Ran-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G35470 AT1G35470 AT4G09340 |
| fragaria_vesca | FvH4_5g32270 |
| malus_domestica | MD08G1220100.v1.1 MD15G1410300.v1.1 |
| prunus_persica | Prupe.1G552200_v2.0.a1 |
| pyrus_communis | pycom08g19100 pycom15g36520 |
| rosa_chinensis | RchiOBHm_Chr7g0228461 RchiOBHm_Chr7g0228471 |
| rosa_laevigata | RLG00000001364 RLG00000001561 |
| rosa_multiflora | Rmu_sc0004041.1_g000005 |
| rosa_roxburghii | Rroxscaffold_3G00231120 |
| rosa_rugosa | Rorug07G0249700.1 Rorug07G0249800 |
| rosa_samantha | Rh7AG402000 Rh7BG383000 Rh7BG399200 Rh7CG421000 Rh7DG398100 |
| rosa_wichuraiana | Rw7G033420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 237 |
| AccB1I | GGYRCC | 1 cut(s) | 262 |
| AccBSI | CCGCTC | 1 cut(s) | 90 |
| AccI | GTMKAC | 1 cut(s) | 282 |
| AccII | CGCG | 1 cut(s) | 82 |
| AciI | CCGC | 5 cut(s) | 82, 88, 165, 274, 364 |
| AclWI | GGATC | 1 cut(s) | 1443 |
| AcoI | YGGCCR | 2 cut(s) | 226, 1241 |
| AcsI | RAATTY | 4 cut(s) | 512, 758, 804, 880 |
| AcyI | GRCGYC | 2 cut(s) | 234, 263 |
| AfaI | GTAC | 8 cut(s) | 28, 206, 594, 615, 728, 907, 921, 1467 |
| AfeI | AGCGCT | 1 cut(s) | 1134 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 607 |
| AflII | CTTAAG | 1 cut(s) | 653 |
| AflIII | ACRYGT | 1 cut(s) | 616 |
| AgsI | TTSAA | 6 cut(s) | 358, 689, 764, 800, 1115, 1274 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 321 |
| AjiI | CACGTC | 1 cut(s) | 892 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1242, 1274 |
| AluBI | AGCT | 7 cut(s) | 142, 159, 193, 354, 929, 997, 1396 |
| AluI | AGCT | 7 cut(s) | 142, 159, 193, 354, 929, 997, 1396 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 144 |
| Alw26I | GTCTC | 2 cut(s) | 45, 1284 |
| AlwI | GGATC | 1 cut(s) | 1443 |
| Ama87I | CYCGRG | 2 cut(s) | 71, 96 |
| Aor51HI | AGCGCT | 1 cut(s) | 1134 |
| AoxI | GGCC | 5 cut(s) | 100, 226, 454, 568, 1241 |
| ApaI | GGGCCC | 1 cut(s) | 572 |
| ApeKI | GCWGC | 3 cut(s) | 370, 631, 1393 |
| ApoI | RAATTY | 4 cut(s) | 512, 758, 804, 880 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 947, 979 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1119 |
| AspLEI | GCGC | 3 cut(s) | 265, 769, 1135 |
| AspS9I | GGNCC | 6 cut(s) | 100, 315, 455, 568, 569, 1201 |
| AsuC2I | CCSGG | 2 cut(s) | 313, 375 |
| AsuHPI | GGTGA | 1 cut(s) | 485 |
| AvaI | CYCGRG | 2 cut(s) | 71, 96 |
| AvaII | GGWCC | 2 cut(s) | 315, 1201 |
