Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008588

Physical Location & Seq

Genomic Coordinates Reverse (-)

13051157 .. 13055093

Gene Structure 3937 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G35470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAACTCTTCACCACCACCGGCGAATTCCGCCAACGGCGATACAACCAACAACGGCGAGAACGGTCAAGATCTGAACTTAAACTTCTTAGACAAGATTCGTCTCTCCGCTAAACGAGATGCGAAGGAAGACGAAGGAGAAGAATTACCGACGGAGTTGAATACGATCAATAGCGCCGGCGGATTTCTTGTGGTTTCTCCTGATAAGCTTTCCGTGAAGTACACGAATACGAATCTACATGGTCACGATGTTGGTGTTGTTCAAGCTAATAAACCTGCTCCGATCAAGTGTCTTACTTACTACTTTGAGATTTTTGTTAAAGATTCTGGTATTAAAGGACAAATTGCTATTGGTTTTACTAAGGAAAGCTTCAAAATGCGTAGACAACCTGGATGGGAAGTGAACAGCTGTGGATATCATGGGGATGATGGATACCTATATCGTGGACAGGGAAAAGGTGAACCTTTTGGTCCAAAGTTTACAAAAGATGATGCAGTTGGCGGTGGTATAAACTACGCTTCTCAGGAGTTCTTTTTCACTAAAAACGGAACTATTGTTGGGAAAATCCCCAAGGACATAAGAGGTCATCTATTCCCTACTGTAGCTGTACATAGCCAAAATGAGGAGGTATTAGTCAATTTTGGGAAGAAGAAATTTGCTTTCGATATTAAGGGATATGAAGCATCAGAGAGGAATAAGCAACAATTGGCTATTGAAAAAATATCCATACCTCCAAACATTGGTTATGGGCTTGTCAAGACCTACCTGCTACACTATGGGTATGAGGAGACACTCGATGCTTTCAACCTTGCTACTAAAAATACAGTTCCTCCAATTCATATAGATCAAGAAAATGCTATTGACGAGGATGATTCATCCTATGCTTTGAAACAGAGAAAGAATCTTAGACAGCTTGTTAGGAATGGTGAGATTGATACTGCTTTGGCGGAACTCCAAAAGTTGTATCCCCAAATTGTACAGGACGATAAATCTGTAGTTTGCTTCCTCCTTCACTGTCAAAAGTTTATTGAATTAGTTGGAAAACTTGAAGAAGGTGTGAACTATGGCAGACTCGAGTTAGCTAAATTTGTTGGGTTAACTGGATTTCAAGATATAGTCGAGGACTGCTTTGCTTTGCTCGCGTATGAAAAGCCTGAGGAATCATCGGTCTGGTATTTCCTAGAAGACTCACAGAGGGAATTAGTGGCTGATGCGGTGAATGCAGCAATACTATCAACAAATCCAAATAAGAAAGATGTGCAGAGAAGCTGTCACTTGCAATCCCATCTAGAGAAACTGCTAAGACAGTTAACCGTGTGCTGTTTAGAAAGGCGGTCACTGAATGGAGACCAAGGTGAAACATTCCGGCTTCGACATGTTCTTAACAACAACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH SPRY

Protein Analysis

465

Amino Acids

52.09

Weight (kDa)

