Prupe.1G552200_v2.0.a1

Ran-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
45126611 .. 45134080
7470 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G552200.1

Sequence Viewer

Length: 1383 bp
ATGAGCAACAACACCAACAGTACCAACGGCCACAGCGATCGAGATCTGGGCCTGTGGTTCCTAGAGCAGTCGCGGCTCGGCTCGGCTCGTGTGCCGACGGACATGGACGAGGACGAGGAGGCTCCTACAGAGCTCAATACCATCAATAGCTCTGGAGGCTTCCTCGTGGTGTCGCCCGATAAGCTCTCGGCCAAGTACACCAACGTCAACCTTCATGGACACGACGTTGGTGTAGTTCAGGCTAACAAGCCAGCTCCGGTCAAGCGGCTTGTCTACTACTTCGAGATTTATGTCAAGGACGCTGGGACCAAGGGTCAGATTGCCATTGGATTTACTTCTGAGAGCTTCAAGATGCGGAGGCAGCCCGGGTGGGAGGCAAATAGTTGTGGCTATCATGGGGATGATGGACTACTTTATCGTGGACATGGAAAAGGAGAGGCTTTTGGCCCAACCTACACCTCTGGTGATATAGTTGGAGGTGGTATCAATTATGCTTCACAGGAGTTCTTTTTCACTAAAAATGGTGCTGTAGTGGGGACAGTGCCCAAGGATATGAAGGGTCCCTTATTTCCTACAATTGCTGTACACAGCCAAAATGAGGAGGTGAATGTCAACTTTGGGCAGCAACCTTTTGCTTTTGATCTAAAGGAATTTGAAGCGCAAGAGAGGATGAAGCAACAAAGGATGATTGAAAAATTTTCATTGCCAACTGTTAGTCATGGAATTGTACGCTCCTACTTACTACATTATGGCTATGAAGATACGCTCAATTCATTTGACATGGCTAGTAAAACTACTGTTCCTCCTGTACATATAGCTCAAGAAAATGGTTTTGATGAGCAGGACGTTGTGTTTGCACTAACTGAGAGAAAGACTCTTAGACAGCTTATCAGGAATGGGGAGATCGACTCTGCACTTGGTAAACTCCGGGAATGGTATCCCCAAATTGTTCAGGATGATAAATCAGCTACTTGCTTTCTACTCCACTGTCAAAAGTTTATCGAATTGGTCCGGGTCGGAGCACTTGAGGAGGCTGTGAAATATGGAAGAATGGAATTAGCAAAGTTCTTTGGCCTGCCGGTGTTTGAGGACCTAGTTCAGGATTGTGTTGCTCTGCTGGCATACGAACGGCCACAAGAGTCCTCAGTTGGATATCTGCTTGAAGAGTCGCAGCGTGAAGTTGTGGCAGACACAGTTAATGCAATGATCTTGTCTACAAATCCAAACCTGAAAGATTCACAAAGTTGCTTGCATTCATATCTTGAGAGGTTACTCAGGCAACTCACTGCTTGCTGTTTGGAAAGAAGGTTGTTGAGTGGGGATCAAGGTGAAGCTTTCCATCTGCACAGAGTACTTAACAGTTGTAAGAAGGCTAGGTGCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.49

Weight (kDa)

5.61

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 273, 1214
AccII CGCG 1 cut(s) 73
AciI CCGC 3 cut(s) 73, 265, 355
AclWI GGATC 1 cut(s) 1329
AcoI YGGCCR 3 cut(s) 28, 189, 1130
AcsI RAATTY 2 cut(s) 650, 695
AfaI GTAC 6 cut(s) 22, 197, 585, 729, 810, 1353
AfiI CCNNNNNNNGG 2 cut(s) 598, 1099
AgsI TTSAA 4 cut(s) 349, 656, 692, 1163
AhdI GACNNNNNGTC 1 cut(s) 312
AluBI AGCT 9 cut(s) 133, 150, 184, 254, 345, 818, 886, 968, 1334
AluI AGCT 9 cut(s) 133, 150, 184, 254, 345, 818, 886, 968, 1334
Alw21I GWGCWC 2 cut(s) 135, 1024
AlwI GGATC 1 cut(s) 1329
Ama87I CYCGRG 1 cut(s) 365
AoxI GGCC 6 cut(s) 28, 49, 189, 445, 1072, 1130
ApeKI GCWGC 3 cut(s) 361, 622, 1171
ApoI RAATTY 2 cut(s) 650, 695
ArsI GACNNNNNNTTYG 2 cut(s) 836, 868
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 6 cut(s) 49, 306, 446, 560, 1009, 1090
AsuC2I CCSGG 4 cut(s) 366, 367, 929, 1013
AsuHPI GGTGA 3 cut(s) 476, 616, 1340
