RchiOBHm_Chr7g0228461

Ran-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008588
Physical Location & Seq
Forward (+)
51809681 .. 51811211
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20466

Sequence Viewer

Length: 747 bp
ATGAGCACCAGCACCACCAACAACACCTCCACCACCGCCGATACCACCACCCACCGAGATCTCGGCCTGTGGTTCCTCGACCAATCGCGCCTCGGCTCCGTTCCCAGCCCCACCGCCATGGACGAGGACGAGGACTCCCCCACCGAGCTCAACACCCTCAACAGCTCCGGCGGCTTCCTCGTCGTCTCCCCCGATAAGCTCTCCGCCAGGTACACCAACATCAACCTTCACGGTCACGACGTCGGCGTCGTTCAGGCCAACAAGCCCGCTCCGGTCAAGCGCCTGGTCTACTACTTCGAGATTTACGTCAAGGACGCCGGCGCCAAGGGCCAGATTTCCATTGGATTCACTACTGAGAATTTTAAGATGCGGAGGCAGCCCGGATGGGAGGTAAATAGTTGTGGCTATCATGGGGATGATGGATTTCTGTACCGTGGACAAGGAAAGGGTGAGGCTTTTGGACCAACCTTCACATCTGATGATAGAGTTGGAGGTGGCATCAATTATGCATCACAGGAGTTCTTTTTCACTAAAAATGGAACTGTAGTGGGAACTGTGCCCAAGGACATGAAGGGTCCCTTATATCCTACCATTGCTGTACACAGCCAAAATGAGGAGGTGCAAGTCAACTTTGGGCAACAACCTTTTGCTTTTGATCTTAAGGCAAGATATACCAATCCTTCTTTTTCTTTTATTTTAGTAACCATGATACATTTATTCTGTGTTGTCTCTTTGTTCACATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLTH SPRY

Protein Analysis

248

Amino Acids

27.28

Weight (kDa)