| BaeGI | GKGCMC | 2 cut(s) | 555, 572 |
| BanI | GGYRCC | 1 cut(s) | 262 |
| BanII | GRGCYC | 2 cut(s) | 144, 572 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 144 |
| BbvI | GCAGC | 3 cut(s) | 382, 643, 1405 |
| BccI | CCATC | 6 cut(s) | 158, 372, 407, 753, 1156, 1461 |
| BceAI | ACGGC | 2 cut(s) | 241, 1256 |
| BciVI | GTATCC | 1 cut(s) | 1059 |
| BcnI | CCSGG | 2 cut(s) | 313, 375 |
| BcoDI | GTCTC | 2 cut(s) | 45, 1284 |
| BfaI | CTAG | 2 cut(s) | 897, 1205 |
| BfmI | CTRYAG | 1 cut(s) | 1457 |
| BfoI | RGCGCY | 2 cut(s) | 266, 1136 |
| BfrI | CTTAAG | 1 cut(s) | 653 |
| BfuI | GTATCC | 1 cut(s) | 1059 |
| BisI | GCNGC | 6 cut(s) | 83, 166, 275, 371, 632, 1394 |
| BlsI | GCNGC | 6 cut(s) | 84, 167, 276, 372, 633, 1395 |
| BmcAI | AGTACT | 2 cut(s) | 907, 1467 |
| Bme1390I | CCNGG | 2 cut(s) | 313, 375 |
| Bme18I | GGWCC | 2 cut(s) | 315, 1201 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 321 |
| BmeT110I | CYCGRG | 2 cut(s) | 71, 96 |
| BmgBI | CACGTC | 1 cut(s) | 892 |
| BmgT120I | GGNCC | 6 cut(s) | 100, 315, 455, 568, 569, 1201 |
| BmiI | GGNNCC | 6 cut(s) | 86, 101, 264, 316, 570, 571 |
| BmrFI | CCNGG | 2 cut(s) | 313, 375 |
| BmsI | GCATC | 4 cut(s) | 118, 298, 351, 501 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 970, 1002, 1004, 1036 |
| BpmI | CTGGAG | 2 cut(s) | 900, 1157 |
| BpuEI | CTTGAG | 2 cut(s) | 915, 1397 |
| BpuMI | CCSGG | 2 cut(s) | 313, 375 |
| BsaHI | GRCGYC | 2 cut(s) | 234, 263 |
| BsaI | GGTCTC | 1 cut(s) | 45 |
| BsaJI | CCNNGG | 5 cut(s) | 55, 135, 318, 555, 1244 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 898, 928, 1406, 1436 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 607 |
| Bse118I | RCCGGY | 3 cut(s) | 41, 259, 265 |
| Bse1I | ACTGG | 1 cut(s) | 917 |
| Bse3DI | GCAATG | 3 cut(s) | 585, 673, 1320 |
| BseDI | CCNNGG | 5 cut(s) | 55, 135, 318, 555, 1244 |
| BseGI | GGATG | 6 cut(s) | 133, 313, 383, 783, 1072, 1167 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 607 |
| BseMI | GCAATG | 3 cut(s) | 585, 673, 1320 |
| BseMII | CTCAG | 3 cut(s) | 339, 1295, 1402 |
| BseNI | ACTGG | 1 cut(s) | 917 |
| BseRI | GAGGAG | 2 cut(s) | 623, 1154 |
| BseSI | GKGCMC | 2 cut(s) | 555, 572 |
| BseXI | GCAGC | 3 cut(s) | 382, 643, 1405 |
| Bsh1236I | CGCG | 1 cut(s) | 82 |
| Bsh1285I | CGRYCG | 1 cut(s) | 49 |
| BshFI | GGCC | 5 cut(s) | 102, 228, 456, 570, 1243 |
| BshNI | GGYRCC | 1 cut(s) | 262 |
