Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

14479251 .. 14481341

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTCTGCTGCATCAGGAATCTTCAGTACTATGAGAGAAGTCAAGGTTAAAGGTGCGTCTGGTTTTTGTTCTCTGGATTCTGGTGAAGAATCTCAGATCCTACAATCTGAATCAGCTAGTGACAGCCATAGACAGGCATCCTTAAATGTGCAGTTCACTCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTATAGCACCTCATTTCAGTTCAACCCGGTTTGCTAAGTGGCCGAAAGTAGCCAATTTTCTATCTTCCTTACCTTCAGGATCTCTTGTTCTTGATGCAGGATGTGGGAATGGGAAGTACTTGGGATTTAATCCTGATTGTTTTTTCATTGGATGTGATATAAGTGCTCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTGTTGGTTGCAGATGCCGTAGACCTTCCATATAGAACTGGTTTTGGTGATGCAGCTATATCCATAGCTGTATTACATCATCTAAGTACGGAGGGTAGGAGGAAGAAAGCAATCGAAGAATTGATCCGAGTTGTGAGAAAGGGTGGCTTAGTTCTAATAACAGTTTGGGCTGTAGAACAAGAAGATAAATCATTAGTTGCAAAATGGACTCCACTTACCGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGTCCTCATGTTCGTAGCCCTTCATCTCGCACATTGCAAAGCATCCCAGAAACAGAGGAGAGTAGTTTGGGAGAGCGTAAGAAAGAGTCCGACCACAGTGCTACACAGAGTTTGCAAGAGAAAACCTCTCAAAGTGAGAGTTATTCGGGGACTTCTTGTGATGTGAAAGATGCAAGCGATCAACAAGAATATTTTGTACCCTGGCACTTGCCATATCACCGTGCTGAAGTAAGTGGTGCTTCTGCTTGCGCTCTTGCAAATGGCCTTGCAAAGAAAGATGATAAAAAGGGTGCTGTTGTGTACAACAGATATTACCATGTTTTCAATGAAGGCGAGCTTGAAAGATTGTTTATCAACAAATTAATAAAATTGTACATATATTTCTGTTATGTCTCATTGATACAGTTGTGCGGTGTTGTTGGCTTGCTGAAACTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

365

Amino Acids

40.09

Weight (kDa)