5.65

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SPRY PF00622 97 - 214 1.3e-22 SPRY domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 245
AatII GACGTC 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 320
AccBSI CCGCTC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 288
AccII CGCG 1 cut(s) 88
AciI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
AcsI RAATTY 1 cut(s) 358
AcyI GRCGYC 4 cut(s) 240, 246, 315, 321
AdeI CACNNNGTG 1 cut(s) 744
AfaI GTAC 3 cut(s) 212, 431, 600
AfiI CCNNNNNNNGG 1 cut(s) 613
AflII CTTAAG 1 cut(s) 659
AjnI CCWGG 2 cut(s) 206, 282
AluBI AGCT 3 cut(s) 148, 165, 199
AluI AGCT 3 cut(s) 148, 165, 199
Alw21I GWGCWC 2 cut(s) 8, 150
Alw26I GTCTC 2 cut(s) 190, 733
AoxI GGCC 3 cut(s) 64, 255, 328
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 1 cut(s) 358
AspLEI GCGC 3 cut(s) 90, 282, 323
AspS9I GGNCC 3 cut(s) 328, 461, 575
AsuC2I CCSGG 1 cut(s) 381
AsuHPI GGTGA 1 cut(s) 461
AvaII GGWCC 2 cut(s) 461, 575
BaeGI GKGCMC 1 cut(s) 561
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 1 cut(s) 150
Bbv12I GWGCWC 2 cut(s) 8, 150
BbvI GCAGC 1 cut(s) 388
BccI CCATC 2 cut(s) 378, 413
BciT130I CCWGG 2 cut(s) 208, 284
BcnI CCSGG 1 cut(s) 381
BcoDI GTCTC 2 cut(s) 190, 733
BfmI CTRYAG 1 cut(s) 543
BfoI RGCGCY 2 cut(s) 283, 324
BfrI CTTAAG 1 cut(s) 659
BglII AGATCT 1 cut(s) 58
BisI GCNGC 2 cut(s) 172, 377
BlsI GCNGC 2 cut(s) 173, 378
Bme1390I CCNGG 3 cut(s) 208, 284, 381
Bme18I GGWCC 2 cut(s) 461, 575
BmgT120I GGNCC 3 cut(s) 328, 461, 575
BmiI GGNNCC 5 cut(s) 74, 97, 322, 576, 577
BmrFI CCNGG 3 cut(s) 208, 284, 381
BmsI GCATC 3 cut(s) 357, 507, 518
BpuMI CCSGG 1 cut(s) 381
BsaHI GRCGYC 4 cut(s) 240, 246, 315, 321
BsaJI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 4 cut(s) 11, 41, 119, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse118I RCCGGY 1 cut(s) 317
Bse3DI GCAATG 1 cut(s) 591
BseBI CCWGG 2 cut(s) 208, 284
BseDI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BseGI GGATG 2 cut(s) 389, 421
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMI GCAATG 1 cut(s) 591
BseMII CTCAG 1 cut(s) 345
BseRI GAGGAG 1 cut(s) 629
BseSI GKGCMC 1 cut(s) 561
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 104
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 3 cut(s) 66, 257, 330
BshNI GGYRCC 1 cut(s) 320
BsiHKAI GWGCWC 2 cut(s) 8, 150
BsiSI CCGG 4 cut(s) 168, 272, 318, 381
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 1 cut(s) 613
BsmAI GTCTC 2 cut(s) 190, 733
BsmBI CGTCTC 1 cut(s) 190
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 3 cut(s) 66, 257, 330
Bsp1286I GDGCHC 3 cut(s) 8, 150, 561
Bsp1407I TGTACA 1 cut(s) 598
Bsp143I GATC 2 cut(s) 58, 655
Bsp19I CCATGG 1 cut(s) 117
BspACI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
BspANI GGCC 3 cut(s) 66, 257, 330
BspCNI CTCAG 1 cut(s) 346
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 5 cut(s) 74, 97, 322, 576, 577
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 659
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 591
BsrFI RCCGGY 1 cut(s) 317
BsrGI TGTACA 1 cut(s) 598
BssAI RCCGGY 1 cut(s) 317
BssECI CCNNGG 5 cut(s) 91, 117, 324, 433, 561
BssMI GATC 2 cut(s) 58, 655
BssNI GRCGYC 4 cut(s) 240, 246, 315, 321
BssT1I CCWWGG 3 cut(s) 117, 324, 561