| BsiEI | CGRYCG | 1 cut(s) | 49 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 144 |
| BsiHKCI | CYCGRG | 2 cut(s) | 71, 96 |
| BsiSI | CCGG | 6 cut(s) | 42, 162, 260, 266, 312, 375 |
| BslFI | GGGAC | 3 cut(s) | 166, 328, 444 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 607 |
| BsmAI | GTCTC | 2 cut(s) | 45, 1284 |
| BsmFI | GGGAC | 3 cut(s) | 166, 328, 444 |
| BsmI | GAATGC | 1 cut(s) | 1366 |
| BsnI | GGCC | 5 cut(s) | 102, 228, 456, 570, 1243 |
| Bso31I | GGTCTC | 1 cut(s) | 45 |
| BsoBI | CYCGRG | 2 cut(s) | 71, 96 |
| Bsp120I | GGGCCC | 1 cut(s) | 568 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 144, 555, 572 |
| Bsp1407I | TGTACA | 2 cut(s) | 592, 726 |
| Bsp143I | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| BspACI | CCGC | 5 cut(s) | 82, 88, 165, 274, 364 |
| BspANI | GGCC | 5 cut(s) | 102, 228, 456, 570, 1243 |
| BspCNI | CTCAG | 3 cut(s) | 340, 1294, 1401 |
| BspFNI | CGCG | 1 cut(s) | 82 |
| BspLI | GGNNCC | 6 cut(s) | 86, 101, 264, 316, 570, 571 |
| BspMAI | CTGCAG | 1 cut(s) | 1461 |
| BspPI | GGATC | 1 cut(s) | 1443 |
| BspT107I | GGYRCC | 1 cut(s) | 262 |
| BspTI | CTTAAG | 1 cut(s) | 653 |
| BspTNI | GGTCTC | 1 cut(s) | 45 |
| BsrBI | CCGCTC | 1 cut(s) | 90 |
| BsrDI | GCAATG | 3 cut(s) | 585, 673, 1320 |
| BsrFI | RCCGGY | 3 cut(s) | 41, 259, 265 |
| BsrGI | TGTACA | 2 cut(s) | 592, 726 |
| BsrI | ACTGG | 1 cut(s) | 917 |
| BssAI | RCCGGY | 3 cut(s) | 41, 259, 265 |
| BssECI | CCNNGG | 5 cut(s) | 55, 135, 318, 555, 1244 |
| BssMI | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| BssNI | GRCGYC | 2 cut(s) | 234, 263 |
| BssT1I | CCWWGG | 2 cut(s) | 318, 555 |
| Bst4CI | ACNGT | 7 cut(s) | 550, 739, 910, 1100, 1306, 1358, 1476 |
| Bst6I | CTCTTC | 1 cut(s) | 1269 |
| BstACI | GRCGYC | 2 cut(s) | 234, 263 |
| BstAFI | CTTAAG | 1 cut(s) | 653 |
| BstAUI | TGTACA | 2 cut(s) | 592, 726 |
| BstC8I | GCNNGC | 6 cut(s) | 43, 261, 1187, 1230, 1364, 1405 |
| BstDEI | CTNAG | 4 cut(s) | 348, 989, 1281, 1388 |
| BstDSI | CCRYGG | 2 cut(s) | 135, 1244 |
| BstF5I | GGATG | 6 cut(s) | 133, 313, 383, 783, 1072, 1167 |
| BstFNI | CGCG | 1 cut(s) | 82 |
| BstH2I | RGCGCY | 2 cut(s) | 266, 1136 |
| BstHHI | GCGC | 3 cut(s) | 265, 769, 1135 |
| BstKTI | GATC | 4 cut(s) | 652, 1017, 1320, 1438 |
| BstMAI | GTCTC | 2 cut(s) | 45, 1284 |
| BstMBI | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| BstMCI | CGRYCG | 1 cut(s) | 49 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 82, 165, 271, 370, 405 |
