Rh7AG402000

Ran-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0008588
Physical Location & Seq
Forward (+)
52962344 .. 52969907
7564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG402000.1

Sequence Viewer

Length: 1032 bp
ATGAGCACCAGCACCACCAACAACACCTCCACCACCGCCGATACCACCACCCACCGAGATCTCGGCCTGTGGTTCCTCGACCAATCGCGCCTCGGCTCCGTTCCCAGCGCCACCGCCATGGACGAGGACGAGGACTCCCCCACCGAGCTCAACACCCTCAACAGCTCCGGCGGCTTCCTCGTCGTCTCCCCCGATAAGCTCTCCGCCAGGTACACCAACATCAACCTTCACGGTCACGACGTCGGCGTCGTTCAGGCCAACAAGCCCGCTCCGGTCAAGCGCCTGGTCTACTACTTCGAGATTTACGTCAAGGACGCCGGCGCCAAGGGCCAGATTTCCATTGGATTCACTACTGAGAATTTTAAGATGCGGAGGCAGCCGGGATGGGAGGTAAATAGTTGTGGCTATCATGGGGATGATGGATTTCTGTACCGTGGACAAGGAAAGGGTGAGGCTTTTGGACCAACCTTCACATCTGATGATAGAGTTGGAGGTGGCATCAATTATGCATCACAGGAGTTCTTTTTCACTAAAAATGGAACTGTAGTGGGAACTGTGCCCAAGGACATGAAGGGTCCCTTATATCCTACCATTGCTGTACACAGCCAAAATGAGGAGGTGCAAGTCAACTTTGGGCAACAACCTTTTGCTTTTGATCTTAAGGAATTTGAAGCACAAGAGAGGATGAAGCAGCAAATGATGATTGAAAAGATTTCGTTGCCAACTAATGTTAGTCATGGAATTGTGCGCTCCTACTTGCTACATTATGGCTATGAAGATACGCTCAATTCATTTGACATGGCTAGTAAAAGTACTGTTCCCCCTGTATATATAGCTCAAGAAAATGGCTTTGATGAGCAGGATATTGTGTATGCACTAAATCAAAGAAACACTCTTAGACAGCTTGTCAGGAATGGAGAGATAGACTCTGCACTCGTTAAACTCCGTGAATGGTATCCCCAAATTGTTCAGGTAGACTGTCTCAGGTTTCAAAATGATTGTGGGTTTTTTTTTTCCTTGTTTTCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH SPRY

Protein Analysis

343

Amino Acids

38.45

Weight (kDa)