6.32

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	75 - 230	1e-06	Methyltransferase domain
Methyltransf_31	PF13847	93 - 202	2.3e-06	Methyltransferase domain
Methyltransf_25	PF13649	96 - 183	1.8e-11	Methyltransferase domain
Methyltransf_11	PF08241	97 - 187	3.9e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
AccI	GTMKAC	1 cut(s)	423
AciI	CCGC	1 cut(s)	1065
AclWI	GGATC	3 cut(s)	91, 286, 520
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	378
AcuI	CTGAAG	3 cut(s)	7, 258, 900
AfaI	GTAC	6 cut(s)	28, 317, 490, 852, 956, 1028
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	222, 979, 995
AjnI	CCWGG	2 cut(s)	649, 854
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	4 cut(s)	116, 458, 470, 991
AluI	AGCT	4 cut(s)	116, 458, 470, 991
Alw21I	GWGCWC	1 cut(s)	367
Alw26I	GTCTC	1 cut(s)	1051
AlwI	GGATC	3 cut(s)	91, 286, 520
AoxI	GGCC	2 cut(s)	239, 916
ApeKI	GCWGC	2 cut(s)	8, 455
ApoI	RAATTY	1 cut(s)	378
AseI	ATTAAT	1 cut(s)	1016
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	647
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	95, 461, 863
AvaII	GGWCC	1 cut(s)	647
BaeI	ACNNNNGTAYC	2 cut(s)	1046, 1079
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	1 cut(s)	192
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	734, 768
BciT130I	CCWGG	2 cut(s)	651, 856
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	1051
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	201, 573
BisI	GCNGC	2 cut(s)	9, 456
BlsI	GCNGC	2 cut(s)	10, 457
BmcAI	AGTACT	2 cut(s)	28, 317
Bme1390I	CCNGG	3 cut(s)	226, 651, 856
Bme18I	GGWCC	1 cut(s)	647
BmgT120I	GGNCC	1 cut(s)	647
BmrFI	CCNGG	3 cut(s)	226, 651, 856
BmsI	GCATC	8 cut(s)	20, 146, 187, 283, 406, 442, 705, 814
BplI	GAGNNNNNCTC	2 cut(s)	764, 796
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	686
BseBI	CCWGG	2 cut(s)	651, 856
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	4 cut(s)	137, 305, 356, 696
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	686
BseMII	CTCAG	1 cut(s)	107
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	2 cut(s)	357, 725
BseXI	GCAGC	1 cut(s)	467
BsgI	GTGCAG	2 cut(s)	170, 405
BshFI	GGCC	2 cut(s)	241, 918
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	817
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	1051
BsmFI	GGGAC	1 cut(s)	817
BsnI	GGCC	2 cut(s)	241, 918
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp1407I	TGTACA	2 cut(s)	954, 1026
Bsp143I	GATC	4 cut(s)	96, 278, 525, 832
BspACI	CCGC	1 cut(s)	1065
BspANI	GGCC	2 cut(s)	241, 918
BspCNI	CTCAG	1 cut(s)	106
BspPI	GGATC	3 cut(s)	91, 286, 520
BsrDI	GCAATG	1 cut(s)	686
BsrGI	TGTACA	2 cut(s)	954, 1026
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	4 cut(s)	96, 278, 525, 832
Bst2UI	CCWGG	2 cut(s)	651, 856
Bst4CI	ACNGT	4 cut(s)	565, 752, 875, 1059
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	2 cut(s)	954, 1026
BstC8I	GCNNGC	4 cut(s)	829, 901, 989, 1079
BstDEI	CTNAG	4 cut(s)	93, 234, 485, 550
BstF5I	GGATG	4 cut(s)	137, 305, 356, 696
BstHHI	GCGC	1 cut(s)	905
BstKTI	GATC	4 cut(s)	99, 281, 528, 835
BstMAI	GTCTC	1 cut(s)	1051
BstMBI	GATC	4 cut(s)	96, 278, 525, 832
BstNI	CCWGG	2 cut(s)	651, 856
BstSCI	CCNGG	3 cut(s)	224, 649, 854
BstSFI	CTRYAG	2 cut(s)	201, 573
BstV1I	GCAGC	1 cut(s)	467
BstX2I	RGATCY	2 cut(s)	96, 278
BstYI	RGATCY	2 cut(s)	96, 278
BsuRI	GGCC	2 cut(s)	241, 918
BtsCI	GGATG	4 cut(s)	137, 305, 356, 696
BtsIMutI	CAGTG	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	829, 901, 989, 1079
CfoI	GCGC	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	647
CseI	GACGC	1 cut(s)	45
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	6 cut(s)	27, 316, 489, 851, 955, 1027
CviAII	CATG	4 cut(s)	188, 398, 662, 971
CviQI	GTAC	6 cut(s)	27, 316, 489, 851, 955, 1027
DdeI	CTNAG	4 cut(s)	93, 234, 485, 550
DpnI	GATC	4 cut(s)	98, 280, 527, 834
DpnII	GATC	4 cut(s)	96, 278, 525, 832
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco47I	GGWCC	1 cut(s)	647
