Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

3902608 .. 3905474

Gene Structure 2867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGTCTGCTGGATCAGGAATCTTCCGTACAATGAGAGAAGTCAAGGTAAAAGGTGTTTCGGGGTTGTGTACTCTTGATTCTGATAATGAATCGCAAATCCTACAATCTGAATCGGCTAGTGTCAGCCAGAGATGTTCATCTCCAAATGTGCAGTCCACGCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTATCGCACCCCATTTCAGTTCCACCCGGTTTGCTAAGTGGCCAAAAGTAGCCAATTTTTTATCTTCCTTACCTGCAGGAACTCTTGTGCTCGATGCAGGATGTGGAAATGGGAAGTACTTGGGATTTAATCCCAATTGTTTTTCCATAGGGTGTGACATAAGTGCTCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTTTTGGTTGCAGATGCTCTAGTTCTACCCTATAGAACTGGTTTTGGTGATGCAGCTATCTCTATAGCTGTATTACATCATCTGAGTACAGAGAGCAGGAGGAAAAAAGCAATCGAAGAGTTAGTCCGAGTTGTGAAAAAGGGTGGTCTAGTTCTAATAACAGTTTGGGCTGTGGAACAAGAAGATAAAGCATTAGTTTCTAAATGGACCCCACTCACCGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGTCCTCATGTGCGTAGTCTGTCGTCCCGCACATTGGAAAGCATTCCAGAAACAGAGGATAGAATTTTGGGAGAGAATGTGAAACATTCCAACCAGAGTTCTGTGCAGACTTTGCAACAAATGCGCTATAAATGGTGCTATGAAAGTAATACAAGGGCTTCAGATGATATAAAGAATACAAATAATCAACAAGAATATTTCATCCCCTGGCACTTGCCATATCATCGTGCTGAAATAAATGGTGCTTCGGCTTGTGCTGTTGCAAATGGCCTTGCAAAGAAAGATGATAAGAAGGGTGCTGTAGTGTACAACAGATATTACCATGTTTTTAGTGAAGGCGAGCTTGAAAGGCTGGTATCTGGTATGGATGATGCTGTAATTGTTGATCGATTTTTTGACAAATCCAACTGGTGTATTGTCCTTGAGAAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

364

Amino Acids

40.3

Weight (kDa)

