Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008588

Physical Location & Seq

Genomic Coordinates Reverse (-)

44284870 .. 44287582

Gene Structure 2713 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG399200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGGGATGATGGATTTCTGTATCTTGGACAAGGAAAGGGTGAGTCTTTTGGCCCAACCTACACATCTGATGATAGAGTTGGAAGGTGGCATCAATTATGCATCACAGGAGTTCTTTTTCACTAAAAATGGAACTGTGCCCAAGGACATCAAGGGTCCTTTATATCCTACCATTGCTGTACACAGCCAAAATGAGGAGGTGCAAGTCAACTTTGGGCAACAACCTTTTGCTTTTGATCTTAAGGAATTTGAAGCACAAGAGAGGATGAAGCAGCAAATGATGATTGAAAAGATTTCGTTGCCGGCAAATGTTTGTCATGGAATTATGCGCTCCTACTTACTACATTATGGCTATGAAGATACGCTCAATTCATTTGACATGGCTAGTAAGAGTACTGTTCCCTCTGTATACACAGCTCAAAAAAATGGCTTTGATGAGCAGGATAGTAGATGCCTTTTGTCCTACACTCTCCAGTATGTTTTGTTTGGTGCTTACAAAAGTTGTTCAGTCCTTGAAGATGCTGCATCACTACATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH SPRY

Protein Analysis

179

Amino Acids

20.29

Weight (kDa)