AvaI CYCGRG 1 cut(s) 365
AvaII GGWCC 4 cut(s) 306, 560, 1009, 1090
BaeGI GKGCMC 1 cut(s) 546
BanII GRGCYC 1 cut(s) 135
BauI CACGAG 2 cut(s) 87, 164
Bbv12I GWGCWC 2 cut(s) 135, 1024
BbvI GCAGC 3 cut(s) 373, 634, 1183
BccI CCATC 3 cut(s) 149, 398, 1347
BceAI ACGGC 2 cut(s) 43, 1145
BciVI GTATCC 1 cut(s) 948
BcnI CCSGG 4 cut(s) 366, 367, 929, 1013
BfaI CTAG 5 cut(s) 62, 786, 1094, 1374, 1381
BfmI CTRYAG 2 cut(s) 126, 528
BfuI GTATCC 1 cut(s) 948
BglII AGATCT 1 cut(s) 43
BisI GCNGC 5 cut(s) 74, 266, 362, 623, 1172
BlsI GCNGC 5 cut(s) 75, 267, 363, 624, 1173
BmcAI AGTACT 1 cut(s) 1353
Bme1390I CCNGG 4 cut(s) 366, 367, 929, 1013
Bme18I GGWCC 4 cut(s) 306, 560, 1009, 1090
BmeRI GACNNNNNGTC 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 365
BmgT120I GGNCC 6 cut(s) 49, 306, 446, 560, 1009, 1090
BmiI GGNNCC 5 cut(s) 59, 123, 307, 561, 562
BmrFI CCNGG 4 cut(s) 366, 367, 929, 1013
BmsI GCATC 1 cut(s) 342
BplI GAGNNNNNCTC 6 cut(s) 147, 179, 859, 891, 893, 925
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 3 cut(s) 804, 1046, 1283
BpuMI CCSGG 4 cut(s) 366, 367, 929, 1013
BsaBI GATNNNNATC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 309, 365, 546
BsaWI WCCGGW 1 cut(s) 256
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 2 cut(s) 598, 1099
Bse118I RCCGGY 1 cut(s) 1078
Bse3DI GCAATG 2 cut(s) 701, 1209
Bse8I GATNNNNATC 1 cut(s) 42
BseDI CCNNGG 3 cut(s) 309, 365, 546
BseGI GGATG 4 cut(s) 406, 675, 690, 961
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 598, 1099
BseMI GCAATG 2 cut(s) 701, 1209
BseMII CTCAG 4 cut(s) 330, 855, 1158, 1288
BseRI GAGGAG 3 cut(s) 131, 614, 1043
BseSI GKGCMC 1 cut(s) 546
BseXI GCAGC 3 cut(s) 373, 634, 1183
BseYI CCCAGC 1 cut(s) 302
BsgI GTGCAG 2 cut(s) 897, 1328
Bsh1236I CGCG 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 6 cut(s) 30, 51, 191, 447, 1074, 1132
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 2 cut(s) 135, 1024
BsiHKCI CYCGRG 1 cut(s) 365
BsiSI CCGG 5 cut(s) 257, 366, 928, 1012, 1079
BslFI GGGAC 3 cut(s) 319, 546, 550
BslI CCNNNNNNNGG 2 cut(s) 598, 1099
BsmFI GGGAC 3 cut(s) 319, 546, 550
BsmI GAATGC 1 cut(s) 1252
BsnI GGCC 6 cut(s) 30, 51, 191, 447, 1074, 1132
BsoBI CYCGRG 1 cut(s) 365
Bsp1286I GDGCHC 3 cut(s) 135, 546, 1024
Bsp1407I TGTACA 2 cut(s) 583, 808
Bsp143I GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
BspACI CCGC 3 cut(s) 73, 265, 355
BspANI GGCC 6 cut(s) 30, 51, 191, 447, 1074, 1132
BspCNI CTCAG 4 cut(s) 331, 856, 1157, 1287
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 5 cut(s) 59, 123, 307, 561, 562
BspPI GGATC 1 cut(s) 1329
