Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008588

Physical Location & Seq

Genomic Coordinates Reverse (-)

5924602 .. 5927738

Gene Structure 3137 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G09340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGAACAAATCCAACTTCATTCACAAATTTCATCACTCTGCAAAACCACATACAATGGAAGATAACGAAGAAGAAGAAGAATCACCGACGGAGTTAAACACGATCACCGGTTTAAGCGGTTTTGTAGTTATCTCTCCCGATAAGCTATCTCTCAAATACACTGGCGTTTCTCAACACGGTCACGATGTCGGCGTTGTTCAAGCTAATAAACCTGCTCCGTGTAAACGTTTCGCTTATTACTTCGAGATTTATGTTAAAGATGCTGGTGTTAAAGGACGTGTCTCCATTGGTTTCACTACTAATAGTTTCAGAATCGCGAGACATCCTGGATGGGAACTCAACACTTGTGGTTATCATGGTGAAGATGGGCTTATATATCTAGGAAAACGTCAAGGTGAAGCTTTTGGTCCGACTTATACAACTGGTGATACTGTTGGTGGTGGTATAAACTATGATTCGCAGGAATTCTTTTTCACTGTAAATGGAACTCTGGTAGGGACAGTCTCCAAGTACATCAAGGGTCCTCTATTCCCTACTGTAGCTGTACATAGCCAAAACGAAGAGGTTACAGTCAACTTCGGGCAGGAGAAGTTTGCCTTTGATTTTAAGGGATATGAATCATCGGAGAGGAATAAGCAACAAATAGCAATCGAAAAGATATCCATACCATCGAACATGAGTCTTGGGCTTGTAAAGAACTATTTGCTTCATTATGGGTATGAAGAGACTCATCATGCTTTAGACTTGGCTACTAACAGTACACTTCCTCCTATCAATGGAGCTCAAGAAAATGGTATTGATGATACATCATATGCATTGCATGAGAGAAAAATTCTTAGACAGCTTATACGGAAGGGTGAGATCGATGCTGCTCTTGCGAAACTCCGAGATAGCTATCCCCAACTTGTACAGAACGATAAATCAGAAGTATGCTTCCTCCTTCACTGTCAAAAGTTCATTGAATTAGTACGGATTGGAGCACTAGAAGAGGCTGTGAAATATGGACGAATGGAATTAGCCAAATTCATTGGTTTAACTACATTCCAAGACATTTTAGAGGACTGCTTTGCTTTGCTAGTGTACGAACGCCCCGAAGAATCGAATGTAGGGTATTTCCTAGAAGAGACTCAAAGGGAAGTAGTGGCAGACACAGTGAATGCTGCGATTTTATCTACAAAACCAAAGGGCAAAAATCAATCGCATTCTCATCTAGAGACACTTCTCCGACAACTAACAGCTTGCTGTCTGGAACTGCGGTCGCTTAACGATGGTCAAGGAGAAGCGTTCTCGCTTAACCGACTTCTTAGAACCAACAATTGGAAGAGGACAAAAAAGACTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CLTH SPRY

Protein Analysis

447

Amino Acids

50.19

Weight (kDa)

6.17

Isoelectric Point (pI)

