Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008577

Physical Location & Seq

Genomic Coordinates Reverse (-)

400729 .. 402883

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g00290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGATGGGTTCAATTCAAACTACCGTCTATTATTGTTGCGTATCAAAGGGTAACCGCATCCTCTATGCATATAGCGGTGGGAATCACGAAATTGAGAATTTGGCTACTCTGTGCTTGGAGAAGGCTCCTCCCTACCATAAATGGTATATTGAGACCTCAGGTAAGAGGACTTATGGGTTTCTAATTGAAGATGGATATGTTTATTTGACTATTGTCGATGAGAGTCTTGCAAGTTCCGGGGTTCTTCAGTTTCTAGAGCATTTGAGGGATGAGTTCAAGAAGTTAGCCAAGAAGGGTTCAAGGGGAAGTTTGTCAAGTATGAACTCTGTTGGCATTCAAGAACAGTTAGTTCCTGTTATCCAACGGTTGATAACCTCCTTAGAAACTGTTTCTCAGGCTGGTAGTAATTGGACAGCTGAAACCCCATCACTTCATGCTGGTCTCTCTCCATCACCAGGTACTGCAAATGGACAAATTGAAGTTGCCAGTTCTACGAAGGCCCCTCTACTTGGGAAGTCTAACAAGCAAGAGAAGAAGAAGGCCAAAGATCATGTTATTGCAATAAGAGACATTGAGTTGGAGGAACATCGGAGATCTGCTGACAGAGGAGTCAATCTAGATTCATCTTCTTTGGATTCTAATAACCATGGAGCAGGTTCTTCAATTGCCTTACAAAAGGATTCAGGCTCCATGAGGAATAGATCGGGCTCTCAGAGCATTCGAAAGAAGTGGTGCCGCCAAGTGCGAATTGTCCTTGCTATTGATGCGGCTGTTTGTGTAGTACTGTTTGTGATTTGGTTATTGATTTGTCACGGCATTGAGTGCATCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006887 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0071944 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin

Protein Analysis

278

Amino Acids

30.41

Weight (kDa)

8.89

Isoelectric Point (pI)

