Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Forward (+)

13669425 .. 13671203

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G36310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGATTTTGGATGTTTTAAGAACTTTTTCTACTAGAACTCGAAATCTTCCAAGTTCTGGTTTTTATTCGATAAGTACTAGTATAATGCGAGATATCAAAGTCAAATCTGATTCTAAGGAGTTTCTAACATCATCTGATGAAGAAGAAGAATCAGTTTCCATTAGAGTGTCGTCTTCTTCTTCCTTGAGTAGTGTTAAATCGACGCCTGAGATTGAGAAAAAGTATGTTCATCGAGTTTACGATGCGATTGCTCCTCATTTTAGCTCTACTAGGTTTGCTAAGTGGCCTAAAGTTGCTGCCTTTCTCGAATCGTTACCGTCTGGATCGGTGATTCTCGATGCCGGTTGCGGTAACGGGAAGTATTTGGGGTTGAATCCTAGTTGTTTCTTCATAGGTTGTGATATAAGTCATCCTTTGATTAAAATCTGTTCGGATAAAGGGCAAGAGGTTTTGGTTGCAGATGCTGTTAATCTTCCTTATAGAGAGGAGTTTGGCGATGCAGCGATTTCGATAGCGGTTTTGCATCATTTGAGTACAGAGAATAGAAGGAAGAAAGCTATTGAAGAACTTGTTCGTGTTGTTAAGCCTGGTGGATTTGTTCTCATTACTGTTTGGGCTGCTGAACAGGAGGATACATCGTTGCTTACGAAATGGACACCTTTGTCTGCTAAGTATGTTGAGGAATGGGTTGGTCCAGGTAGTCCGATGAATAGTCCTCGTGTGAGGAACAATCCGTTCTTTAGTCTTGAGAGTATCCCAGAGACTGAGGTGAGTACAAAGGAGCAAAAGGTTGAGAACAGTCAGTTCATCGGTCTTGAAAGCATTCCAGAGAGCGAGGAGAGTACGAGAGAGCAGAAAGGTGAGAGTATTATTCCAGAAACCAAAGCTAGTATAGTAGAGCAAAAGGATGAGAAATCTGTTGAGGAGTCATTGGAGGCTCTGAAGAAGAGTCAACAAGAGTACTTTGTGCCATGGCATTTACCATACCACCGTGCTGAAGTGAGTGGTGCATCTGCGTCTGCACTTGCAAGTGGGCTTGCAAAGAAAGATGATAGAAAAGGAGCTGTTGTGTACAACAGATACTACCATGTCTTTAGCGAAGGCGAACTTGAAAGGTTGGCATCTGGAGTAGGCAATGCAATGATAGTTGATAGATTTTTCGACAAGTCGAATTGGTGTATTGTTCTTCAGAAAGAAGCTTTAAACCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

404

Amino Acids

44.96

Weight (kDa)