BsrDI GCAATG 2 cut(s) 701, 1209
BsrFI RCCGGY 1 cut(s) 1078
BsrGI TGTACA 2 cut(s) 583, 808
BssAI RCCGGY 1 cut(s) 1078
BssECI CCNNGG 3 cut(s) 309, 365, 546
BssMI GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
BssSI CACGAG 2 cut(s) 87, 164
BssT1I CCWWGG 2 cut(s) 309, 546
Bst2BI CACGAG 2 cut(s) 87, 164
Bst4CI ACNGT 7 cut(s) 20, 541, 712, 799, 989, 1195, 1361
Bst6I CTCTTC 1 cut(s) 1158
BstAUI TGTACA 2 cut(s) 583, 808
BstC8I GCNNGC 5 cut(s) 252, 1076, 1119, 1250, 1291
BstDEI CTNAG 5 cut(s) 339, 864, 878, 1144, 1274
BstENI CCTNNNNNAGG 1 cut(s) 1097
BstF5I GGATG 4 cut(s) 406, 675, 690, 961
BstFNI CGCG 1 cut(s) 73
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 6 cut(s) 40, 46, 643, 906, 1209, 1324
BstMBI GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 5 cut(s) 73, 156, 181, 361, 1118
BstSCI CCNGG 4 cut(s) 364, 365, 927, 1011
BstSFI CTRYAG 2 cut(s) 126, 528
BstSLI GKGCMC 1 cut(s) 546
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 3 cut(s) 373, 634, 1183
BstX2I RGATCY 1 cut(s) 43
BstYI RGATCY 1 cut(s) 43
BsuI GTATCC 1 cut(s) 948
BsuRI GGCC 6 cut(s) 30, 51, 191, 447, 1074, 1132
BtsCI GGATG 4 cut(s) 406, 675, 690, 961
BtsI GCAGTG 1 cut(s) 1284
BtsIMutI CAGTG 3 cut(s) 546, 985, 1284
Cac8I GCNNGC 5 cut(s) 252, 1076, 1119, 1250, 1291
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 1078
Cfr13I GGNCC 6 cut(s) 49, 306, 446, 560, 1009, 1090
Cfr9I CCCGGG 1 cut(s) 365
CseI GACGC 1 cut(s) 308
Csp6I GTAC 6 cut(s) 21, 196, 584, 728, 809, 1352
CviAII CATG 6 cut(s) 103, 215, 395, 425, 719, 781
CviQI GTAC 6 cut(s) 21, 196, 584, 728, 809, 1352
DdeI CTNAG 5 cut(s) 339, 864, 878, 1144, 1274
DpnI GATC 6 cut(s) 39, 45, 642, 905, 1208, 1323
DpnII GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
DriI GACNNNNNGTC 1 cut(s) 312
EaeI YGGCCR 3 cut(s) 28, 189, 1130
Eam1104I CTCTTC 1 cut(s) 1158
Eam1105I GACNNNNNGTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 1158
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 309, 546
Eco24I GRGCYC 1 cut(s) 135
Eco32I GATATC 1 cut(s) 1154
Eco47I GGWCC 4 cut(s) 306, 560, 1009, 1090
Eco53kI GAGCTC 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 365
EcoICRI GAGCTC 1 cut(s) 133
EcoNI CCTNNNNNAGG 1 cut(s) 1097
EcoO109I RGGNCCY 2 cut(s) 560, 1090
EcoRV GATATC 1 cut(s) 1154
EcoT14I CCWWGG 2 cut(s) 309, 546
EcoT38I GRGCYC 1 cut(s) 135
ErhI CCWWGG 2 cut(s) 309, 546
FaeI CATG 6 cut(s) 106, 218, 398, 428, 722, 784
FalI AAGNNNNNCTT 2 cut(s) 548, 580
FaqI GGGAC 3 cut(s) 319, 546, 550
FatI CATG 6 cut(s) 102, 214, 394, 424, 718, 780
FblI GTMKAC 2 cut(s) 273, 1214