50.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	36 - 97	5.5e-06	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33475 AT1G33475 AT4G10170 AT4G10170
fragaria_vesca	FvH4_2g00290 FvH4_2g00290
malus_domestica	MD05G1005900.v1.1
prunus_persica	Prupe.8G002800_v2.0.a1
pyrus_communis	pycom05g00110
rosa_chinensis	RchiOBHm_Chr6g0249571
rosa_laevigata	RLG00000015561
rosa_multiflora	Rmu_co8370991.1_g000001 Rmu_sc0006936.1_g000007 Rmu_sc0013555.1_g000006
rosa_roxburghii	Rroxscaffold_7G00217540
rosa_rugosa	Rorug05G0493600 Rorug05G0493600 Rorug05G0493700
rosa_samantha	Rh6AG003500 Rh6BG006700 Rh6CG002600 Rh6DG002400
rosa_wichuraiana	Rw6G000390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	608
Acc36I	ACCTGC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	732
AciI	CCGC	4 cut(s)	55, 75, 736, 767
AcsI	RAATTY	1 cut(s)	97
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	2 cut(s)	460, 783
AfiI	CCNNNNNNNGG	2 cut(s)	455, 509
AgsI	TTSAA	8 cut(s)	12, 17, 188, 277, 300, 338, 479, 663
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
Alw26I	GTCTC	3 cut(s)	146, 446, 561
AlwNI	CAGNNNCTG	1 cut(s)	461
AoxI	GGCC	2 cut(s)	498, 540
ApoI	RAATTY	1 cut(s)	97
AspS9I	GGNCC	1 cut(s)	499
AsuC2I	CCSGG	1 cut(s)	238
AsuHPI	GGTGA	1 cut(s)	444
AsuII	TTCGAA	1 cut(s)	721
AxyI	CCTNAGG	1 cut(s)	157
BanI	GGYRCC	1 cut(s)	732
BanII	GRGCYC	1 cut(s)	710
BccI	CCATC	3 cut(s)	185, 433, 457
BceAI	ACGGC	1 cut(s)	829
BciT130I	CCWGG	1 cut(s)	456
BcnI	CCSGG	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	146, 446, 561
BfaI	CTAG	2 cut(s)	254, 617
BfuAI	ACCTGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	2 cut(s)	736, 768
BlsI	GCNGC	2 cut(s)	737, 769
BmcAI	AGTACT	1 cut(s)	783
Bme1390I	CCNGG	2 cut(s)	238, 456
BmgT120I	GGNCC	1 cut(s)	499
BmiI	GGNNCC	4 cut(s)	126, 501, 688, 734
BmrFI	CCNGG	2 cut(s)	238, 456
BmsI	GCATC	2 cut(s)	66, 754
BoxI	GACNNNNGTC	1 cut(s)	212
Bpu14I	TTCGAA	1 cut(s)	721
BpuMI	CCSGG	1 cut(s)	238
BsaI	GGTCTC	2 cut(s)	146, 446
BsaJI	CCNNGG	2 cut(s)	237, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	455, 509
Bse1I	ACTGG	1 cut(s)	486
Bse21I	CCTNAGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	2 cut(s)	237, 646
BseGI	GGATG	3 cut(s)	57, 274, 825
BseLI	CCNNNNNNNGG	2 cut(s)	455, 509
BseMII	CTCAG	3 cut(s)	171, 407, 725
BseNI	ACTGG	1 cut(s)	486
BseRI	GAGGAG	2 cut(s)	117, 621
BshFI	GGCC	2 cut(s)	500, 542
BshNI	GGYRCC	1 cut(s)	732
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	455, 509
BsmAI	GTCTC	3 cut(s)	146, 446, 561
BsmI	GAATGC	2 cut(s)	333, 717
BsnI	GGCC	2 cut(s)	500, 542
Bso31I	GGTCTC	2 cut(s)	146, 446
Bsp119I	TTCGAA	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	710
Bsp143I	GATC	3 cut(s)	547, 593, 701
Bsp19I	CCATGG	1 cut(s)	646
BspACI	CCGC	4 cut(s)	55, 75, 736, 767
BspANI	GGCC	2 cut(s)	500, 542
BspCNI	CTCAG	3 cut(s)	170, 406, 724
BspLI	GGNNCC	4 cut(s)	126, 501, 688, 734
BspMI	ACCTGC	1 cut(s)	644
BspT104I	TTCGAA	1 cut(s)	721
BspT107I	GGYRCC	1 cut(s)	732
BspTNI	GGTCTC	2 cut(s)	146, 446
BsrI	ACTGG	1 cut(s)	486
BssECI	CCNNGG	2 cut(s)	237, 646
BssMI	GATC	3 cut(s)	547, 593, 701
BssT1I	CCWWGG	1 cut(s)	646
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	5 cut(s)	25, 345, 366, 388, 786
BstAPI	GCANNNNNTGC	1 cut(s)	822
BstBI	TTCGAA	1 cut(s)	721
BstDEI	CTNAG	4 cut(s)	157, 379, 393, 711
BstDSI	CCRYGG	1 cut(s)	646
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	3 cut(s)	57, 274, 825
BstKTI	GATC	3 cut(s)	550, 596, 704
BstMAI	GTCTC	3 cut(s)	146, 446, 561
BstMBI	GATC	3 cut(s)	547, 593, 701
BstMWI	GCNNNNNNNGC	3 cut(s)	714, 764, 822
BstNI	CCWGG	1 cut(s)	456
BstPAI	GACNNNNGTC	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	2 cut(s)	236, 454
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
Bsu36I	CCTNAGG	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	500, 542
BtgI	CCRYGG	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	57, 274, 825
BveI	ACCTGC	1 cut(s)	644
CaiI	CAGNNNCTG	1 cut(s)	461
Cfr13I	GGNCC	1 cut(s)	499