5.85

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	100 - 216	6.5e-19	SPRY domain
CTLH	PF10607	297 - 440	1.6e-18	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35470 AT1G35470 AT4G09340
fragaria_vesca	FvH4_5g32270
malus_domestica	MD08G1220100.v1.1 MD15G1410300.v1.1
prunus_persica	Prupe.1G552200_v2.0.a1
pyrus_communis	pycom08g19100 pycom15g36520
rosa_chinensis	RchiOBHm_Chr7g0228461 RchiOBHm_Chr7g0228471
rosa_laevigata	RLG00000001364 RLG00000001561
rosa_multiflora	Rmu_sc0004041.1_g000005
rosa_roxburghii	Rroxscaffold_3G00231120
rosa_rugosa	Rorug07G0249700.1 Rorug07G0249800
rosa_samantha	Rh7AG402000 Rh7BG383000 Rh7BG399200 Rh7CG421000 Rh7DG398100
rosa_wichuraiana	Rw7G033420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	283, 774
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccI	GTMKAC	1 cut(s)	382
AccII	CGCG	1 cut(s)	1142
AciI	CCGC	7 cut(s)	30, 108, 180, 501, 947, 1214, 1333
AcsI	RAATTY	3 cut(s)	25, 653, 1085
AfaI	GTAC	3 cut(s)	221, 609, 978
AfiI	CCNNNNNNNGG	2 cut(s)	622, 740
AflIII	ACRYGT	1 cut(s)	1375
AgsI	TTSAA	9 cut(s)	160, 263, 373, 716, 805, 889, 1031, 1049, 1109
AjnI	CCWGG	1 cut(s)	388
AluBI	AGCT	8 cut(s)	208, 266, 369, 408, 605, 913, 1082, 1269
AluI	AGCT	8 cut(s)	208, 266, 369, 408, 605, 913, 1082, 1269
Alw26I	GTCTC	3 cut(s)	107, 782, 1341
Ama87I	CYCGRG	1 cut(s)	1073
ApeKI	GCWGC	1 cut(s)	1223
ApoI	RAATTY	3 cut(s)	25, 653, 1085
AspLEI	GCGC	1 cut(s)	176
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	5 cut(s)	3, 470, 938, 1228, 1367
AvaI	CYCGRG	1 cut(s)	1073
AvaII	GGWCC	1 cut(s)	470
AxyI	CCTNAGG	1 cut(s)	1155
BbsI	GAAGAC	2 cut(s)	135, 1191
BbvI	GCAGC	1 cut(s)	1235
BccI	CCATC	3 cut(s)	387, 422, 1293
BceAI	ACGGC	2 cut(s)	52, 70
BciT130I	CCWGG	1 cut(s)	390
BciVI	GTATCC	2 cut(s)	425, 975
BcoDI	GTCTC	3 cut(s)	107, 782, 1341
BfaI	CTAG	2 cut(s)	1181, 1289
BfmI	CTRYAG	2 cut(s)	600, 993
BfoI	RGCGCY	1 cut(s)	177
BfuAI	ACCTGC	2 cut(s)	283, 774
BfuI	GTATCC	2 cut(s)	425, 975
BglII	AGATCT	1 cut(s)	70
BisI	GCNGC	1 cut(s)	1224
BlsI	GCNGC	1 cut(s)	1225
Bme1390I	CCNGG	1 cut(s)	390
Bme18I	GGWCC	1 cut(s)	470
BmeT110I	CYCGRG	1 cut(s)	1073
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	390
BmsI	GCATC	5 cut(s)	109, 481, 692, 787, 1201
BpiI	GAAGAC	2 cut(s)	135, 1191
BsaI	GGTCTC	1 cut(s)	1341
BsaJI	CCNNGG	2 cut(s)	570, 1351
BsaXI	ACNNNNNCTCC	2 cut(s)	814, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 740
Bse118I	RCCGGY	2 cut(s)	19, 176
Bse1I	ACTGG	1 cut(s)	1105
