Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483427 .. 1485598

Gene Structure 2172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1005900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGGTTCCGTTCAAAATACAGTTTACTACTGTTGTGTGTCAAGGGGTAACCGGATCCTCTACGTGCATAGTAGCGGAGATGGTGAAATTGACAACTTGGCTTCTTTGTGTTTGGAAAAGACTCCTCCTTTTCATAGGTGGTATTTTGAGACGGTTGGTAAAAGGACTTATGGTTTCTTAATTGAAGATGCCTATGTTTATTTCACAATTGTTGATGATAGTTTGGGGAATACCGGGGTTCTTCAGTTTTTAGAGCATTTGAGAGACGAATTCAAGAAGGTATCCAGGAAGGGTTCAAGGGGAAGTTTGTCGAGTGTTATGAGTTCTGTTGGCATACAAGAACAGCTAGTTCCTGTTATCCACCGCTTGATCACCTCCTTGGAGAACGTTTCTCACGGTGGTAGCAATTGGACAGCTGAAGCTTCTCCATCACTTCATGCTGGTCTTTCTCCATCACCAAGTAGTGCCAATGGTCAAATTGAAGTTGCCAATTCTACAAAAGCCCCTCTCTTGGGGAAGTCCAGCAAGCAAGACAAGAAGAAGGCTAAAGAGCATGTGATTGCAATGAGAGACATCGAGTTGGAGGAACATAGGAAATCTACGGATAGAGGAGTCAGTATTGACTCAGCTAATTCGGGTTCCAATAACCAAGCTGGAGCAGGTTCTTCAATTGCATTACAAAAGGATTTGGGATCAATGAGGATTAGGTCAGGTTCTCAAAGCATTCGAAAGAAGTGGTGCCGCCAAGTGCGAATTGTCCTTGCCGTTGATGCAGCTGTTTGTGTTATACTGTTTGTGATTTGGTTATGGATTTGTCATGGTATCGAGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

280

Amino Acids

30.65

Weight (kDa)

8.93

Isoelectric Point (pI)