Eco57I	CTGAAG	3 cut(s)	7, 258, 900
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	649, 854
FaeI	CATG	4 cut(s)	191, 401, 665, 974
FalI	AAGNNNNNCTT	6 cut(s)	533, 565, 877, 909, 975, 1007
FaqI	GGGAC	1 cut(s)	817
FatI	CATG	4 cut(s)	187, 397, 661, 970
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	9, 456
FokI	GGATG	4 cut(s)	124, 312, 363, 683
Fsp4HI	GCNGC	2 cut(s)	9, 456
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	2 cut(s)	9, 456
HaeIII	GGCC	2 cut(s)	241, 918
HapII	CCGG	1 cut(s)	226
HgaI	GACGC	1 cut(s)	45
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	4 cut(s)	191, 401, 665, 974
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HinfI	GANTC	6 cut(s)	18, 77, 89, 110, 610, 740
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	3 cut(s)	95, 461, 863
Hpy166II	GTNNAC	3 cut(s)	156, 424, 955
Hpy188I	TCNGA	4 cut(s)	96, 109, 530, 745
Hpy188III	TCNNGA	6 cut(s)	15, 74, 161, 276, 290, 332
Hpy8I	GTNNAC	3 cut(s)	156, 424, 955
HpyAV	CCTTC	4 cut(s)	282, 437, 684, 977
HpyCH4III	ACNGT	4 cut(s)	565, 752, 875, 1059
HpyF3I	CTNAG	4 cut(s)	93, 234, 485, 550
Hsp92II	CATG	4 cut(s)	191, 401, 665, 974
HspAI	GCGC	1 cut(s)	903
Kzo9I	GATC	4 cut(s)	96, 278, 525, 832
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	8 cut(s)	20, 146, 187, 283, 406, 442, 705, 814
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	4 cut(s)	98, 280, 527, 834
MboI	GATC	4 cut(s)	96, 278, 525, 832
MboII	GAAGA	7 cut(s)	13, 98, 255, 517, 530, 596, 647
MflI	RGATCY	2 cut(s)	96, 278
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	6 cut(s)	253, 378, 521, 1013, 1022, 1090
MlyI	GAGTC	2 cut(s)	604, 749
MmeI	TCCRAC	1 cut(s)	768
MnlI	CCTC	8 cut(s)	219, 378, 386, 487, 495, 669, 703, 790
MseI	TTAA	5 cut(s)	48, 143, 327, 1016, 1093
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	3 cut(s)	226, 651, 856
MvaI	CCWGG	2 cut(s)	651, 856
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	4 cut(s)	96, 278, 525, 832
NlaIII	CATG	4 cut(s)	191, 401, 665, 974
NmuCI	GTSAC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	18, 77, 89, 110
PkrI	GCNGC	2 cut(s)	10, 457
PleI	GAGTC	2 cut(s)	604, 748
PpsI	GAGTC	2 cut(s)	604, 748
PpuMI	RGGWCCY	1 cut(s)	647
PshBI	ATTAAT	1 cut(s)	1016
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	649, 854
PspGI	CCWGG	2 cut(s)	649, 854
PspPI	GGNCC	1 cut(s)	647
PspPPI	RGGWCCY	1 cut(s)	647
PsuI	RGATCY	2 cut(s)	96, 278
RsaI	GTAC	6 cut(s)	28, 317, 490, 852, 956, 1028
RsaNI	GTAC	6 cut(s)	27, 316, 489, 851, 955, 1027
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	5 cut(s)	48, 143, 327, 1016, 1093
SatI	GCNGC	2 cut(s)	9, 456
Sau3AI	GATC	4 cut(s)	96, 278, 525, 832
Sau96I	GGNCC	1 cut(s)	647
ScaI	AGTACT	2 cut(s)	28, 317
SchI	GAGTC	2 cut(s)	604, 749
ScrFI	CCNGG	3 cut(s)	226, 651, 856
SduI	GDGCHC	1 cut(s)	367
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	8 cut(s)	20, 146, 187, 283, 406, 442, 705, 814
SfcI	CTRYAG	2 cut(s)	201, 573
SinI	GGWCC	1 cut(s)	647
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse9I	AATT	6 cut(s)	253, 378, 521, 1013, 1022, 1090
SsiI	CCGC	1 cut(s)	1065
SspI	AATATT	1 cut(s)	845
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	224, 649, 854
TaaI	ACNGT	4 cut(s)	565, 752, 875, 1059
TaqI	TCGA	1 cut(s)	516
TasI	AATT	6 cut(s)	253, 378, 521, 1013, 1022, 1090
TatI	WGTACW	4 cut(s)	26, 315, 954, 1026
TfiI	GAWTC	4 cut(s)	18, 77, 89, 110
Tru1I	TTAA	5 cut(s)	48, 143, 327, 1016, 1093
Tru9I	TTAA	5 cut(s)	48, 143, 327, 1016, 1093
TscAI	CASTG	1 cut(s)	757
TseFI	GTSAC	1 cut(s)	119
TseI	GCWGC	2 cut(s)	8, 455
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	4 cut(s)	334, 414, 666, 996
TspGWI	ACGGA	1 cut(s)	506
TspRI	CASTG	1 cut(s)	757
VpaK11BI	GGWCC	1 cut(s)	647
VspI	ATTAAT	1 cut(s)	1016
XapI	RAATTY	1 cut(s)	378
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	1 cut(s)	117
ZrmI	AGTACT	2 cut(s)	28, 317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.