Bse21I	CCTNAGG	1 cut(s)	1155
BseBI	CCWGG	1 cut(s)	390
BseDI	CCNNGG	2 cut(s)	570, 1351
BseGI	GGATG	4 cut(s)	398, 430, 874, 875
BseLI	CCNNNNNNNGG	2 cut(s)	622, 740
BseMII	CTCAG	2 cut(s)	536, 1146
BseNI	ACTGG	1 cut(s)	1105
BseRI	GAGGAG	2 cut(s)	638, 800
BseXI	GCAGC	1 cut(s)	1235
BsgI	GTGCAG	1 cut(s)	1280
Bsh1236I	CGCG	1 cut(s)	1142
BsiHKCI	CYCGRG	1 cut(s)	1073
BsiSI	CCGG	3 cut(s)	20, 177, 1366
BslI	CCNNNNNNNGG	2 cut(s)	622, 740
BsmAI	GTCTC	3 cut(s)	107, 782, 1341
BsmBI	CGTCTC	1 cut(s)	107
BsmI	GAATGC	1 cut(s)	1225
Bso31I	GGTCTC	1 cut(s)	1341
BsoBI	CYCGRG	1 cut(s)	1073
Bsp1407I	TGTACA	2 cut(s)	607, 976
Bsp143I	GATC	4 cut(s)	70, 165, 282, 844
BspACI	CCGC	7 cut(s)	30, 108, 180, 501, 947, 1214, 1333
BspCNI	CTCAG	2 cut(s)	535, 1147
BspFNI	CGCG	1 cut(s)	1142
BspMI	ACCTGC	2 cut(s)	283, 774
BspTNI	GGTCTC	1 cut(s)	1341
BsrFI	RCCGGY	2 cut(s)	19, 176
BsrGI	TGTACA	2 cut(s)	607, 976
BsrI	ACTGG	1 cut(s)	1105
BssAI	RCCGGY	2 cut(s)	19, 176
BssECI	CCNNGG	2 cut(s)	570, 1351
BssMI	GATC	4 cut(s)	70, 165, 282, 844
BssT1I	CCWWGG	2 cut(s)	570, 1351
Bst2UI	CCWGG	1 cut(s)	390
Bst4CI	ACNGT	6 cut(s)	65, 601, 826, 1016, 1308, 1315
Bst6I	CTCTTC	1 cut(s)	13
BstAUI	TGTACA	2 cut(s)	607, 976
BstC8I	GCNNGC	2 cut(s)	178, 1140
BstDEI	CTNAG	6 cut(s)	88, 360, 522, 905, 1155, 1301
BstF5I	GGATG	4 cut(s)	398, 430, 874, 875
BstFNI	CGCG	1 cut(s)	1142
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	176
BstKTI	GATC	4 cut(s)	73, 168, 285, 847
BstMAI	GTCTC	3 cut(s)	107, 782, 1341
BstMBI	GATC	4 cut(s)	70, 165, 282, 844
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 1139, 1220
BstNI	CCWGG	1 cut(s)	390
BstNSI	RCATGY	1 cut(s)	1379
BstSCI	CCNGG	1 cut(s)	388
BstSFI	CTRYAG	2 cut(s)	600, 993
BstUI	CGCG	1 cut(s)	1142
BstV1I	GCAGC	1 cut(s)	1235
BstV2I	GAAGAC	2 cut(s)	135, 1191
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Bsu36I	CCTNAGG	1 cut(s)	1155
BsuI	GTATCC	2 cut(s)	425, 975
BtsCI	GGATG	4 cut(s)	398, 430, 874, 875
BtsIMutI	CAGTG	2 cut(s)	1012, 1337
BveI	ACCTGC	2 cut(s)	283, 774
Cac8I	GCNNGC	2 cut(s)	178, 1140
CfoI	GCGC	1 cut(s)	176
Cfr10I	RCCGGY	2 cut(s)	19, 176
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	3 cut(s)	220, 608, 977
CviAII	CATG	3 cut(s)	239, 419, 1376
CviQI	GTAC	3 cut(s)	220, 608, 977
DdeI	CTNAG	6 cut(s)	88, 360, 522, 905, 1155, 1301
DpnI	GATC	4 cut(s)	72, 167, 284, 846
DpnII	GATC	4 cut(s)	70, 165, 282, 844
Eam1104I	CTCTTC	1 cut(s)	13
EarI	CTCTTC	1 cut(s)	13
EciI	GGCGGA	3 cut(s)	19, 195, 962
Eco130I	CCWWGG	2 cut(s)	570, 1351
