RLG00000001364

Ran-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008588
Physical Location & Seq
Forward (+)
14698731 .. 14701652
2922 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001364

Sequence Viewer

Length: 360 bp
ATGGATTTCTGTATCTTGGACAAGGAAAGGGTCACATCTGATGATAGAGTTGGAGGTGGCATCAATTATGCATCACAGGAGTTCTTTTTCACTAAAAATGGAACTGTGCCCAAGGACATCATGGGTCCTTTATATCCTACCATTGCTGTACACAGCCAAAATGAGGAGTATCTGACATCTTTCTTGAATATTAAGCTGCTGTTCATGGTGCAAGTCAACTTTGGGCAACGACCTTTTGCTTTTGATCTTAAGGTTATCCCAAGAATCCCTTGCCACATATCAATGCAGAAGTTTACCTTGGAGTTGAAAATTCATAATTTTACTAATTGTGCGCTCCTACTTACTACATTATGGCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH SPRY

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

6.81

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 309
AfaI GTAC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 163
AflII CTTAAG 1 cut(s) 248
AgsI TTSAA 2 cut(s) 187, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 281, 313
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 309
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 1 cut(s) 125
AvaII GGWCC 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 111
BbvI GCAGC 1 cut(s) 183
BfrI CTTAAG 1 cut(s) 248
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 2 cut(s) 69, 80
BsaJI CCNNGG 2 cut(s) 111, 297
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse3DI GCAATG 1 cut(s) 141
BseDI CCNNGG 2 cut(s) 111, 297
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 141
BseRI GAGGAG 1 cut(s) 179
BseSI GKGCMC 1 cut(s) 111
BseXI GCAGC 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 163
Bsp1286I GDGCHC 1 cut(s) 111
Bsp1407I TGTACA 1 cut(s) 148
Bsp143I GATC 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 141
BsrGI TGTACA 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 111, 297
BssMI GATC 1 cut(s) 244
BssT1I CCWWGG 2 cut(s) 111, 297
Bst4CI ACNGT 1 cut(s) 106
BstAFI CTTAAG 1 cut(s) 248
BstAUI TGTACA 1 cut(s) 148
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 1 cut(s) 247
BstMBI GATC 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 183
CfoI GCGC 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 1 cut(s) 149
CviAII CATG 2 cut(s) 121, 205
CviJI RGCY 3 cut(s) 156, 196, 355
CviKI_1 RGCY 3 cut(s) 156, 196, 355
CviQI GTAC 1 cut(s) 149
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
Eco130I CCWWGG 2 cut(s) 111, 297
Eco47I GGWCC 1 cut(s) 125
EcoO109I RGGNCCY 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 111, 297
EcoT22I ATGCAT 1 cut(s) 73
ErhI CCWWGG 2 cut(s) 111, 297
FaeI CATG 2 cut(s) 124, 208
FaiI YATR 8 cut(s) 69, 122, 133, 206, 278, 315, 352, 358
FalI AAGNNNNNCTT 4 cut(s) 253, 285, 281, 313
FatI CATG 2 cut(s) 120, 204
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 197
HhaI GCGC 1 cut(s) 334
Hin1II CATG 2 cut(s) 124, 208
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 1 cut(s) 264
Hpy166II GTNNAC 3 cut(s) 151, 217, 294
Hpy188I TCNGA 2 cut(s) 40, 174
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 3 cut(s) 151, 217, 294
HpyCH4III ACNGT 1 cut(s) 106
HpyCH4V TGCA 3 cut(s) 71, 211, 286
Hsp92II CATG 2 cut(s) 124, 208
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 1 cut(s) 62
Lsp1109I GCAGC 1 cut(s) 183
LweI GCATC 2 cut(s) 69, 80
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 4 cut(s) 64, 309, 316, 325
MmeI TCCRAC 1 cut(s) 31
MnlI CCTC 2 cut(s) 47, 157
Mph1103I ATGCAT 1 cut(s) 73
MseI TTAA 2 cut(s) 192, 249
MslI CAYNNNNRTG 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 248
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 124, 208
NlaIV GGNNCC 1 cut(s) 126
NmuCI GTSAC 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 73
PfeI GAWTC 1 cut(s) 264
PkrI GCNGC 1 cut(s) 198
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 125
PspPPI RGGWCCY 1 cut(s) 125
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 192, 249
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 1 cut(s) 125
SduI GDGCHC 1 cut(s) 111
SetI ASST 5 cut(s) 58, 198, 235, 255, 299
SfaNI GCATC 2 cut(s) 69, 80
SinI GGWCC 1 cut(s) 125
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 4 cut(s) 64, 309, 316, 325
SspI AATATT 1 cut(s) 190
StyI CCWWGG 2 cut(s) 111, 297
TaaI ACNGT 1 cut(s) 106
TasI AATT 4 cut(s) 64, 309, 316, 325
TatI WGTACW 1 cut(s) 148
TfiI GAWTC 1 cut(s) 264
Tru1I TTAA 2 cut(s) 192, 249
Tru9I TTAA 2 cut(s) 192, 249
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 193, 302
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 125
XapI RAATTY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 118
Zsp2I ATGCAT 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.