, 709
DpnII	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
DrdI	GACNNNNNNGTC	1 cut(s)	611
DseDI	GACNNNNNNGTC	1 cut(s)	611
EciI	GGCGGA	1 cut(s)	117
Eco130I	CCWWGG	1 cut(s)	649
Eco57I	CTGAAG	2 cut(s)	230, 651
Eco88I	CYCGRG	2 cut(s)	157, 512
EcoRII	CCWGG	2 cut(s)	235, 457
EcoT14I	CCWWGG	1 cut(s)	649
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	649
FaeI	CATG	4 cut(s)	440, 557, 653, 821
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	4 cut(s)	436, 553, 649, 817
Fnu4HI	GCNGC	2 cut(s)	742, 774
FokI	GGATG	2 cut(s)	320, 818
Fsp4HI	GCNGC	2 cut(s)	742, 774
FspBI	CTAG	2 cut(s)	254, 620
GlaI	GCGC	1 cut(s)	504
GluI	GCNGC	2 cut(s)	742, 774
HaeII	RGCGCY	1 cut(s)	506
HhaI	GCGC	1 cut(s)	505
Hin1II	CATG	4 cut(s)	440, 557, 653, 821
Hin6I	GCGC	1 cut(s)	503
HinP1I	GCGC	1 cut(s)	503
HinfI	GANTC	5 cut(s)	8, 13, 223, 638, 686
HphI	GGTGA	2 cut(s)	416, 447
Hpy188I	TCNGA	2 cut(s)	57, 720
Hpy188III	TCNNGA	5 cut(s)	86, 254, 277, 514, 620
HpyAV	CCTTC	3 cut(s)	115, 286, 535
HpyCH4III	ACNGT	3 cut(s)	25, 35, 345
HpyCH4V	TGCA	3 cut(s)	68, 467, 831
HpyF10VI	GCNNNNNNNGC	4 cut(s)	608, 720, 770, 828
HpyF3I	CTNAG	3 cut(s)	379, 393, 717
Hsp92II	CATG	4 cut(s)	440, 557, 653, 821
HspAI	GCGC	1 cut(s)	503
Kzo9I	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
LmnI	GCTCC	1 cut(s)	130
LweI	GCATC	2 cut(s)	342, 760
MabI	ACCWGGT	1 cut(s)	457
MaeI	CTAG	2 cut(s)	254, 620
MalI	GATC	6 cut(s)	59, 84, 258, 598, 624, 709
MboI	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
MboII	GAAGA	5 cut(s)	200, 236, 547, 550, 657
MflI	RGATCY	3 cut(s)	57, 596, 622
MluCI	AATT	6 cut(s)	90, 97, 183, 406, 477, 753
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	8 cut(s)	71, 159, 166, 258, 385, 516, 577, 693
Mph1103I	ATGCAT	1 cut(s)	70
MspR9I	CCNGG	2 cut(s)	237, 459
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	2 cut(s)	237, 459
MwoI	GCNNNNNNNGC	4 cut(s)	608, 720, 770, 828
NcoI	CCATGG	1 cut(s)	649
NdeII	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
NlaIII	CATG	4 cut(s)	440, 557, 653, 821
NlaIV	GGNNCC	3 cut(s)	59, 126, 740
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	727
PciI	ACATGT	1 cut(s)	553
PctI	GAATGC	1 cut(s)	723
PfeI	GAWTC	4 cut(s)	8, 13, 638, 686
PkrI	GCNGC	2 cut(s)	743, 775
PleI	GAGTC	1 cut(s)	231
PpsI	GAGTC	1 cut(s)	231
PscI	ACATGT	1 cut(s)	553
PshAI	GACNNNNGTC	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	235, 457
PspGI	CCWGG	2 cut(s)	235, 457
PspN4I	GGNNCC	3 cut(s)	59, 126, 740
PstNI	CAGNNNCTG	1 cut(s)	464
PsuI	RGATCY	3 cut(s)	57, 596, 622
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SatI	GCNGC	2 cut(s)	742, 774
Sau3AI	GATC	6 cut(s)	57, 82, 256, 596, 622, 707
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	237, 459
SetI	ASST	5 cut(s)	158, 377, 399, 463, 664
SexAI	ACCWGGT	1 cut(s)	457
SfaNI	GCATC	2 cut(s)	342, 760
SfuI	TTCGAA	1 cut(s)	727
Sse9I	AATT	6 cut(s)	90, 97, 183, 406, 477, 753
SsiI	CCGC	4 cut(s)	75, 128, 742, 773
SspMI	CTAG	2 cut(s)	254, 620
StyD4I	CCNGG	2 cut(s)	235, 457
StyI	CCWWGG	1 cut(s)	649
TaaI	ACNGT	3 cut(s)	25, 35, 345
TaqI	TCGA	5 cut(s)	11, 216, 314, 364, 727
TasI	AATT	6 cut(s)	90, 97, 183, 406, 477, 753
TauI	GCSGC	2 cut(s)	744, 776
TfiI	GAWTC	4 cut(s)	8, 13, 638, 686
TscAI	CASTG	1 cut(s)	795
TspDTI	ATGAA	2 cut(s)	335, 425
TspGWI	ACGGA	3 cut(s)	316, 486, 824
TspRI	CASTG	1 cut(s)	795
XapI	RAATTY	1 cut(s)	97
XbaI	TCTAGA	2 cut(s)	253, 619
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	2 cut(s)	254, 620
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.