5.5

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	97 - 219	1.6e-08	Methyltransferase domain
Methyltransf_31	PF13847	107 - 217	1.6e-06	Methyltransferase domain
Methyltransf_25	PF13649	111 - 198	1.1e-12	Methyltransferase domain
Methyltransf_11	PF08241	112 - 202	4.3e-17	Methyltransferase domain
Methyltransf_12	PF08242	112 - 199	3.9e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	661
AccB7I	CCANNNNNTGG	1 cut(s)	56
AciI	CCGC	2 cut(s)	348, 515
AclWI	GGATC	1 cut(s)	331
AcuI	CTGAAG	3 cut(s)	962, 1017, 1172
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	6 cut(s)	76, 535, 775, 844, 962, 1073
AfiI	CCNNNNNNNGG	1 cut(s)	56
AgsI	TTSAA	4 cut(s)	373, 563, 818, 1112
AhlI	ACTAGT	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	586, 694
AluBI	AGCT	5 cut(s)	264, 557, 887, 1064, 1199
AluI	AGCT	5 cut(s)	264, 557, 887, 1064, 1199
Alw26I	GTCTC	1 cut(s)	755
AlwI	GGATC	1 cut(s)	331
AlwNI	CAGNNNCTG	2 cut(s)	464, 764
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	3 cut(s)	296, 500, 617
Asp700I	GAANNNNTTC	3 cut(s)	25, 570, 822
AspS9I	GGNCC	1 cut(s)	692
AsuHPI	GGTGA	3 cut(s)	340, 781, 872
AvaII	GGWCC	1 cut(s)	692
BauI	CACGAG	1 cut(s)	717
BbsI	GAAGAC	1 cut(s)	165
BbvI	GCAGC	3 cut(s)	283, 512, 604
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 489, 523
BciT130I	CCWGG	2 cut(s)	588, 696
BciVI	GTATCC	2 cut(s)	625, 764
BcoDI	GTCTC	1 cut(s)	755
BcuI	ACTAGT	1 cut(s)	77
BfaI	CTAG	5 cut(s)	33, 78, 270, 378, 888
BfuI	GTATCC	2 cut(s)	625, 764
BisI	GCNGC	3 cut(s)	297, 501, 618
BlsI	GCNGC	3 cut(s)	298, 502, 619
BmcAI	AGTACT	2 cut(s)	76, 962
Bme1390I	CCNGG	2 cut(s)	588, 696
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	1 cut(s)	692
BmrFI	CCNGG	2 cut(s)	588, 696
BmsI	GCATC	7 cut(s)	232, 328, 451, 487, 532, 1019, 1130
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	1 cut(s)	1146
BpuEI	CTTGAG	2 cut(s)	205, 767
BsaBI	GATNNNNATC	1 cut(s)	422
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	971
BsaXI	ACNNNNNCTCC	2 cut(s)	1053, 1083
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse118I	RCCGGY	1 cut(s)	341
Bse3DI	GCAATG	2 cut(s)	1141, 1146
Bse8I	GATNNNNATC	1 cut(s)	422
BseBI	CCWGG	2 cut(s)	588, 696
BseDI	CCNNGG	1 cut(s)	971
BseGI	GGATG	3 cut(s)	16, 409, 913
BseJI	GATNNNNATC	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseMI	GCAATG	2 cut(s)	1141, 1146
BseMII	CTCAG	2 cut(s)	198, 756
BseRI	GAGGAG	4 cut(s)	243, 500, 851, 938
BseXI	GCAGC	3 cut(s)	283, 512, 604
BsgI	GTGCAG	1 cut(s)	1005
BshFI	GGCC	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	342
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	1 cut(s)	755
BsmI	GAATGC	1 cut(s)	822
BsnI	GGCC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	1071
Bsp143I	GATC	1 cut(s)	323
Bsp19I	CCATGG	1 cut(s)	971