CsiI	ACCWGGT	1 cut(s)	454
Csp6I	GTAC	2 cut(s)	459, 782
CviAII	CATG	4 cut(s)	434, 551, 647, 691
CviQI	GTAC	2 cut(s)	459, 782
DdeI	CTNAG	4 cut(s)	157, 379, 393, 711
DpnI	GATC	3 cut(s)	549, 595, 703
DpnII	GATC	3 cut(s)	547, 593, 701
DrdI	GACNNNNNNGTC	1 cut(s)	608
DseDI	GACNNNNNNGTC	1 cut(s)	608
Eco130I	CCWWGG	1 cut(s)	646
Eco24I	GRGCYC	1 cut(s)	710
Eco31I	GGTCTC	2 cut(s)	146, 446
Eco57I	CTGAAG	1 cut(s)	230
Eco81I	CCTNAGG	1 cut(s)	157
Eco91I	GGTNACC	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	499
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	454
EcoT14I	CCWWGG	1 cut(s)	646
EcoT22I	ATGCAT	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	710
ErhI	CCWWGG	1 cut(s)	646
FaeI	CATG	4 cut(s)	437, 554, 650, 694
FatI	CATG	4 cut(s)	433, 550, 646, 690
Fnu4HI	GCNGC	2 cut(s)	736, 768
FokI	GGATG	3 cut(s)	44, 281, 812
FriOI	GRGCYC	1 cut(s)	710
Fsp4HI	GCNGC	2 cut(s)	736, 768
FspBI	CTAG	2 cut(s)	254, 617
GluI	GCNGC	2 cut(s)	736, 768
HaeIII	GGCC	2 cut(s)	500, 542
HapII	CCGG	1 cut(s)	237
Hin1II	CATG	4 cut(s)	437, 554, 650, 694
HinfI	GANTC	6 cut(s)	82, 223, 609, 620, 635, 680
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	444
Hpy188I	TCNGA	2 cut(s)	591, 714
Hpy188III	TCNNGA	5 cut(s)	86, 254, 277, 338, 617
HpyAV	CCTTC	4 cut(s)	115, 286, 490, 532
HpyCH4III	ACNGT	5 cut(s)	25, 345, 366, 388, 786
HpyCH4V	TGCA	5 cut(s)	68, 230, 464, 560, 825
HpyF10VI	GCNNNNNNNGC	3 cut(s)	714, 764, 822
HpyF3I	CTNAG	4 cut(s)	157, 379, 393, 711
Hsp92II	CATG	4 cut(s)	437, 554, 650, 694
Kzo9I	GATC	3 cut(s)	547, 593, 701
LmnI	GCTCC	3 cut(s)	130, 650, 692
LweI	GCATC	2 cut(s)	66, 754
MabI	ACCWGGT	1 cut(s)	454
MaeI	CTAG	2 cut(s)	254, 617
MaeIII	GTNAC	2 cut(s)	50, 809
MalI	GATC	3 cut(s)	549, 595, 703
MboI	GATC	3 cut(s)	547, 593, 701
MboII	GAAGA	6 cut(s)	200, 236, 544, 547, 618, 651
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	1 cut(s)	710
MluCI	AATT	8 cut(s)	12, 90, 97, 183, 406, 474, 663, 747
MlyI	GAGTC	2 cut(s)	232, 618
MmeI	TCCRAC	2 cut(s)	385, 558
Mph1103I	ATGCAT	1 cut(s)	70
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	2 cut(s)	238, 456
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	2 cut(s)	333, 717
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	714, 764, 822
NciI	CCSGG	1 cut(s)	238
NcoI	CCATGG	1 cut(s)	646
NdeII	GATC	3 cut(s)	547, 593, 701
NlaIII	CATG	4 cut(s)	437, 554, 650, 694
NlaIV	GGNNCC	4 cut(s)	126, 501, 688, 734
NmuCI	GTSAC	1 cut(s)	809
NsiI	ATGCAT	1 cut(s)	70
NspV	TTCGAA	1 cut(s)	721
PctI	GAATGC	2 cut(s)	333, 717
PfeI	GAWTC	4 cut(s)	82, 620, 635, 680
PkrI	GCNGC	2 cut(s)	737, 769
PleI	GAGTC	2 cut(s)	231, 617
PpsI	GAGTC	2 cut(s)	231, 617
PshAI	GACNNNNGTC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	454
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	4 cut(s)	126, 501, 688, 734
PspPI	GGNCC	1 cut(s)	499
PstNI	CAGNNNCTG	1 cut(s)	461
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	460, 783
RsaNI	GTAC	2 cut(s)	459, 782
SatI	GCNGC	2 cut(s)	736, 768
Sau3AI	GATC	3 cut(s)	547, 593, 701
Sau96I	GGNCC	1 cut(s)	499
ScaI	AGTACT	1 cut(s)	783
SchI	GAGTC	2 cut(s)	232, 618
ScrFI	CCNGG	2 cut(s)	238, 456
SduI	GDGCHC	1 cut(s)	710
SetI	ASST	6 cut(s)	158, 163, 377, 418, 460, 658
SexAI	ACCWGGT	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	66, 754
SfuI	TTCGAA	1 cut(s)	721
Sse9I	AATT	8 cut(s)	12, 90, 97, 183, 406, 474, 663, 747
SsiI	CCGC	4 cut(s)	55, 75, 736, 767
SspMI	CTAG	2 cut(s)	254, 617
StyD4I	CCNGG	2 cut(s)	236, 454
StyI	CCWWGG	1 cut(s)	646
TaaI	ACNGT	5 cut(s)	25, 345, 366, 388, 786
TaqI	TCGA	2 cut(s)	216, 721
TasI	AATT	8 cut(s)	12, 90, 97, 183, 406, 474, 663, 747
TatI	WGTACW	1 cut(s)	781
TauI	GCSGC	2 cut(s)	738, 770
TfiI	GAWTC	4 cut(s)	82, 620, 635, 680
TseFI	GTSAC	1 cut(s)	809
Tsp45I	GTSAC	1 cut(s)	809
TspDTI	ATGAA	3 cut(s)	335, 422, 612
TspGWI	ACGGA	1 cut(s)	818
XapI	RAATTY	1 cut(s)	97
XbaI	TCTAGA	2 cut(s)	253, 616
XspI	CTAG	2 cut(s)	254, 617
ZrmI	AGTACT	1 cut(s)	783
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.