45.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	650
AccB1I	GGYRCC	1 cut(s)	738
AciI	CCGC	3 cut(s)	75, 364, 742
AclI	AACGTT	1 cut(s)	387
AclWI	GGATC	3 cut(s)	49, 62, 700
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	227, 438
AfiI	CCNNNNNNNGG	2 cut(s)	511, 512
AgsI	TTSAA	6 cut(s)	14, 185, 274, 297, 482, 669
AjnI	CCWGG	1 cut(s)	284
AluBI	AGCT	6 cut(s)	346, 416, 422, 629, 653, 776
AluI	AGCT	6 cut(s)	346, 416, 422, 629, 653, 776
Alw26I	GTCTC	3 cut(s)	143, 258, 564
AlwI	GGATC	3 cut(s)	49, 62, 700
ApeKI	GCWGC	1 cut(s)	773
ApoI	RAATTY	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	235
AsuHPI	GGTGA	3 cut(s)	95, 364, 447
AsuII	TTCGAA	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	738
BbvI	GCAGC	1 cut(s)	785
BccI	CCATC	3 cut(s)	74, 436, 460
BceAI	ACGGC	1 cut(s)	749
BciT130I	CCWGG	1 cut(s)	286
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	1 cut(s)	369
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	3 cut(s)	143, 258, 564
BfaI	CTAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	292
BisI	GCNGC	2 cut(s)	742, 774
BlsI	GCNGC	2 cut(s)	743, 775
Bme1390I	CCNGG	2 cut(s)	235, 286
BmiI	GGNNCC	4 cut(s)	7, 56, 640, 740
BmrFI	CCNGG	2 cut(s)	235, 286
BmsI	GCATC	2 cut(s)	178, 760
BpmI	CTGGAG	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	727
BpuMI	CCSGG	1 cut(s)	235
BsaAI	YACGTR	1 cut(s)	64
BsaJI	CCNNGG	2 cut(s)	234, 378
BsaWI	WCCGGW	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 512
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	234, 378
BseGI	GGATG	1 cut(s)	831
BseLI	CCNNNNNNNGG	2 cut(s)	511, 512
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	2 cut(s)	114, 624
BseXI	GCAGC	1 cut(s)	785
BshNI	GGYRCC	1 cut(s)	738
BsiSI	CCGG	2 cut(s)	52, 234
BslI	CCNNNNNNNGG	2 cut(s)	511, 512
BsmAI	GTCTC	3 cut(s)	143, 258, 564
BsmBI	CGTCTC	2 cut(s)	143, 258
BsmI	GAATGC	1 cut(s)	723
Bsp119I	TTCGAA	1 cut(s)	727
Bsp143I	GATC	3 cut(s)	54, 369, 692
BspACI	CCGC	3 cut(s)	75, 364, 742
BspCNI	CTCAG	1 cut(s)	638
BspLI	GGNNCC	4 cut(s)	7, 56, 640, 740
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	3 cut(s)	49, 62, 700
BspT104I	TTCGAA	1 cut(s)	727
BspT107I	GGYRCC	1 cut(s)	738
BsrDI	GCAATG	1 cut(s)	570
BssECI	CCNNGG	2 cut(s)	234, 378
BssMI	GATC	3 cut(s)	54, 369, 692
BssT1I	CCWWGG	1 cut(s)	378
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	5 cut(s)	22, 32, 154, 398, 792
BstBAI	YACGTR	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	727
BstC8I	GCNNGC	1 cut(s)	527
BstDEI	CTNAG	1 cut(s)	625
BstEII	GGTNACC	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	831
BstKTI	GATC	3 cut(s)	57, 372, 695
BstMAI	GTCTC	3 cut(s)	143, 258, 564
BstMBI	GATC	3 cut(s)	54, 369, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	770
BstNI	CCWGG	1 cut(s)	286
BstNSI	RCATGY	1 cut(s)	557
BstPI	GGTNACC	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	233, 284
BstV1I	GCAGC	1 cut(s)	785
BstX2I	RGATCY	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	54
BsuI	GTATCC	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	831
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	1 cut(s)	527
CviAII	CATG	3 cut(s)	437, 554, 818
CviJI	RGCY	9 cut(s)	101, 346, 416, 422, 503, 545, 629, 653, 776
CviKI_1	RGCY	9 cut(s)	101, 346, 416, 422, 503, 545, 629, 653, 776
DdeI	CTNAG	1 cut(s)	625
DpnI	GATC	3 cut(s)	56, 371, 694
DpnII	GATC	3 cut(s)	54, 369, 692
Eco130I	CCWWGG	1 cut(s)	378
Eco57I	CTGAAG	2 cut(s)	227, 438
Eco91I	GGTNACC	1 cut(s)	47
EcoO65I	GGTNACC	1 cut(s)	47
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	378
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	2 cut(s)	143, 258
FaeI	CATG	3 cut(s)	440, 557, 821
FatI	CATG	3 cut(s)	436, 553, 817
FbaI	TGATCA	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	742, 774
FokI	GGATG	1 cut(s)	818
Fsp4HI	GCNGC	2 cut(s)	742, 774
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	2 cut(s)	742, 774
GsuI	CTGGAG	1 cut(s)	675
HapII	CCGG	2 cut(s)	52, 234
Hin1II	CATG	3 cut(s)	440, 557, 821
HindIII	AAGCTT	1 cut(s)	420
HinfI	GANTC	3 cut(s)	121, 612, 623
HpaII	CCGG	2 cut(s)	52, 234
HphI	GGTGA	3 cut(s)	95, 364, 447
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	3 cut(s)	271, 283, 535
HpyCH4III	ACNGT	5 cut(s)	22, 32, 154, 398, 792
HpyCH4IV	ACGT	2 cut(s)	63, 387
HpyCH4V	TGCA	5 cut(s)	67, 563, 674, 773, 831
HpyF10VI	GCNNNNNNNGC	1 cut(s)	770
HpyF3I	CTNAG	1 cut(s)	625
HpySE526I	ACGT	2 cut(s)	63, 387
Hsp92II	CATG	3 cut(s)	440, 557, 821
Ksp22I	TGATCA	1 cut(s)	369
Kzo9I	GATC	3 cut(s)	54, 369, 692
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	1 cut(s)	785
LweI	GCATC	2 cut(s)	178, 760
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	2 cut(s)	63, 387
MaeIII	GTNAC	1 cut(s)	47
MalI	GATC	3 cut(s)	56, 371, 694
MboI	GATC	3 cut(s)	54, 369, 692
MboII	GAAGA	4 cut(s)	197, 233, 550, 657
MfeI	CAATTG	3 cut(s)	207, 406, 669
MflI	RGATCY	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	115, 617, 621
MmeI	TCCRAC	1 cut(s)	561
MnlI	CCTC	7 cut(s)	68, 135, 385, 516, 577, 602, 693
MseI	TTAA	1 cut(s)	179
MspA1I	CMGCKG	2 cut(s)	416, 776
MspI	CCGG	2 cut(s)	52, 234
MspR9I	CCNGG	2 cut(s)	235, 286
MunI	CAATTG	3 cut(s)	207, 406, 669
Mva1269I	GAATGC	1 cut(s)	723
MvaI	CCWGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	770
NciI	CCSGG	1 cut(s)	235
NdeII	GATC	3 cut(s)	54, 369, 692
NlaIII	CATG	3 cut(s)	440, 557, 821
NlaIV	GGNNCC	4 cut(s)	7, 56, 640, 740
NspI	RCATGY	1 cut(s)	557
NspV	TTCGAA	1 cut(s)	727
PctI	GAATGC	1 cut(s)	723
PfoI	TCCNGGA	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	743, 775
PleI	GAGTC	3 cut(s)	115, 617, 620
PpsI	GAGTC	3 cut(s)	115, 617, 620
Ppu21I	YACGTR	1 cut(s)	64
Psp1406I	AACGTT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	284
PspEI	GGTNACC	1 cut(s)	47
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	4 cut(s)	7, 56, 640, 740
PsuI	RGATCY	1 cut(s)	54
PvuII	CAGCTG	2 cut(s)	416, 776
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	742, 774
Sau3AI	GATC	3 cut(s)	54, 369, 692
SchI	GAGTC	3 cut(s)	115, 617, 621
ScrFI	CCNGG	2 cut(s)	235, 286
SfaNI	GCATC	2 cut(s)	178, 760
SfuI	TTCGAA	1 cut(s)	727
SsiI	CCGC	3 cut(s)	75, 364, 742
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	233, 284
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	5 cut(s)	22, 32, 154, 398, 792
TaiI	ACGT	2 cut(s)	66, 390
TaqI	TCGA	4 cut(s)	311, 576, 727, 825
TauI	GCSGC	1 cut(s)	744
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	773
TspDTI	ATGAA	2 cut(s)	122, 425
TspGWI	ACGGA	2 cut(s)	617, 824
XapI	RAATTY	1 cut(s)	269
XceI	RCATGY	1 cut(s)	557
XspI	CTAG	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.