Bst2UI CCWGG 2 cut(s) 208, 284
Bst4CI ACNGT 4 cut(s) 233, 434, 544, 556
BstACI GRCGYC 4 cut(s) 240, 246, 315, 321
BstAFI CTTAAG 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 598
BstC8I GCNNGC 2 cut(s) 267, 319
BstDEI CTNAG 1 cut(s) 354
BstDSI CCRYGG 2 cut(s) 117, 433
BstF5I GGATG 2 cut(s) 389, 421
BstFNI CGCG 1 cut(s) 88
BstH2I RGCGCY 2 cut(s) 283, 324
BstHHI GCGC 3 cut(s) 90, 282, 323
BstKTI GATC 2 cut(s) 61, 658
BstMAI GTCTC 2 cut(s) 190, 733
BstMBI GATC 2 cut(s) 58, 655
BstMWI GCNNNNNNNGC 3 cut(s) 171, 327, 376
BstNI CCWGG 2 cut(s) 208, 284
BstSCI CCNGG 3 cut(s) 206, 282, 379
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 561
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 388
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 118
BstYI RGATCY 1 cut(s) 58
BsuRI GGCC 3 cut(s) 66, 257, 330
BtgI CCRYGG 2 cut(s) 117, 433
BtsCI GGATG 2 cut(s) 389, 421
Cac8I GCNNGC 2 cut(s) 267, 319
CfoI GCGC 3 cut(s) 90, 282, 323
Cfr10I RCCGGY 1 cut(s) 317
Cfr13I GGNCC 3 cut(s) 328, 461, 575
CseI GACGC 2 cut(s) 235, 323
Csp6I GTAC 3 cut(s) 211, 430, 599
CviAII CATG 4 cut(s) 118, 410, 568, 706
CviQI GTAC 3 cut(s) 211, 430, 599
DdeI CTNAG 1 cut(s) 354
DinI GGCGCC 1 cut(s) 322
DpnI GATC 2 cut(s) 60, 657
DpnII GATC 2 cut(s) 58, 655
DraIII CACNNNGTG 1 cut(s) 744
DrdI GACNNNNNNGTC 1 cut(s) 245
DseDI GACNNNNNNGTC 1 cut(s) 245
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 117, 324, 561
Eco24I GRGCYC 1 cut(s) 150
Eco47I GGWCC 2 cut(s) 461, 575
Eco53kI GAGCTC 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 206, 282
EcoT14I CCWWGG 3 cut(s) 117, 324, 561
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 1 cut(s) 150
EgeI GGCGCC 1 cut(s) 322
EheI GGCGCC 1 cut(s) 322
ErhI CCWWGG 3 cut(s) 117, 324, 561
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 4 cut(s) 121, 413, 571, 709
FaiI YATR 7 cut(s) 119, 411, 507, 569, 583, 672, 707
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FaqI GGGAC 1 cut(s) 561
FatI CATG 4 cut(s) 117, 409, 567, 705
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 172, 377
FokI GGATG 2 cut(s) 396, 428
FriOI GRGCYC 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 172, 377
GlaI GCGC 3 cut(s) 89, 281, 322
GluI GCNGC 2 cut(s) 172, 377
GsaI CCCAGC 1 cut(s) 108
HaeII RGCGCY 2 cut(s) 283, 324
HaeIII GGCC 3 cut(s) 66, 257, 330
HapII CCGG 4 cut(s) 168, 272, 318, 381
HgaI GACGC 2 cut(s) 235, 323
HhaI GCGC 3 cut(s) 90, 282, 323
Hin1I GRCGYC 4 cut(s) 240, 246, 315, 321
Hin1II CATG 4 cut(s) 121, 413, 571, 709
Hin6I GCGC 3 cut(s) 88, 280, 321
HinP1I GCGC 3 cut(s) 88, 280, 321
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 2 cut(s) 134, 345
HpaII CCGG 4 cut(s) 168, 272, 318, 381
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 6 cut(s) 213, 289, 437, 601, 628, 738
Hpy188I TCNGA 1 cut(s) 478
Hpy188III TCNNGA 2 cut(s) 236, 298
Hpy8I GTNNAC 6 cut(s) 213, 289, 437, 601, 628, 738
Hpy99I CGWCG 4 cut(s) 185, 242, 245, 251
HpyAV CCTTC 4 cut(s) 236, 478, 565, 690
HpyCH4III ACNGT 4 cut(s) 233, 434, 544, 556
HpyCH4IV ACGT 2 cut(s) 240, 306
HpyCH4V TGCA 2 cut(s) 509, 622
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 327, 376
HpyF3I CTNAG 1 cut(s) 354
HpySE526I ACGT 2 cut(s) 240, 306
Hsp92I GRCGYC 4 cut(s) 240, 246, 315, 321