Eco31I	GGTCTC	1 cut(s)	1341
Eco32I	GATATC	1 cut(s)	416
Eco47I	GGWCC	1 cut(s)	470
Eco81I	CCTNAGG	1 cut(s)	1155
Eco88I	CYCGRG	1 cut(s)	1073
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	1 cut(s)	388
EcoRV	GATATC	1 cut(s)	416
EcoT14I	CCWWGG	2 cut(s)	570, 1351
ErhI	CCWWGG	2 cut(s)	570, 1351
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	3 cut(s)	242, 422, 1379
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	3 cut(s)	238, 418, 1375
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	1224
FokI	GGATG	4 cut(s)	405, 437, 862, 881
Fsp4HI	GCNGC	1 cut(s)	1224
FspBI	CTAG	2 cut(s)	1181, 1289
GlaI	GCGC	1 cut(s)	175
GluI	GCNGC	1 cut(s)	1224
HaeII	RGCGCY	1 cut(s)	177
HapII	CCGG	3 cut(s)	20, 177, 1366
HhaI	GCGC	1 cut(s)	176
Hin1II	CATG	3 cut(s)	242, 422, 1379
Hin6I	GCGC	1 cut(s)	174
HinP1I	GCGC	1 cut(s)	174
HincII	GTYRAC	2 cut(s)	1098, 1311
HindII	GTYRAC	2 cut(s)	1098, 1311
HindIII	AAGCTT	2 cut(s)	206, 367
HinfI	GANTC	8 cut(s)	97, 232, 323, 872, 901, 1071, 1160, 1187
HpaI	GTTAAC	2 cut(s)	1098, 1311
HpaII	CCGG	3 cut(s)	20, 177, 1366
HphI	GGTGA	5 cut(s)	3, 470, 938, 1228, 1367
Hpy166II	GTNNAC	9 cut(s)	222, 383, 403, 446, 461, 480, 1060, 1098, 1311
Hpy188I	TCNGA	3 cut(s)	75, 282, 688
Hpy188III	TCNNGA	8 cut(s)	68, 200, 245, 524, 757, 848, 1109, 1289
Hpy8I	GTNNAC	9 cut(s)	222, 383, 403, 446, 461, 480, 1060, 1098, 1311
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	4 cut(s)	118, 128, 1019, 1046
HpyCH4III	ACNGT	6 cut(s)	65, 601, 826, 1016, 1308, 1315
HpyCH4V	TGCA	4 cut(s)	494, 1223, 1261, 1279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 1139, 1220
HpyF3I	CTNAG	6 cut(s)	88, 360, 522, 905, 1155, 1301
Hsp92II	CATG	3 cut(s)	242, 422, 1379
HspAI	GCGC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
KspAI	GTTAAC	2 cut(s)	1098, 1311
Kzo9I	GATC	4 cut(s)	70, 165, 282, 844
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	1235
LweI	GCATC	5 cut(s)	109, 481, 692, 787, 1201
MaeI	CTAG	2 cut(s)	1181, 1289
MaeIII	GTNAC	3 cut(s)	242, 1271, 1335
MalI	GATC	4 cut(s)	72, 167, 284, 846
MboI	GATC	4 cut(s)	70, 165, 282, 844
MboII	GAAGA	6 cut(s)	140, 152, 658, 661, 1061, 1196
MfeI	CAATTG	1 cut(s)	704
MflI	RGATCY	1 cut(s)	70
MlyI	GAGTC	2 cut(s)	1065, 1181
MmeI	TCCRAC	1 cut(s)	1018
MreI	CGCCGGCG	1 cut(s)	176
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	7 cut(s)	80, 318, 333, 669, 1097, 1310, 1383
MslI	CAYNNNNRTG	1 cut(s)	423
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	3 cut(s)	20, 177, 1366