| BstNSI | RCATGY | 1 cut(s) | 1086 |
| BstSCI | CCNGG | 2 cut(s) | 311, 373 |
| BstSFI | CTRYAG | 1 cut(s) | 1457 |
| BstSLI | GKGCMC | 2 cut(s) | 555, 572 |
| BstUI | CGCG | 1 cut(s) | 82 |
| BstV1I | GCAGC | 3 cut(s) | 382, 643, 1405 |
| BsuI | GTATCC | 1 cut(s) | 1059 |
| BsuRI | GGCC | 5 cut(s) | 102, 228, 456, 570, 1243 |
| BtgI | CCRYGG | 2 cut(s) | 135, 1244 |
| BtgZI | GCGATG | 1 cut(s) | 423 |
| BtrI | CACGTC | 1 cut(s) | 892 |
| BtsCI | GGATG | 6 cut(s) | 133, 313, 383, 783, 1072, 1167 |
| BtsIMutI | CAGTG | 3 cut(s) | 555, 729, 1096 |
| Cac8I | GCNNGC | 6 cut(s) | 43, 261, 1187, 1230, 1364, 1405 |
| CfoI | GCGC | 3 cut(s) | 265, 769, 1135 |
| Cfr10I | RCCGGY | 3 cut(s) | 41, 259, 265 |
| Cfr13I | GGNCC | 6 cut(s) | 100, 315, 455, 568, 569, 1201 |
| Csp6I | GTAC | 8 cut(s) | 27, 205, 593, 614, 727, 906, 920, 1466 |
| CviAII | CATG | 6 cut(s) | 112, 241, 404, 434, 830, 1083 |
| CviQI | GTAC | 8 cut(s) | 27, 205, 593, 614, 727, 906, 920, 1466 |
| DdeI | CTNAG | 4 cut(s) | 348, 989, 1281, 1388 |
| DinI | GGCGCC | 1 cut(s) | 264 |
| DpnI | GATC | 4 cut(s) | 651, 1016, 1319, 1437 |
| DpnII | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| DriI | GACNNNNNGTC | 1 cut(s) | 321 |
| EaeI | YGGCCR | 2 cut(s) | 226, 1241 |
| Eam1104I | CTCTTC | 1 cut(s) | 1269 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 321 |
| EarI | CTCTTC | 1 cut(s) | 1269 |
| Ecl136II | GAGCTC | 1 cut(s) | 142 |
| Eco130I | CCWWGG | 2 cut(s) | 318, 555 |
| Eco24I | GRGCYC | 2 cut(s) | 144, 572 |
| Eco31I | GGTCTC | 1 cut(s) | 45 |
| Eco32I | GATATC | 1 cut(s) | 1265 |
| Eco47I | GGWCC | 2 cut(s) | 315, 1201 |
| Eco47III | AGCGCT | 1 cut(s) | 1134 |
| Eco53kI | GAGCTC | 1 cut(s) | 142 |
| Eco88I | CYCGRG | 2 cut(s) | 71, 96 |
| EcoICRI | GAGCTC | 1 cut(s) | 142 |
| EcoO109I | RGGNCCY | 4 cut(s) | 100, 568, 569, 1201 |
| EcoRI | GAATTC | 2 cut(s) | 512, 880 |
| EcoRV | GATATC | 1 cut(s) | 1265 |
| EcoT14I | CCWWGG | 2 cut(s) | 318, 555 |
| EcoT38I | GRGCYC | 2 cut(s) | 144, 572 |
| EgeI | GGCGCC | 1 cut(s) | 264 |
| EheI | GGCGCC | 1 cut(s) | 264 |
| ErhI | CCWWGG | 2 cut(s) | 318, 555 |
| FaeI | CATG | 6 cut(s) | 115, 244, 407, 437, 833, 1086 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 557, 589, 652, 684 |
| FaqI | GGGAC | 3 cut(s) | 166, 328, 444 |
| FatI | CATG | 6 cut(s) | 111, 240, 403, 433, 829, 1082 |