Fnu4HI GCNGC 5 cut(s) 74, 266, 362, 623, 1172
FokI GGATG 4 cut(s) 413, 682, 697, 968
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 5 cut(s) 74, 266, 362, 623, 1172
FspBI CTAG 5 cut(s) 62, 786, 1094, 1374, 1381
GlaI GCGC 1 cut(s) 660
GluI GCNGC 5 cut(s) 74, 266, 362, 623, 1172
GsaI CCCAGC 1 cut(s) 306
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 6 cut(s) 30, 51, 191, 447, 1074, 1132
HapII CCGG 5 cut(s) 257, 366, 928, 1012, 1079
HgaI GACGC 1 cut(s) 308
HhaI GCGC 1 cut(s) 661
Hin1II CATG 6 cut(s) 106, 218, 398, 428, 722, 784
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 2 cut(s) 208, 613
HindII GTYRAC 2 cut(s) 208, 613
HindIII AAGCTT 1 cut(s) 1332
HinfI GANTC 5 cut(s) 874, 908, 1139, 1166, 1235
HpaII CCGG 5 cut(s) 257, 366, 928, 1012, 1079
HphI GGTGA 3 cut(s) 476, 616, 1340
Hpy166II GTNNAC 8 cut(s) 198, 208, 274, 422, 586, 613, 923, 1215
Hpy188I TCNGA 3 cut(s) 318, 340, 1019
Hpy188III TCNNGA 9 cut(s) 41, 153, 283, 349, 821, 892, 953, 1100, 1262
Hpy8I GTNNAC 8 cut(s) 198, 208, 274, 422, 586, 613, 923, 1215
Hpy99I CGWCG 2 cut(s) 100, 227
HpyAV CCTTC 4 cut(s) 221, 550, 1299, 1363
HpyCH4III ACNGT 7 cut(s) 20, 541, 712, 799, 989, 1195, 1361
HpyCH4IV ACGT 3 cut(s) 204, 225, 846
HpyCH4V TGCA 5 cut(s) 857, 914, 1202, 1252, 1345
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 156, 181, 361, 1118
HpyF3I CTNAG 5 cut(s) 339, 864, 878, 1144, 1274
HpySE526I ACGT 3 cut(s) 204, 225, 846
Hsp92II CATG 6 cut(s) 106, 218, 398, 428, 722, 784
HspAI GCGC 1 cut(s) 659
KflI GGGWCCC 1 cut(s) 560
Kzo9I GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
LmnI GCTCC 4 cut(s) 127, 259, 737, 1019
Lsp1109I GCAGC 3 cut(s) 373, 634, 1183
LweI GCATC 1 cut(s) 342
MaeI CTAG 5 cut(s) 62, 786, 1094, 1374, 1381
MaeII ACGT 3 cut(s) 204, 225, 846
MaeIII GTNAC 1 cut(s) 1269
MalI GATC 6 cut(s) 39, 45, 642, 905, 1208, 1323
MboI GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
MboII GAAGA 3 cut(s) 770, 1059, 1175
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 43
MhlI GDGCHC 3 cut(s) 135, 546, 1024
MluCI AATT 9 cut(s) 487, 576, 650, 695, 723, 769, 945, 1004, 1055
MlyI GAGTC 4 cut(s) 868, 902, 1148, 1175
MmeI TCCRAC 3 cut(s) 454, 997, 1129
MseI TTAA 2 cut(s) 1197, 1356
MslI CAYNNNNRTG 1 cut(s) 399
MspI CCGG 5 cut(s) 257, 366, 928, 1012, 1079
MspR9I CCNGG 4 cut(s) 366, 367, 929, 1013
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 1252
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 5 cut(s) 73, 156, 181, 361, 1118
NciI CCSGG 4 cut(s) 366, 367, 929, 1013
NdeII GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