5.14

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 97 - 214 2.7e-22 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 2 cut(s) 288, 975
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
AcsI RAATTY 2 cut(s) 358, 665
AcyI GRCGYC 4 cut(s) 240, 246, 315, 321
AfaI GTAC 4 cut(s) 212, 431, 600, 814
AfiI CCNNNNNNNGG 1 cut(s) 613
AflII CTTAAG 1 cut(s) 659
AgsI TTSAA 3 cut(s) 671, 707, 992
AhdI GACNNNNNGTC 1 cut(s) 905
AjnI CCWGG 2 cut(s) 206, 282
AluBI AGCT 5 cut(s) 148, 165, 199, 836, 904
AluI AGCT 5 cut(s) 148, 165, 199, 836, 904
Alw21I GWGCWC 2 cut(s) 8, 150
Alw26I GTCTC 2 cut(s) 190, 986
AoxI GGCC 3 cut(s) 64, 255, 328
ApeKI GCWGC 2 cut(s) 376, 691
ApoI RAATTY 2 cut(s) 358, 665
AspLEI GCGC 5 cut(s) 90, 110, 282, 323, 750
AspS9I GGNCC 3 cut(s) 328, 461, 575
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 2 cut(s) 461, 575
BaeGI GKGCMC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 8, 150
BbvI GCAGC 2 cut(s) 388, 703
BccI CCATC 2 cut(s) 378, 413
BciT130I CCWGG 2 cut(s) 208, 284
BciVI GTATCC 1 cut(s) 966
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 190, 986
BfaI CTAG 1 cut(s) 804
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 3 cut(s) 111, 283, 324
BfrI CTTAAG 1 cut(s) 659
BfuI GTATCC 1 cut(s) 966
BglII AGATCT 1 cut(s) 58
BisI GCNGC 3 cut(s) 172, 377, 692
BlsI GCNGC 3 cut(s) 173, 378, 693
BmcAI AGTACT 1 cut(s) 814
Bme1390I CCNGG 3 cut(s) 208, 284, 381
Bme18I GGWCC 2 cut(s) 461, 575
BmeRI GACNNNNNGTC 1 cut(s) 905
BmgT120I GGNCC 3 cut(s) 328, 461, 575
BmiI GGNNCC 5 cut(s) 74, 97, 322, 576, 577
BmrFI CCNGG 3 cut(s) 208, 284, 381
BmsI GCATC 3 cut(s) 357, 507, 518
BplI GAGNNNNNCTC 2 cut(s) 911, 943
BpuEI CTTGAG 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 381
BsaHI GRCGYC 4 cut(s) 240, 246, 315, 321
BsaJI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse118I RCCGGY 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 208, 284
BseDI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BseGI GGATG 3 cut(s) 389, 421, 690
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 2 cut(s) 345, 997
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 2 cut(s) 388, 703
BseYI CCCAGC 1 cut(s) 104
BsgI GTGCAG 1 cut(s) 915
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 66, 257, 330
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 2 cut(s) 8, 150
BsiSI CCGG 4 cut(s) 168, 272, 318, 380
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 2 cut(s) 190, 986
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 3 cut(s) 66, 257, 330
Bsp1286I GDGCHC 3 cut(s) 8, 150, 561
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 2 cut(s) 58, 655
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
BspANI GGCC 3 cut(s) 66, 257, 330
BspCNI CTCAG 2 cut(s) 346, 996
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 5 cut(s) 74, 97, 322, 576, 577
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BssMI GATC 2 cut(s) 58, 655
BssNI GRCGYC 4 cut(s) 240, 246, 315, 321
BssT1I CCWWGG 3 cut(s) 117, 324, 561
Bst2UI CCWGG 2 cut(s) 208, 284
Bst4CI ACNGT 6 cut(s) 233, 434, 544, 556, 817, 980
BstACI GRCGYC 4 cut(s) 240, 246, 315, 321
BstAFI CTTAAG 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 267, 319
BstDEI CTNAG 3 cut(s) 354, 896, 983
BstDSI CCRYGG 2 cut(s) 117, 433
BstF5I GGATG 3 cut(s) 389, 421, 690
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 3 cut(s) 111, 283, 324
BstHHI GCGC 5 cut(s) 90, 110, 282, 323, 750
BstKTI GATC 2 cut(s) 61, 658
BstMAI GTCTC 2 cut(s) 190, 986
BstMBI GATC 2 cut(s) 58, 655
BstMWI GCNNNNNNNGC 3 cut(s) 171, 327, 376
BstNI CCWGG 2 cut(s) 208, 284
BstSCI CCNGG 3 cut(s) 206, 282, 379
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 388, 703
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 58
BsuI GTATCC 1 cut(s) 966
BsuRI GGCC 3 cut(s) 66, 257, 330
BtgI CCRYGG 2 cut(s) 117, 433
BtsCI GGATG 3 cut(s) 389, 421, 690
Cac8I GCNNGC 2 cut(s) 267, 319
CfoI GCGC 5 cut(s) 90, 110, 282, 323, 750
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 328, 461, 575
CseI GACGC 2 cut(s) 235, 323
Csp6I GTAC 4 cut(s) 211, 430, 599, 813
CviAII CATG 5 cut(s) 118, 410, 568, 737, 799
CviQI GTAC 4 cut(s) 211, 430, 599, 813
DdeI CTNAG 3 cut(s) 354, 896, 983
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 60, 657
DpnII GATC 2 cut(s) 58, 655
DrdI GACNNNNNNGTC 1 cut(s) 245
DriI GACNNNNNGTC 1 cut(s) 905
DseDI GACNNNNNNGTC 1 cut(s) 245
Eam1105I GACNNNNNGTC 1 cut(s) 905
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 117, 324, 561
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 461, 575
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 206, 282
EcoT14I CCWWGG 3 cut(s) 117, 324, 561
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 3 cut(s) 117, 324, 561
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 5 cut(s) 121, 413, 571, 740, 802
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 561
FatI CATG 5 cut(s) 117, 409, 567, 736, 798
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 2 cut(s) 288, 975