| FblI | GTMKAC | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 6 cut(s) | 83, 166, 275, 371, 632, 1394 |
| FokI | GGATG | 6 cut(s) | 140, 320, 390, 790, 1079, 1174 |
| FriOI | GRGCYC | 2 cut(s) | 144, 572 |
| Fsp4HI | GCNGC | 6 cut(s) | 83, 166, 275, 371, 632, 1394 |
| FspBI | CTAG | 2 cut(s) | 897, 1205 |
| GlaI | GCGC | 3 cut(s) | 264, 768, 1134 |
| GluI | GCNGC | 6 cut(s) | 83, 166, 275, 371, 632, 1394 |
| GsuI | CTGGAG | 2 cut(s) | 900, 1157 |
| HaeII | RGCGCY | 2 cut(s) | 266, 1136 |
| HaeIII | GGCC | 5 cut(s) | 102, 228, 456, 570, 1243 |
| HapII | CCGG | 6 cut(s) | 42, 162, 260, 266, 312, 375 |
| HhaI | GCGC | 3 cut(s) | 265, 769, 1135 |
| Hin1I | GRCGYC | 2 cut(s) | 234, 263 |
| Hin1II | CATG | 6 cut(s) | 115, 244, 407, 437, 833, 1086 |
| Hin6I | GCGC | 3 cut(s) | 263, 767, 1133 |
| HinP1I | GCGC | 3 cut(s) | 263, 767, 1133 |
| HincII | GTYRAC | 2 cut(s) | 622, 1326 |
| HindII | GTYRAC | 2 cut(s) | 622, 1326 |
| HinfI | GANTC | 7 cut(s) | 503, 700, 985, 1019, 1250, 1277, 1346 |
| HpaI | GTTAAC | 1 cut(s) | 622 |
| HpaII | CCGG | 6 cut(s) | 42, 162, 260, 266, 312, 375 |
| HphI | GGTGA | 1 cut(s) | 485 |
| Hpy166II | GTNNAC | 9 cut(s) | 207, 283, 595, 616, 622, 727, 729, 1034, 1326 |
| Hpy188I | TCNGA | 5 cut(s) | 327, 349, 757, 1130, 1341 |
| Hpy188III | TCNNGA | 4 cut(s) | 358, 932, 1064, 1376 |
| Hpy8I | GTNNAC | 9 cut(s) | 207, 283, 595, 616, 622, 727, 729, 1034, 1326 |
| Hpy99I | CGWCG | 3 cut(s) | 179, 236, 239 |
| HpyAV | CCTTC | 3 cut(s) | 432, 559, 1413 |
| HpyCH4III | ACNGT | 7 cut(s) | 550, 739, 910, 1100, 1306, 1358, 1476 |
| HpyCH4IV | ACGT | 4 cut(s) | 213, 234, 618, 891 |
| HpyCH4V | TGCA | 4 cut(s) | 968, 1313, 1366, 1459 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 82, 165, 271, 370, 405 |
| HpyF3I | CTNAG | 4 cut(s) | 348, 989, 1281, 1388 |
| HpySE526I | ACGT | 4 cut(s) | 213, 234, 618, 891 |
| Hsp92I | GRCGYC | 2 cut(s) | 234, 263 |
| Hsp92II | CATG | 6 cut(s) | 115, 244, 407, 437, 833, 1086 |
| HspAI | GCGC | 3 cut(s) | 263, 767, 1133 |
| KasI | GGCGCC | 1 cut(s) | 262 |
| KroI | GCCGGC | 2 cut(s) | 41, 259 |
| KroNI | GCCGGC | 2 cut(s) | 43, 261 |
| KspAI | GTTAAC | 1 cut(s) | 622 |
| Kzo9I | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| LmnI | GCTCC | 6 cut(s) | 90, 139, 164, 848, 1098, 1130 |
| Lsp1109I | GCAGC | 3 cut(s) | 382, 643, 1405 |
| LweI | GCATC | 4 cut(s) | 118, 298, 351, 501 |
| MaeI | CTAG | 2 cut(s) | 897, 1205 |
| MaeII | ACGT | 4 cut(s) | 213, 234, 618, 891 |