NlaIII CATG 6 cut(s) 106, 218, 398, 428, 722, 784
NlaIV GGNNCC 5 cut(s) 59, 123, 307, 561, 562
NmeAIII GCCGAG 3 cut(s) 57, 62, 167
PcsI WCGNNNNNNNCGW 1 cut(s) 33
PctI GAATGC 1 cut(s) 1252
PfeI GAWTC 1 cut(s) 1235
PfoI TCCNGGA 1 cut(s) 927
PkrI GCNGC 5 cut(s) 75, 267, 363, 624, 1173
Ple19I CGATCG 1 cut(s) 40
PleI GAGTC 4 cut(s) 868, 902, 1147, 1174
PpsI GAGTC 4 cut(s) 868, 902, 1147, 1174
PpuMI RGGWCCY 2 cut(s) 560, 1090
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 2 cut(s) 560, 1090
PspFI CCCAGC 1 cut(s) 302
PspN4I GGNNCC 5 cut(s) 59, 123, 307, 561, 562
PspPI GGNCC 6 cut(s) 49, 306, 446, 560, 1009, 1090
PspPPI RGGWCCY 2 cut(s) 560, 1090
PsuI RGATCY 1 cut(s) 43
PvuI CGATCG 1 cut(s) 40
RsaI GTAC 6 cut(s) 22, 197, 585, 729, 810, 1353
RsaNI GTAC 6 cut(s) 21, 196, 584, 728, 809, 1352
RseI CAYNNNNRTG 1 cut(s) 399
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 2 cut(s) 1197, 1356
SatI GCNGC 5 cut(s) 74, 266, 362, 623, 1172
Sau3AI GATC 6 cut(s) 37, 43, 640, 903, 1206, 1321
Sau96I GGNCC 6 cut(s) 49, 306, 446, 560, 1009, 1090
ScaI AGTACT 1 cut(s) 1353
SchI GAGTC 4 cut(s) 868, 902, 1148, 1175
ScrFI CCNGG 4 cut(s) 366, 367, 929, 1013
SduI GDGCHC 3 cut(s) 135, 546, 1024
SfaNI GCATC 1 cut(s) 342
SfcI CTRYAG 2 cut(s) 126, 528
SinI GGWCC 4 cut(s) 306, 560, 1009, 1090
SmaI CCCGGG 1 cut(s) 367
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 3 cut(s) 819, 1025, 1262
SmoI CTYRAG 3 cut(s) 819, 1025, 1262
Sse9I AATT 9 cut(s) 487, 576, 650, 695, 723, 769, 945, 1004, 1055
SsiI CCGC 3 cut(s) 73, 265, 355
SspMI CTAG 5 cut(s) 62, 786, 1094, 1374, 1381
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 4 cut(s) 364, 365, 927, 1011
StyI CCWWGG 2 cut(s) 309, 546
TaaI ACNGT 7 cut(s) 20, 541, 712, 799, 989, 1195, 1361
TaiI ACGT 3 cut(s) 207, 228, 849
TaqI TCGA 4 cut(s) 40, 282, 906, 1002
TasI AATT 9 cut(s) 487, 576, 650, 695, 723, 769, 945, 1004, 1055
TatI WGTACW 4 cut(s) 195, 583, 808, 1351
TauI GCSGC 2 cut(s) 76, 268
TfiI GAWTC 1 cut(s) 1235
Tru1I TTAA 2 cut(s) 1197, 1356
Tru9I TTAA 2 cut(s) 1197, 1356
TscAI CASTG 3 cut(s) 546, 992, 1291
TseI GCWGC 3 cut(s) 361, 622, 1171
TspDTI ATGAA 7 cut(s) 203, 569, 686, 690, 762, 771, 1245
TspGWI ACGGA 1 cut(s) 113
TspMI CCCGGG 1 cut(s) 365
TspRI CASTG 3 cut(s) 546, 992, 1291
VpaK11BI GGWCC 4 cut(s) 306, 560, 1009, 1090
XagI CCTNNNNNAGG 1 cut(s) 1097
XapI RAATTY 2 cut(s) 650, 695
XmaI CCCGGG 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 273, 1214
XspI CTAG 5 cut(s) 62, 786, 1094, 1374, 1381
ZrmI AGTACT 1 cut(s) 1353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.