37.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPRY	PF00622	79 - 195	6.6e-19	SPRY domain
CTLH	PF10607	275 - 414	2.6e-22	CTLH/CRA C-terminal to LisH motif domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008588)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G35470 AT1G35470 AT4G09340
fragaria_vesca	FvH4_5g32270
malus_domestica	MD08G1220100.v1.1 MD15G1410300.v1.1
prunus_persica	Prupe.1G552200_v2.0.a1
pyrus_communis	pycom08g19100 pycom15g36520
rosa_chinensis	RchiOBHm_Chr7g0228461 RchiOBHm_Chr7g0228471
rosa_laevigata	RLG00000001364 RLG00000001561
rosa_multiflora	Rmu_sc0004041.1_g000005
rosa_roxburghii	Rroxscaffold_3G00231120
rosa_rugosa	Rorug07G0249700.1 Rorug07G0249800
rosa_samantha	Rh7AG402000 Rh7BG383000 Rh7BG399200 Rh7CG421000 Rh7DG398100
rosa_wichuraiana	Rw7G033420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccB7I	CCANNNNNTGG	1 cut(s)	1317
AccII	CGCG	1 cut(s)	317
AciI	CCGC	2 cut(s)	117, 1255
AclI	AACGTT	1 cut(s)	226
AcsI	RAATTY	4 cut(s)	26, 464, 831, 1022
AfaI	GTAC	6 cut(s)	512, 546, 760, 909, 969, 1082
AfiI	CCNNNNNNNGG	2 cut(s)	776, 1317
AflIII	ACRYGT	1 cut(s)	277
AgeI	ACCGGT	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	200, 962
AjiI	CACGTC	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	1300, 1332
AluBI	AGCT	8 cut(s)	145, 203, 401, 542, 782, 844, 894, 1238
AluI	AGCT	8 cut(s)	145, 203, 401, 542, 782, 844, 894, 1238
Alw21I	GWGCWC	2 cut(s)	784, 982
Alw26I	GTCTC	6 cut(s)	286, 313, 508, 719, 1118, 1208
ApeKI	GCWGC	2 cut(s)	869, 1160
ApoI	RAATTY	4 cut(s)	26, 464, 831, 1022
AsiGI	ACCGGT	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	407, 521
AsuHPI	GGTGA	6 cut(s)	75, 97, 371, 407, 437, 869
AvaII	GGWCC	2 cut(s)	407, 521
BanII	GRGCYC	1 cut(s)	784
Bbv12I	GWGCWC	2 cut(s)	784, 982
BbvI	GCAGC	2 cut(s)	856, 1147
BccI	CCATC	4 cut(s)	324, 359, 676, 1262
BciT130I	CCWGG	1 cut(s)	327
BcoDI	GTCTC	6 cut(s)	286, 313, 508, 719, 1118, 1208
BfaI	CTAG	5 cut(s)	380, 983, 1076, 1118, 1211
BfmI	CTRYAG	1 cut(s)	537
BfuAI	ACCTGC	1 cut(s)	220
BisI	GCNGC	2 cut(s)	870, 1161
BlsI	GCNGC	2 cut(s)	871, 1162
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	407, 521
BmgBI	CACGTC	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	407, 521
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	2 cut(s)	250, 856
BpuEI	CTTGAG	1 cut(s)	768
Bsa29I	ATCGAT	1 cut(s)	864
BsaBI	GATNNNNATC	2 cut(s)	616, 894
BsaWI	WCCGGW	1 cut(s)	107
BsaXI	ACNNNNNCTCC	2 cut(s)	751, 781
Bsc4I	CCNNNNNNNGG	2 cut(s)	776, 1317
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	2 cut(s)	166, 427
Bse3DI	GCAATG	1 cut(s)	815
Bse8I	GATNNNNATC	2 cut(s)	616, 894
BseBI	CCWGG	1 cut(s)	327
BseCI	ATCGAT	1 cut(s)	864
BseGI	GGATG	2 cut(s)	322, 335
BseJI	GATNNNNATC	2 cut(s)	616, 894
BseLI	CCNNNNNNNGG	2 cut(s)	776, 1317
BseMI	GCAATG	1 cut(s)	815
BseNI	ACTGG	2 cut(s)	166, 427
BseXI	GCAGC	2 cut(s)	856, 1147
Bsh1236I	CGCG	1 cut(s)	317
Bsh1285I	CGRYCG	1 cut(s)	1259
BshTI	ACCGGT	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	864
BsiEI	CGRYCG	1 cut(s)	1259
BsiHKAI	GWGCWC	2 cut(s)	784, 982
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	511
BslI	CCNNNNNNNGG	2 cut(s)	776, 1317
BsmAI	GTCTC	6 cut(s)	286, 313, 508, 719, 1118, 1208
BsmFI	GGGAC	1 cut(s)	511
BsmI	GAATGC	2 cut(s)	1162, 1201
Bsp1286I	GDGCHC	2 cut(s)	784, 982