BspACI	CCGC	2 cut(s)	348, 515
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	199, 757
BspPI	GGATC	1 cut(s)	331
BsrDI	GCAATG	2 cut(s)	1141, 1146
BsrFI	RCCGGY	1 cut(s)	341
BsrGI	TGTACA	1 cut(s)	1071
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	971
BssMI	GATC	1 cut(s)	323
BssNI	GRCGYC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	971
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	2 cut(s)	588, 696
Bst4CI	ACNGT	4 cut(s)	318, 610, 800, 992
Bst6I	CTCTTC	1 cut(s)	941
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	1071
BstC8I	GCNNGC	1 cut(s)	1038
BstDEI	CTNAG	5 cut(s)	114, 207, 279, 669, 765
BstDSI	CCRYGG	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	16, 409, 913
BstKTI	GATC	1 cut(s)	326
BstMAI	GTCTC	1 cut(s)	755
BstMBI	GATC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	588, 696
BstSCI	CCNGG	2 cut(s)	586, 694
BstV1I	GCAGC	3 cut(s)	283, 512, 604
BstV2I	GAAGAC	1 cut(s)	165
BsuI	GTATCC	2 cut(s)	625, 764
BsuRI	GGCC	1 cut(s)	286
BtgI	CCRYGG	1 cut(s)	971
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	3 cut(s)	16, 409, 913
Cac8I	GCNNGC	1 cut(s)	1038
CaiI	CAGNNNCTG	2 cut(s)	464, 764
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	692
CseI	GACGC	2 cut(s)	211, 1005
Csp6I	GTAC	6 cut(s)	75, 534, 774, 843, 961, 1072
CviAII	CATG	2 cut(s)	972, 1088
CviQI	GTAC	6 cut(s)	75, 534, 774, 843, 961, 1072
DdeI	CTNAG	5 cut(s)	114, 207, 279, 669, 765
DpnI	GATC	1 cut(s)	325
DpnII	GATC	1 cut(s)	323
DraI	TTTAAA	1 cut(s)	1203
DrdI	GACNNNNNNGTC	1 cut(s)	661
DseDI	GACNNNNNNGTC	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	941
EarI	CTCTTC	1 cut(s)	941
Eco130I	CCWWGG	1 cut(s)	971
Eco32I	GATATC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	692
Eco57I	CTGAAG	3 cut(s)	962, 1017, 1172
EcoRII	CCWGG	2 cut(s)	586, 694
EcoRV	GATATC	1 cut(s)	94
EcoT14I	CCWWGG	1 cut(s)	971
ErhI	CCWWGG	1 cut(s)	971
FaeI	CATG	2 cut(s)	975, 1091
FalI	AAGNNNNNCTT	4 cut(s)	397, 429, 1092, 1124
FatI	CATG	2 cut(s)	971, 1087
Fnu4HI	GCNGC	3 cut(s)	297, 501, 618
FokI	GGATG	3 cut(s)	23, 396, 920
Fsp4HI	GCNGC	3 cut(s)	297, 501, 618
FspBI	CTAG	5 cut(s)	33, 78, 270, 378, 888
GluI	GCNGC	3 cut(s)	297, 501, 618
GsuI	CTGGAG	1 cut(s)	1146
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	342
HgaI	GACGC	2 cut(s)	211, 1005
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	975, 1091
HincII	GTYRAC	1 cut(s)	953
HindII	GTYRAC	1 cut(s)	953
HindIII	AAGCTT	1 cut(s)	1197
HinfI	GANTC	7 cut(s)	110, 149, 308, 331, 373, 926, 949
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	3 cut(s)	340, 781, 872
Hpy166II	GTNNAC	3 cut(s)	238, 953, 1072
Hpy188I	TCNGA	6 cut(s)	109, 136, 433, 705, 942, 1191
Hpy188III	TCNNGA	8 cut(s)	305, 321, 335, 746, 815, 827, 875, 1125