| MaeIII | GTNAC | 1 cut(s) | 1383 |
| MalI | GATC | 4 cut(s) | 651, 1016, 1319, 1437 |
| MbiI | CCGCTC | 1 cut(s) | 90 |
| MboI | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| MboII | GAAGA | 4 cut(s) | 212, 881, 1286, 1341 |
| MfeI | CAATTG | 1 cut(s) | 795 |
| MhlI | GDGCHC | 4 cut(s) | 8, 144, 555, 572 |
| MluCI | AATT | 9 cut(s) | 496, 512, 758, 795, 804, 834, 880, 1056, 1166 |
| Mly113I | GGCGCC | 1 cut(s) | 263 |
| MlyI | GAGTC | 3 cut(s) | 979, 1013, 1286 |
| MmeI | TCCRAC | 4 cut(s) | 42, 463, 1108, 1240 |
| MreI | CGCCGGCG | 1 cut(s) | 41 |
| MroNI | GCCGGC | 2 cut(s) | 41, 259 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1119 |
| MseI | TTAA | 5 cut(s) | 621, 654, 707, 1308, 1470 |
| MslI | CAYNNNNRTG | 1 cut(s) | 408 |
| MspCI | CTTAAG | 1 cut(s) | 653 |
| MspI | CCGG | 6 cut(s) | 42, 162, 260, 266, 312, 375 |
| MspR9I | CCNGG | 2 cut(s) | 313, 375 |
| MunI | CAATTG | 1 cut(s) | 795 |
| Mva1269I | GAATGC | 1 cut(s) | 1366 |
| MvnI | CGCG | 1 cut(s) | 82 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 82, 165, 271, 370, 405 |
| NaeI | GCCGGC | 2 cut(s) | 43, 261 |
| NarI | GGCGCC | 1 cut(s) | 263 |
| NciI | CCSGG | 2 cut(s) | 313, 375 |
| NdeII | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| NgoMIV | GCCGGC | 2 cut(s) | 41, 259 |
| NlaIII | CATG | 6 cut(s) | 115, 244, 407, 437, 833, 1086 |
| NlaIV | GGNNCC | 6 cut(s) | 86, 101, 264, 316, 570, 571 |
| NspI | RCATGY | 1 cut(s) | 1086 |
| PaeR7I | CTCGAG | 1 cut(s) | 71 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 231 |
| PctI | GAATGC | 1 cut(s) | 1366 |
| PdiI | GCCGGC | 2 cut(s) | 43, 261 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1119 |
| PfeI | GAWTC | 4 cut(s) | 503, 700, 1250, 1346 |
| PkrI | GCNGC | 6 cut(s) | 84, 167, 276, 372, 633, 1395 |
| PleI | GAGTC | 3 cut(s) | 979, 1013, 1285 |
| PluTI | GGCGCC | 1 cut(s) | 266 |
| PpsI | GAGTC | 3 cut(s) | 979, 1013, 1285 |
| PpuMI | RGGWCCY | 1 cut(s) | 1201 |
| Psp124BI | GAGCTC | 1 cut(s) | 144 |
| Psp5II | RGGWCCY | 1 cut(s) | 1201 |
| PspN4I | GGNNCC | 6 cut(s) | 86, 101, 264, 316, 570, 571 |
| PspOMI | GGGCCC | 1 cut(s) | 568 |
| PspPI | GGNCC | 6 cut(s) | 100, 315, 455, 568, 569, 1201 |
| PspPPI | RGGWCCY | 1 cut(s) | 1201 |
| PspXI | VCTCGAGB | 1 cut(s) | 71 |
| PstI | CTGCAG | 1 cut(s) | 1461 |
| RsaI | GTAC | 8 cut(s) | 28, 206, 594, 615, 728, 907, 921, 1467 |
| RsaNI | GTAC | 8 cut(s) | 27, 205, 593, 614, 727, 906, 920, 1466 |