Bsp1407I	TGTACA	2 cut(s)	544, 907
Bsp143I	GATC	2 cut(s)	102, 861
Bsp68I	TCGCGA	1 cut(s)	317
BspACI	CCGC	2 cut(s)	117, 1255
BspDI	ATCGAT	1 cut(s)	864
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	522
BspMI	ACCTGC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	815
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	2 cut(s)	544, 907
BsrI	ACTGG	2 cut(s)	166, 427
BssAI	RCCGGY	1 cut(s)	107
BssMI	GATC	2 cut(s)	102, 861
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	9 cut(s)	179, 433, 478, 502, 538, 571, 758, 947, 1153
Bst6I	CTCTTC	5 cut(s)	555, 717, 981, 1116, 1316
BstAUI	TGTACA	2 cut(s)	544, 907
BstC8I	GCNNGC	1 cut(s)	1240
BstDEI	CTNAG	3 cut(s)	836, 1304, 1341
BstF5I	GGATG	2 cut(s)	322, 335
BstFNI	CGCG	1 cut(s)	317
BstKTI	GATC	2 cut(s)	105, 864
BstMAI	GTCTC	6 cut(s)	286, 313, 508, 719, 1118, 1208
BstMBI	GATC	2 cut(s)	102, 861
BstMCI	CGRYCG	1 cut(s)	1259
BstMWI	GCNNNNNNNGC	1 cut(s)	875
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	856, 1147
Bsu15I	ATCGAT	1 cut(s)	864
BsuTUI	ATCGAT	1 cut(s)	864
BtrI	CACGTC	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	322, 335
BtsIMutI	CAGTG	4 cut(s)	159, 474, 943, 1158
BtuMI	TCGCGA	1 cut(s)	317
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	1240
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	407, 521
ClaI	ATCGAT	1 cut(s)	864
Csp6I	GTAC	6 cut(s)	511, 545, 759, 908, 968, 1081
CspAI	ACCGGT	1 cut(s)	107
CspCI	CAANNNNNGTGG	2 cut(s)	328, 363
CviAII	CATG	4 cut(s)	356, 676, 734, 821
CviQI	GTAC	6 cut(s)	511, 545, 759, 908, 968, 1081
DdeI	CTNAG	3 cut(s)	836, 1304, 1341
DpnI	GATC	2 cut(s)	104, 863
DpnII	GATC	2 cut(s)	102, 861
Eam1104I	CTCTTC	5 cut(s)	555, 717, 981, 1116, 1316
EarI	CTCTTC	5 cut(s)	555, 717, 981, 1116, 1316
Ecl136II	GAGCTC	1 cut(s)	782
Eco24I	GRGCYC	1 cut(s)	784
Eco32I	GATATC	1 cut(s)	660
Eco47I	GGWCC	2 cut(s)	407, 521
Eco53kI	GAGCTC	1 cut(s)	782
EcoICRI	GAGCTC	1 cut(s)	782
EcoO109I	RGGNCCY	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	660
EcoT22I	ATGCAT	1 cut(s)	817
EcoT38I	GRGCYC	1 cut(s)	784
FaeI	CATG	4 cut(s)	359, 679, 737, 824
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 581, 613
FaqI	GGGAC	1 cut(s)	511
FatI	CATG	4 cut(s)	355, 675, 733, 820
FauNDI	CATATG	1 cut(s)	811
Fnu4HI	GCNGC	2 cut(s)	870, 1161
FokI	GGATG	2 cut(s)	309, 342
FriOI	GRGCYC	1 cut(s)	784
Fsp4HI	GCNGC	2 cut(s)	870, 1161
FspBI	CTAG	5 cut(s)	380, 983, 1076, 1118, 1211
GluI	GCNGC	2 cut(s)	870, 1161
HapII	CCGG	1 cut(s)	108
Hin1II	CATG	4 cut(s)	359, 679, 737, 824
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HindIII	AAGCTT	1 cut(s)	399
HinfI	GANTC	8 cut(s)	80, 312, 455, 617, 679, 727, 1097, 1126
HpaII	CCGG	1 cut(s)	108
HphI	GGTGA	6 cut(s)	75, 97, 371, 407, 437, 869
Hpy166II	GTNNAC	4 cut(s)	224, 574, 761, 1081
Hpy188I	TCNGA	6 cut(s)	311, 411, 625, 887, 925, 1226
Hpy188III	TCNNGA	7 cut(s)	137, 182, 244, 316, 785, 1211, 1247
Hpy8I	GTNNAC	4 cut(s)	224, 574, 761, 1081
Hpy99I	CGWCG	1 cut(s)	91
HpyAV	CCTTC	2 cut(s)	847, 950
HpyCH4III	ACNGT	9 cut(s)	179, 433, 478, 502, 538, 571, 758, 947, 1153
HpyCH4IV	ACGT	3 cut(s)	226, 277, 388
HpyCH4V	TGCA	3 cut(s)	41, 815, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	875
HpyF3I	CTNAG	3 cut(s)	836, 1304, 1341
HpySE526I	ACGT	3 cut(s)	226, 277, 388
Hsp92II	CATG	4 cut(s)	359, 679, 737, 824