MspR9I	CCNGG	1 cut(s)	390
MunI	CAATTG	1 cut(s)	704
Mva1269I	GAATGC	1 cut(s)	1225
MvaI	CCWGG	1 cut(s)	390
MvnI	CGCG	1 cut(s)	1142
MwoI	GCNNNNNNNGC	3 cut(s)	29, 1139, 1220
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	4 cut(s)	70, 165, 282, 844
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	242, 422, 1379
NmuCI	GTSAC	3 cut(s)	242, 1271, 1335
NspI	RCATGY	1 cut(s)	1379
PaeR7I	CTCGAG	1 cut(s)	1073
PciI	ACATGT	1 cut(s)	1375
PctI	GAATGC	1 cut(s)	1225
PdiI	GCCGGC	1 cut(s)	178
PfeI	GAWTC	6 cut(s)	97, 232, 323, 872, 901, 1160
PflMI	CCANNNNNTGG	1 cut(s)	740
PkrI	GCNGC	1 cut(s)	1225
PleI	GAGTC	2 cut(s)	1065, 1181
PpsI	GAGTC	2 cut(s)	1065, 1181
PscI	ACATGT	1 cut(s)	1375
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspPI	GGNCC	1 cut(s)	470
PspXI	VCTCGAGB	1 cut(s)	1073
PsuI	RGATCY	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	408
RsaI	GTAC	3 cut(s)	221, 609, 978
RsaNI	GTAC	3 cut(s)	220, 608, 977
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	7 cut(s)	80, 318, 333, 669, 1097, 1310, 1383
SatI	GCNGC	1 cut(s)	1224
Sau3AI	GATC	4 cut(s)	70, 165, 282, 844
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	1065, 1181
ScrFI	CCNGG	1 cut(s)	390
SfaNI	GCATC	5 cut(s)	109, 481, 692, 787, 1201
SfcI	CTRYAG	2 cut(s)	600, 993
Sfr274I	CTCGAG	1 cut(s)	1073
SgrAI	CRCCGGYG	2 cut(s)	19, 176
SinI	GGWCC	1 cut(s)	470
SlaI	CTCGAG	1 cut(s)	1073
SmiMI	CAYNNNNRTG	1 cut(s)	423
SmlI	CTYRAG	1 cut(s)	1073
SmoI	CTYRAG	1 cut(s)	1073
SsiI	CCGC	7 cut(s)	30, 108, 180, 501, 947, 1214, 1333
SspMI	CTAG	2 cut(s)	1181, 1289
StyD4I	CCNGG	1 cut(s)	388
StyI	CCWWGG	2 cut(s)	570, 1351
TaaI	ACNGT	6 cut(s)	65, 601, 826, 1016, 1308, 1315
TaqI	TCGA	5 cut(s)	663, 795, 1074, 1119, 1372
TaqII	GACCGA	1 cut(s)	1156
TatI	WGTACW	3 cut(s)	219, 607, 976
TfiI	GAWTC	6 cut(s)	97, 232, 323, 872, 901, 1160
Tru1I	TTAA	7 cut(s)	80, 318, 333, 669, 1097, 1310, 1383
Tru9I	TTAA	7 cut(s)	80, 318, 333, 669, 1097, 1310, 1383
TscAI	CASTG	2 cut(s)	1019, 1344
TseFI	GTSAC	3 cut(s)	242, 1271, 1335
TseI	GCWGC	1 cut(s)	1223
Tsp45I	GTSAC	3 cut(s)	242, 1271, 1335
TspDTI	ATGAA	5 cut(s)	17, 693, 827, 864, 1161
TspGWI	ACGGA	3 cut(s)	167, 202, 561
TspRI	CASTG	2 cut(s)	1019, 1344
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	3 cut(s)	25, 653, 1085
XbaI	TCTAGA	1 cut(s)	1288
XceI	RCATGY	1 cut(s)	1379
XhoI	CTCGAG	1 cut(s)	1073
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	2 cut(s)	1181, 1289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.