5.04

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35470 AT1G35470 AT4G09340
fragaria_vesca	FvH4_5g32270
malus_domestica	MD08G1220100.v1.1 MD15G1410300.v1.1
prunus_persica	Prupe.1G552200_v2.0.a1
pyrus_communis	pycom08g19100 pycom15g36520
rosa_chinensis	RchiOBHm_Chr7g0228461 RchiOBHm_Chr7g0228471
rosa_laevigata	RLG00000001364 RLG00000001561
rosa_multiflora	Rmu_sc0004041.1_g000005
rosa_roxburghii	Rroxscaffold_3G00231120
rosa_rugosa	Rorug07G0249700.1 Rorug07G0249800
rosa_samantha	Rh7AG402000 Rh7BG383000 Rh7BG399200 Rh7CG421000 Rh7DG398100
rosa_wichuraiana	Rw7G033420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	2 cut(s)	180, 394
AfiI	CCNNNNNNNGG	1 cut(s)	193
AflII	CTTAAG	1 cut(s)	239
AgsI	TTSAA	3 cut(s)	251, 287, 515
AluBI	AGCT	1 cut(s)	416
AluI	AGCT	1 cut(s)	416
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	271, 521
ApoI	RAATTY	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	52, 155
AsuHPI	GGTGA	1 cut(s)	52
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	283, 508
BccI	CCATC	1 cut(s)	4
BfaI	CTAG	1 cut(s)	384
BfrI	CTTAAG	1 cut(s)	239
BisI	GCNGC	2 cut(s)	272, 522
BlsI	GCNGC	2 cut(s)	273, 523
BmcAI	AGTACT	1 cut(s)	394
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	2 cut(s)	52, 155
BmiI	GGNNCC	1 cut(s)	156
BmsI	GCATC	5 cut(s)	99, 110, 440, 508, 533
BpmI	CTGGAG	1 cut(s)	455
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	193
Bse118I	RCCGGY	1 cut(s)	301
Bse1I	ACTGG	1 cut(s)	472
Bse3DI	GCAATG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	12, 270
BseLI	CCNNNNNNNGG	1 cut(s)	193
BseMI	GCAATG	1 cut(s)	171
BseNI	ACTGG	1 cut(s)	472
BseRI	GAGGAG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	283, 508
BshFI	GGCC	1 cut(s)	53
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	193
BsnI	GGCC	1 cut(s)	53
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	53
BspLI	GGNNCC	1 cut(s)	156
BspTI	CTTAAG	1 cut(s)	239
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	301
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	1 cut(s)	235
BssNAI	GTATAC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	141
Bst1107I	GTATAC	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	136, 397
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	12, 270
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	536
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	283, 508
BstZ17I	GTATAC	1 cut(s)	409
BsuRI	GGCC	1 cut(s)	53
BtsCI	GGATG	2 cut(s)	12, 270
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	330
Cfr10I	RCCGGY	1 cut(s)	301
Cfr13I	GGNCC	2 cut(s)	52, 155
Csp6I	GTAC	2 cut(s)	179, 393
CviAII	CATG	3 cut(s)	317, 379, 533
CviJI	RGCY	6 cut(s)	53, 186, 351, 383, 416, 429
CviKI_1	RGCY	6 cut(s)	53, 186, 351, 383, 416, 429
CviQI	GTAC	2 cut(s)	179, 393
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	155
EcoT14I	CCWWGG	1 cut(s)	141
EcoT22I	ATGCAT	2 cut(s)	103, 538
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	3 cut(s)	320, 382, 536
FatI	CATG	3 cut(s)	316, 378, 532
FblI	GTMKAC	1 cut(s)	408
Fnu4HI	GCNGC	2 cut(s)	272, 522
FokI	GGATG	2 cut(s)	19, 277
Fsp4HI	GCNGC	2 cut(s)	272, 522
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	2 cut(s)	272, 522
GsuI	CTGGAG	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	53
HapII	CCGG	1 cut(s)	302
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	320, 382, 536
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	208
HindII	GTYRAC	1 cut(s)	208
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	1 cut(s)	52
Hpy166II	GTNNAC	3 cut(s)	181, 208, 409
Hpy188I	TCNGA	1 cut(s)	69
Hpy8I	GTNNAC	3 cut(s)	181, 208, 409
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	2 cut(s)	136, 397
HpyCH4V	TGCA	4 cut(s)	101, 202, 524, 536
Hsp92II	CATG	3 cut(s)	320, 382, 536
HspAI	GCGC	1 cut(s)	328
KroI	GCCGGC	1 cut(s)	301
KroNI	GCCGGC	1 cut(s)	303
Kzo9I	GATC	1 cut(s)	235
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	4 cut(s)	92, 315, 425, 485
Lsp1109I	GCAGC	2 cut(s)	283, 508
LweI	GCATC	5 cut(s)	99, 110, 440, 508, 533
MaeI	CTAG	1 cut(s)	384
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	368, 527
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	4 cut(s)	94, 245, 321, 367
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	4 cut(s)	187, 190, 255, 412
Mph1103I	ATGCAT	2 cut(s)	103, 538
MroNI	GCCGGC	1 cut(s)	301
MseI	TTAA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	302
NaeI	GCCGGC	1 cut(s)	303
NdeII	GATC	1 cut(s)	235
NgoMIV	GCCGGC	1 cut(s)	301
NlaIII	CATG	3 cut(s)	320, 382, 536
NlaIV	GGNNCC	1 cut(s)	156
NsiI	ATGCAT	2 cut(s)	103, 538
NspI	RCATGY	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	273, 523
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	2 cut(s)	52, 155
PspPPI	RGGWCCY	1 cut(s)	155
RsaI	GTAC	2 cut(s)	180, 394
RsaNI	GTAC	2 cut(s)	179, 393
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	272, 522
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	2 cut(s)	52, 155
ScaI	AGTACT	1 cut(s)	394
SchI	GAGTC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	141
SetI	ASST	5 cut(s)	61, 88, 201, 226, 418
SfaNI	GCATC	5 cut(s)	99, 110, 440, 508, 533
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
Sse9I	AATT	4 cut(s)	94, 245, 321, 367
SspMI	CTAG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	136, 397
TasI	AATT	4 cut(s)	94, 245, 321, 367
TatI	WGTACW	2 cut(s)	178, 392
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TseI	GCWGC	2 cut(s)	271, 521
TspDTI	ATGAA	3 cut(s)	281, 360, 369
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	155
XapI	RAATTY	1 cut(s)	245
XceI	RCATGY	1 cut(s)	536
XmiI	GTMKAC	1 cut(s)	408
XspI	CTAG	1 cut(s)	384
ZrmI	AGTACT	1 cut(s)	394
Zsp2I	ATGCAT	2 cut(s)	103, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.