Fnu4HI GCNGC 3 cut(s) 172, 377, 692
FokI GGATG 3 cut(s) 396, 428, 697
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 3 cut(s) 172, 377, 692
FspBI CTAG 1 cut(s) 804
GlaI GCGC 5 cut(s) 89, 109, 281, 322, 749
GluI GCNGC 3 cut(s) 172, 377, 692
GsaI CCCAGC 1 cut(s) 108
HaeII RGCGCY 3 cut(s) 111, 283, 324
HaeIII GGCC 3 cut(s) 66, 257, 330
HapII CCGG 4 cut(s) 168, 272, 318, 380
HgaI GACGC 2 cut(s) 235, 323
HhaI GCGC 5 cut(s) 90, 110, 282, 323, 750
Hin1I GRCGYC 4 cut(s) 240, 246, 315, 321
Hin1II CATG 5 cut(s) 121, 413, 571, 740, 802
Hin6I GCGC 5 cut(s) 88, 108, 280, 321, 748
HinP1I GCGC 5 cut(s) 88, 108, 280, 321, 748
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 3 cut(s) 134, 345, 926
HpaII CCGG 4 cut(s) 168, 272, 318, 380
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 6 cut(s) 213, 289, 437, 601, 628, 976
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 4 cut(s) 236, 298, 839, 910
Hpy8I GTNNAC 6 cut(s) 213, 289, 437, 601, 628, 976
Hpy99I CGWCG 4 cut(s) 185, 242, 245, 251
HpyAV CCTTC 3 cut(s) 236, 478, 565
HpyCH4III ACNGT 6 cut(s) 233, 434, 544, 556, 817, 980
HpyCH4IV ACGT 2 cut(s) 240, 306
HpyCH4V TGCA 4 cut(s) 509, 622, 875, 932
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 327, 376
HpyF3I CTNAG 3 cut(s) 354, 896, 983
HpySE526I ACGT 2 cut(s) 240, 306
Hsp92I GRCGYC 4 cut(s) 240, 246, 315, 321
Hsp92II CATG 5 cut(s) 121, 413, 571, 740, 802
HspAI GCGC 5 cut(s) 88, 108, 280, 321, 748
KasI GGCGCC 1 cut(s) 320
KflI GGGWCCC 1 cut(s) 575
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 58, 655
LmnI GCTCC 4 cut(s) 101, 170, 274, 755
Lsp1109I GCAGC 2 cut(s) 388, 703
LweI GCATC 3 cut(s) 357, 507, 518
MaeI CTAG 1 cut(s) 804
MaeII ACGT 2 cut(s) 240, 306
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 60, 657
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 58, 655
MboII GAAGA 1 cut(s) 788
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 3 cut(s) 8, 150, 561
MluCI AATT 6 cut(s) 358, 502, 665, 741, 787, 963
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 2 cut(s) 128, 920
MmeI TCCRAC 1 cut(s) 469
Mph1103I ATGCAT 1 cut(s) 511
MreI CGCCGGCG 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 3 cut(s) 363, 660, 939
MslI CAYNNNNRTG 2 cut(s) 116, 414
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 4 cut(s) 168, 272, 318, 380
MspR9I CCNGG 3 cut(s) 208, 284, 381
MvaI CCWGG 2 cut(s) 208, 284
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 171, 327, 376
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 58, 655
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 5 cut(s) 121, 413, 571, 740, 802
NlaIV GGNNCC 5 cut(s) 74, 97, 322, 576, 577
NmeAIII GCCGAG 2 cut(s) 42, 72
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 511
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 237, 243, 246, 303
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 3 cut(s) 173, 378, 693
PleI GAGTC 2 cut(s) 128, 920
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 2 cut(s) 128, 920
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 206, 282
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 206, 282
PspN4I GGNNCC 5 cut(s) 74, 97, 322, 576, 577
PspPI GGNCC 3 cut(s) 328, 461, 575
PspPPI RGGWCCY 1 cut(s) 575
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 4 cut(s) 212, 431, 600, 814
RsaNI GTAC 4 cut(s) 211, 430, 599, 813
RseI CAYNNNNRTG 2 cut(s) 116, 414
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 3 cut(s) 363, 660, 939
SatI GCNGC 3 cut(s) 172, 377, 692
Sau3AI GATC 2 cut(s) 58, 655
Sau96I GGNCC 3 cut(s) 328, 461, 575
ScaI AGTACT 1 cut(s) 814
SchI GAGTC 2 cut(s) 128, 920
ScrFI CCNGG 3 cut(s) 208, 284, 381
SduI GDGCHC 3 cut(s) 8, 150, 561
SfaNI GCATC 3 cut(s) 357, 507, 518
SfcI CTRYAG 1 cut(s) 543
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 317
SinI GGWCC 2 cut(s) 461, 575
SmiMI CAYNNNNRTG 2 cut(s) 116, 414
SmlI CTYRAG 2 cut(s) 659, 837
SmoI CTYRAG 2 cut(s) 659, 837
Sse9I AATT 6 cut(s) 358, 502, 665, 741, 787, 963
SsiI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
SspDI GGCGCC 1 cut(s) 320
SspMI CTAG 1 cut(s) 804
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 206, 282, 379
StyI CCWWGG 3 cut(s) 117, 324, 561
TaaI ACNGT 6 cut(s) 233, 434, 544, 556, 817, 980
TaiI ACGT 2 cut(s) 243, 309
TaqI TCGA 2 cut(s) 78, 297
TasI AATT 6 cut(s) 358, 502, 665, 741, 787, 963
TatI WGTACW 2 cut(s) 598, 812
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 3 cut(s) 363, 660, 939
Tru9I TTAA 3 cut(s) 363, 660, 939
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 2 cut(s) 376, 691
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 4 cut(s) 584, 701, 780, 789
TspGWI ACGGA 2 cut(s) 88, 935
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 461, 575
XapI RAATTY 2 cut(s) 358, 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 2 cut(s) 288, 975
XspI CTAG 1 cut(s) 804
ZraI GACGTC 1 cut(s) 241
ZrmI AGTACT 1 cut(s) 814
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.