Hpy8I	GTNNAC	3 cut(s)	238, 953, 1072
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	540, 1094
HpyCH4III	ACNGT	4 cut(s)	318, 610, 800, 992
HpyCH4V	TGCA	8 cut(s)	458, 500, 523, 1010, 1022, 1028, 1040, 1139
HpyF3I	CTNAG	5 cut(s)	114, 207, 279, 669, 765
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	975, 1091
Kzo9I	GATC	1 cut(s)	323
LmnI	GCTCC	3 cut(s)	256, 781, 1061
Lsp1109I	GCAGC	3 cut(s)	283, 512, 604
LweI	GCATC	7 cut(s)	232, 328, 451, 487, 532, 1019, 1130
MaeI	CTAG	5 cut(s)	33, 78, 270, 378, 888
MaeIII	GTNAC	2 cut(s)	312, 350
MalI	GATC	1 cut(s)	325
MboI	GATC	1 cut(s)	323
MluCI	AATT	1 cut(s)	1171
MlyI	GAGTC	2 cut(s)	935, 958
MroXI	GAANNNNTTC	3 cut(s)	25, 570, 822
MseI	TTAA	6 cut(s)	17, 195, 420, 468, 582, 1202
MslI	CAYNNNNRTG	1 cut(s)	164
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	588, 696
Mva1269I	GAATGC	1 cut(s)	822
MvaI	CCWGG	2 cut(s)	588, 696
NcoI	CCATGG	1 cut(s)	971
NdeII	GATC	1 cut(s)	323
NlaIII	CATG	2 cut(s)	975, 1091
PcsI	WCGNNNNNNNCGW	1 cut(s)	644
PctI	GAATGC	1 cut(s)	822
PdmI	GAANNNNTTC	3 cut(s)	25, 570, 822
PfeI	GAWTC	5 cut(s)	110, 149, 308, 331, 373
PflMI	CCANNNNNTGG	1 cut(s)	56
PkrI	GCNGC	3 cut(s)	298, 502, 619
PleI	GAGTC	2 cut(s)	934, 957
PpsI	GAGTC	2 cut(s)	934, 957
Psp6I	CCWGG	2 cut(s)	586, 694
PspGI	CCWGG	2 cut(s)	586, 694
PspPI	GGNCC	1 cut(s)	692
PsrI	GAACNNNNNNTAC	2 cut(s)	13, 45
PstNI	CAGNNNCTG	2 cut(s)	464, 764
RsaI	GTAC	6 cut(s)	76, 535, 775, 844, 962, 1073
RsaNI	GTAC	6 cut(s)	75, 534, 774, 843, 961, 1072
RseI	CAYNNNNRTG	1 cut(s)	164
SaqAI	TTAA	6 cut(s)	17, 195, 420, 468, 582, 1202
SatI	GCNGC	3 cut(s)	297, 501, 618
Sau3AI	GATC	1 cut(s)	323
Sau96I	GGNCC	1 cut(s)	692
ScaI	AGTACT	2 cut(s)	76, 962
SchI	GAGTC	2 cut(s)	935, 958
ScrFI	CCNGG	2 cut(s)	588, 696
SfaNI	GCATC	7 cut(s)	232, 328, 451, 487, 532, 1019, 1130
SinI	GGWCC	1 cut(s)	692
SmiMI	CAYNNNNRTG	1 cut(s)	164
SmlI	CTYRAG	2 cut(s)	184, 746
SmoI	CTYRAG	2 cut(s)	184, 746
SpeI	ACTAGT	1 cut(s)	77
Sse9I	AATT	1 cut(s)	1171
SsiI	CCGC	2 cut(s)	348, 515
SspMI	CTAG	5 cut(s)	33, 78, 270, 378, 888
StyD4I	CCNGG	2 cut(s)	586, 694
StyI	CCWWGG	1 cut(s)	971
TaaI	ACNGT	4 cut(s)	318, 610, 800, 992
TaqI	TCGA	9 cut(s)	40, 68, 200, 232, 306, 336, 509, 1161, 1169
TaqII	GACCGA	1 cut(s)	800
TasI	AATT	1 cut(s)	1171
TatI	WGTACW	5 cut(s)	74, 533, 773, 960, 1071
TfiI	GAWTC	5 cut(s)	110, 149, 308, 331, 373
Tru1I	TTAA	6 cut(s)	17, 195, 420, 468, 582, 1202
Tru9I	TTAA	6 cut(s)	17, 195, 420, 468, 582, 1202
TseI	GCWGC	3 cut(s)	296, 500, 617
TspDTI	ATGAA	5 cut(s)	153, 218, 379, 722, 796
TspGWI	ACGGA	1 cut(s)	723
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	692
XmnI	GAANNNNTTC	3 cut(s)	25, 570, 822
XspI	CTAG	5 cut(s)	33, 78, 270, 378, 888
ZrmI	AGTACT	2 cut(s)	76, 962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.