| RseI | CAYNNNNRTG | 1 cut(s) | 408 |
| SacI | GAGCTC | 1 cut(s) | 144 |
| SaqAI | TTAA | 5 cut(s) | 621, 654, 707, 1308, 1470 |
| SatI | GCNGC | 6 cut(s) | 83, 166, 275, 371, 632, 1394 |
| Sau3AI | GATC | 4 cut(s) | 649, 1014, 1317, 1435 |
| Sau96I | GGNCC | 6 cut(s) | 100, 315, 455, 568, 569, 1201 |
| ScaI | AGTACT | 2 cut(s) | 907, 1467 |
| SchI | GAGTC | 3 cut(s) | 979, 1013, 1286 |
| ScrFI | CCNGG | 2 cut(s) | 313, 375 |
| SduI | GDGCHC | 4 cut(s) | 8, 144, 555, 572 |
| SfaNI | GCATC | 4 cut(s) | 118, 298, 351, 501 |
| SfcI | CTRYAG | 1 cut(s) | 1457 |
| SfoI | GGCGCC | 1 cut(s) | 264 |
| Sfr274I | CTCGAG | 1 cut(s) | 71 |
| SgrAI | CRCCGGYG | 1 cut(s) | 41 |
| SinI | GGWCC | 2 cut(s) | 315, 1201 |
| SlaI | CTCGAG | 1 cut(s) | 71 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 408 |
| SmlI | CTYRAG | 4 cut(s) | 71, 653, 930, 1376 |
| SmoI | CTYRAG | 4 cut(s) | 71, 653, 930, 1376 |
| Sse9I | AATT | 9 cut(s) | 496, 512, 758, 795, 804, 834, 880, 1056, 1166 |
| SsiI | CCGC | 5 cut(s) | 82, 88, 165, 274, 364 |
| SspDI | GGCGCC | 1 cut(s) | 262 |
| SspMI | CTAG | 2 cut(s) | 897, 1205 |
| SstI | GAGCTC | 1 cut(s) | 144 |
| StyD4I | CCNGG | 2 cut(s) | 311, 373 |
| StyI | CCWWGG | 2 cut(s) | 318, 555 |
| TaaI | ACNGT | 7 cut(s) | 550, 739, 910, 1100, 1306, 1358, 1476 |
| TaiI | ACGT | 4 cut(s) | 216, 237, 621, 894 |
| TaqI | TCGA | 2 cut(s) | 72, 1017 |
| TaqII | GACCGA | 1 cut(s) | 63 |
| TasI | AATT | 9 cut(s) | 496, 512, 758, 795, 804, 834, 880, 1056, 1166 |
| TatI | WGTACW | 6 cut(s) | 204, 592, 726, 905, 919, 1465 |
| TauI | GCSGC | 3 cut(s) | 85, 168, 277 |
| TfiI | GAWTC | 4 cut(s) | 503, 700, 1250, 1346 |
| Tru1I | TTAA | 5 cut(s) | 621, 654, 707, 1308, 1470 |
| Tru9I | TTAA | 5 cut(s) | 621, 654, 707, 1308, 1470 |
| TscAI | CASTG | 3 cut(s) | 555, 729, 1103 |
| TseI | GCWGC | 3 cut(s) | 370, 631, 1393 |
| TspDTI | ATGAA | 6 cut(s) | 578, 662, 794, 873, 882, 1359 |
| TspGWI | ACGGA | 2 cut(s) | 152, 1028 |
| TspRI | CASTG | 3 cut(s) | 555, 729, 1103 |
| Vha464I | CTTAAG | 1 cut(s) | 653 |
| VpaK11BI | GGWCC | 2 cut(s) | 315, 1201 |
| XapI | RAATTY | 4 cut(s) | 512, 758, 804, 880 |
| XceI | RCATGY | 1 cut(s) | 1086 |
| XhoI | CTCGAG | 1 cut(s) | 71 |
| XmiI | GTMKAC | 1 cut(s) | 282 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1119 |
| XspI | CTAG | 2 cut(s) | 897, 1205 |
| ZraI | GACGTC | 1 cut(s) | 235 |
| ZrmI | AGTACT | 2 cut(s) | 907, 1467 |