Hsp92II CATG 4 cut(s) 121, 413, 571, 709
HspAI GCGC 3 cut(s) 88, 280, 321
KasI GGCGCC 1 cut(s) 320
KflI GGGWCCC 1 cut(s) 575
KroI GCCGGC 1 cut(s) 317
KroNI GCCGGC 1 cut(s) 319
Kzo9I GATC 2 cut(s) 58, 655
LmnI GCTCC 3 cut(s) 101, 170, 274
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 3 cut(s) 357, 507, 518
MaeII ACGT 2 cut(s) 240, 306
MaeIII GTNAC 2 cut(s) 233, 700
MalI GATC 2 cut(s) 60, 657
MbiI CCGCTC 1 cut(s) 269
MboI GATC 2 cut(s) 58, 655
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 3 cut(s) 8, 150, 561
MluCI AATT 2 cut(s) 358, 502
Mly113I GGCGCC 1 cut(s) 321
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 469
Mph1103I ATGCAT 1 cut(s) 511
MreI CGCCGGCG 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 317
MseI TTAA 2 cut(s) 363, 660
MslI CAYNNNNRTG 2 cut(s) 116, 414
MspCI CTTAAG 1 cut(s) 659
MspI CCGG 4 cut(s) 168, 272, 318, 381
MspR9I CCNGG 3 cut(s) 208, 284, 381
MvaI CCWGG 2 cut(s) 208, 284
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 3 cut(s) 171, 327, 376
NaeI GCCGGC 1 cut(s) 319
NarI GGCGCC 1 cut(s) 321
NciI CCSGG 1 cut(s) 381
NcoI CCATGG 1 cut(s) 117
NdeII GATC 2 cut(s) 58, 655
NgoMIV GCCGGC 1 cut(s) 317
NlaIII CATG 4 cut(s) 121, 413, 571, 709
NlaIV GGNNCC 5 cut(s) 74, 97, 322, 576, 577
NmeAIII GCCGAG 2 cut(s) 42, 72
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 511
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 237, 243, 246, 303
PdiI GCCGGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 345
PkrI GCNGC 2 cut(s) 173, 378
PleI GAGTC 1 cut(s) 128
PluTI GGCGCC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 575
Psp6I CCWGG 2 cut(s) 206, 282
PspFI CCCAGC 1 cut(s) 104
PspGI CCWGG 2 cut(s) 206, 282
PspN4I GGNNCC 5 cut(s) 74, 97, 322, 576, 577
PspPI GGNCC 3 cut(s) 328, 461, 575
PspPPI RGGWCCY 1 cut(s) 575
PsuI RGATCY 1 cut(s) 58
RsaI GTAC 3 cut(s) 212, 431, 600
RsaNI GTAC 3 cut(s) 211, 430, 599
RseI CAYNNNNRTG 2 cut(s) 116, 414
SacI GAGCTC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 363, 660
SatI GCNGC 2 cut(s) 172, 377
Sau3AI GATC 2 cut(s) 58, 655
Sau96I GGNCC 3 cut(s) 328, 461, 575
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 3 cut(s) 208, 284, 381
SduI GDGCHC 3 cut(s) 8, 150, 561
SfaNI GCATC 3 cut(s) 357, 507, 518
SfcI CTRYAG 1 cut(s) 543
SfoI GGCGCC 1 cut(s) 322
SgrAI CRCCGGYG 1 cut(s) 317
SinI GGWCC 2 cut(s) 461, 575
SmiMI CAYNNNNRTG 2 cut(s) 116, 414
SmlI CTYRAG 1 cut(s) 659
SmoI CTYRAG 1 cut(s) 659
Sse9I AATT 2 cut(s) 358, 502
SsiI CCGC 6 cut(s) 36, 114, 171, 204, 267, 370
SspDI GGCGCC 1 cut(s) 320
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 206, 282, 379
StyI CCWWGG 3 cut(s) 117, 324, 561
TaaI ACNGT 4 cut(s) 233, 434, 544, 556
TaiI ACGT 2 cut(s) 243, 309
TaqI TCGA 2 cut(s) 78, 297
TasI AATT 2 cut(s) 358, 502
TatI WGTACW 1 cut(s) 598
TauI GCSGC 1 cut(s) 174
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 2 cut(s) 363, 660
Tru9I TTAA 2 cut(s) 363, 660
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 584
TspGWI ACGGA 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 659
VpaK11BI GGWCC 2 cut(s) 461, 575
XapI RAATTY 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XmiI GTMKAC 1 cut(s) 288
ZraI GACGTC 1 cut(s) 241
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.