Kzo9I	GATC	2 cut(s)	102, 861
LmnI	GCTCC	3 cut(s)	220, 779, 977
Lsp1109I	GCAGC	2 cut(s)	856, 1147
LweI	GCATC	2 cut(s)	250, 856
MaeI	CTAG	5 cut(s)	380, 983, 1076, 1118, 1211
MaeII	ACGT	3 cut(s)	226, 277, 388
MaeIII	GTNAC	2 cut(s)	179, 565
MalI	GATC	2 cut(s)	104, 863
MboI	GATC	2 cut(s)	102, 861
MfeI	CAATTG	1 cut(s)	1315
MhlI	GDGCHC	2 cut(s)	784, 982
MluCI	AATT	7 cut(s)	26, 464, 831, 962, 1013, 1022, 1315
MlyI	GAGTC	3 cut(s)	688, 721, 1120
MmeI	TCCRAC	3 cut(s)	36, 434, 1249
MnlI	CCTC	8 cut(s)	534, 556, 621, 777, 947, 982, 1051, 1317
Mph1103I	ATGCAT	1 cut(s)	817
MseI	TTAA	8 cut(s)	95, 113, 255, 270, 606, 1034, 1263, 1293
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	1315
Mva1269I	GAATGC	2 cut(s)	1162, 1201
MvaI	CCWGG	1 cut(s)	327
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	875
NdeI	CATATG	1 cut(s)	811
NdeII	GATC	2 cut(s)	102, 861
NlaIII	CATG	4 cut(s)	359, 679, 737, 824
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	1 cut(s)	179
NruI	TCGCGA	1 cut(s)	317
NsiI	ATGCAT	1 cut(s)	817
PcsI	WCGNNNNNNNCGW	2 cut(s)	189, 1089
PctI	GAATGC	2 cut(s)	1162, 1201
PfeI	GAWTC	5 cut(s)	80, 312, 455, 617, 1097
PflMI	CCANNNNNTGG	1 cut(s)	1317
PfoI	TCCNGGA	1 cut(s)	325
PinAI	ACCGGT	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	871, 1162
PleI	GAGTC	3 cut(s)	687, 721, 1120
PpsI	GAGTC	3 cut(s)	687, 721, 1120
PpuMI	RGGWCCY	1 cut(s)	521
Psp124BI	GAGCTC	1 cut(s)	784
Psp1406I	AACGTT	1 cut(s)	226
Psp5II	RGGWCCY	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	325
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	522
PspPI	GGNCC	2 cut(s)	407, 521
PspPPI	RGGWCCY	1 cut(s)	521
RruI	TCGCGA	1 cut(s)	317
RsaI	GTAC	6 cut(s)	512, 546, 760, 909, 969, 1082
RsaNI	GTAC	6 cut(s)	511, 545, 759, 908, 968, 1081
SacI	GAGCTC	1 cut(s)	784
SaqAI	TTAA	8 cut(s)	95, 113, 255, 270, 606, 1034, 1263, 1293
SatI	GCNGC	2 cut(s)	870, 1161
Sau3AI	GATC	2 cut(s)	102, 861
Sau96I	GGNCC	2 cut(s)	407, 521
SchI	GAGTC	3 cut(s)	688, 721, 1120
ScrFI	CCNGG	1 cut(s)	327
SduI	GDGCHC	2 cut(s)	784, 982
SfaNI	GCATC	2 cut(s)	250, 856
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	407, 521
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
Sse9I	AATT	7 cut(s)	26, 464, 831, 962, 1013, 1022, 1315
SsiI	CCGC	2 cut(s)	117, 1255
SspMI	CTAG	5 cut(s)	380, 983, 1076, 1118, 1211
SstI	GAGCTC	1 cut(s)	784
StyD4I	CCNGG	1 cut(s)	325
TaaI	ACNGT	9 cut(s)	179, 433, 478, 502, 538, 571, 758, 947, 1153
TaiI	ACGT	3 cut(s)	229, 280, 391
TaqI	TCGA	5 cut(s)	243, 651, 671, 864, 1100
TasI	AATT	7 cut(s)	26, 464, 831, 962, 1013, 1022, 1315
TatI	WGTACW	4 cut(s)	510, 544, 758, 907
TfiI	GAWTC	5 cut(s)	80, 312, 455, 617, 1097
Tru1I	TTAA	8 cut(s)	95, 113, 255, 270, 606, 1034, 1263, 1293
Tru9I	TTAA	8 cut(s)	95, 113, 255, 270, 606, 1034, 1263, 1293
TscAI	CASTG	4 cut(s)	166, 481, 950, 1158
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	869, 1160
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	8 cut(s)	7, 17, 20, 630, 698, 735, 946, 1015
TspGWI	ACGGA	4 cut(s)	104, 207, 865, 985
TspRI	CASTG	4 cut(s)	166, 481, 950, 1158
Van91I	CCANNNNNTGG	1 cut(s)	1317
VpaK11BI	GGWCC	2 cut(s)	407, 521
XapI	RAATTY	4 cut(s)	26, 464, 831, 1022
XbaI	TCTAGA	1 cut(s)	1210
XspI	CTAG	5 cut(s)	380, 983, 1076, 1118, 1211
Zsp2I	ATGCAT	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.