6.83

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	75 - 232	7.8e-06	Methyltransferase domain
Methyltransf_31	PF13847	93 - 205	8.1e-06	Methyltransferase domain
Methyltransf_25	PF13649	96 - 183	4.2e-11	Methyltransferase domain
Methyltransf_11	PF08241	97 - 187	2.7e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
Acc36I	ACCTGC	1 cut(s)	280
AciI	CCGC	1 cut(s)	682
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	2 cut(s)	378, 717
AcuI	CTGAAG	1 cut(s)	798
AfaI	GTAC	5 cut(s)	28, 70, 317, 490, 962
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	1 cut(s)	1001
AjnI	CCWGG	2 cut(s)	649, 860
AluBI	AGCT	3 cut(s)	458, 470, 997
AluI	AGCT	3 cut(s)	458, 470, 997
Alw21I	GWGCWC	2 cut(s)	291, 367
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	2 cut(s)	239, 922
ApeKI	GCWGC	1 cut(s)	455
ApoI	RAATTY	2 cut(s)	378, 717
ArsI	GACNNNNNNTTYG	4 cut(s)	137, 169, 510, 542
Asp700I	GAANNNNTTC	1 cut(s)	696
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	609, 647
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	461, 610
AvaII	GGWCC	2 cut(s)	609, 647
BalI	TGGCCA	1 cut(s)	241
Bbv12I	GWGCWC	2 cut(s)	291, 367
BbvI	GCAGC	1 cut(s)	467
BccI	CCATC	1 cut(s)	192
BciT130I	CCWGG	2 cut(s)	651, 862
BcnI	CCSGG	1 cut(s)	226
BfaI	CTAG	3 cut(s)	117, 422, 551
BfmI	CTRYAG	4 cut(s)	273, 433, 465, 954
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	1 cut(s)	456
BlsI	GCNGC	1 cut(s)	457
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	3 cut(s)	226, 651, 862
Bme18I	GGWCC	2 cut(s)	609, 647
BmgT120I	GGNCC	2 cut(s)	609, 647
BmiI	GGNNCC	1 cut(s)	611
BmrFI	CCNGG	3 cut(s)	226, 651, 862
BmsI	GCATC	5 cut(s)	187, 283, 406, 442, 1015
BpuMI	CCSGG	1 cut(s)	226
Bsa29I	ATCGAT	1 cut(s)	1042
BsaBI	GATNNNNATC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	860
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	2 cut(s)	445, 1067
Bse8I	GATNNNNATC	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	651, 862
BseCI	ATCGAT	1 cut(s)	1042
BseDI	CCNNGG	1 cut(s)	860
BseGI	GGATG	3 cut(s)	305, 855, 1027
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	476
BseNI	ACTGG	2 cut(s)	445, 1067
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	1 cut(s)	467
BsgI	GTGCAG	3 cut(s)	170, 405, 779
BshFI	GGCC	2 cut(s)	241, 924
BshVI	ATCGAT	1 cut(s)	1042
BsiHKAI	GWGCWC	2 cut(s)	291, 367
BsiSI	CCGG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	2 cut(s)	241, 924
Bsp1286I	GDGCHC	2 cut(s)	291, 367
Bsp1407I	TGTACA	1 cut(s)	960
Bsp143I	GATC	2 cut(s)	11, 1039
BspACI	CCGC	1 cut(s)	682
BspANI	GGCC	2 cut(s)	241, 924
BspCNI	CTCAG	1 cut(s)	477
BspDI	ATCGAT	1 cut(s)	1042
BspLI	GGNNCC	1 cut(s)	611
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	19
BsrGI	TGTACA	1 cut(s)	960
BsrI	ACTGG	2 cut(s)	445, 1067
BssECI	CCNNGG	1 cut(s)	860
BssMI	GATC	2 cut(s)	11, 1039
Bst2UI	CCWGG	2 cut(s)	651, 862
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	513, 630
BstAPI	GCANNNNNTGC	2 cut(s)	766, 775
BstAUI	TGTACA	1 cut(s)	960
BstC8I	GCNNGC	1 cut(s)	995
BstDEI	CTNAG	2 cut(s)	234, 485
BstF5I	GGATG	3 cut(s)	305, 855, 1027
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	2 cut(s)	14, 1042
BstMBI	GATC	2 cut(s)	11, 1039
BstMWI	GCNNNNNNNGC	4 cut(s)	157, 766, 775, 1003
BstNI	CCWGG	2 cut(s)	651, 862
BstSCI	CCNGG	3 cut(s)	224, 649, 860
BstSFI	CTRYAG	4 cut(s)	273, 433, 465, 954
BstV1I	GCAGC	1 cut(s)	467
Bsu15I	ATCGAT	1 cut(s)	1042
BsuRI	GGCC	2 cut(s)	241, 924
BsuTUI	ATCGAT	1 cut(s)	1042
BtsCI	GGATG	3 cut(s)	305, 855, 1027
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	995
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	609, 647
ClaI	ATCGAT	1 cut(s)	1042
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	5 cut(s)	27, 69, 316, 489, 961
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	188, 398, 662, 977
CviQI	GTAC	5 cut(s)	27, 69, 316, 489, 961
DdeI	CTNAG	2 cut(s)	234, 485
DpnI	GATC	2 cut(s)	13, 1041
DpnII	GATC	2 cut(s)	11, 1039
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	2 cut(s)	513, 630
EarI	CTCTTC	2 cut(s)	513, 630
Eco47I	GGWCC	2 cut(s)	609, 647
Eco57I	CTGAAG	1 cut(s)	798
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	2 cut(s)	649, 860
FaeI	CATG	4 cut(s)	191, 401, 665, 980
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	4 cut(s)	187, 397, 661, 976
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	1 cut(s)	456
FokI	GGATG	3 cut(s)	312, 842, 1034
Fsp4HI	GCNGC	1 cut(s)	456
FspBI	CTAG	3 cut(s)	117, 422, 551
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	1 cut(s)	456
HaeIII	GGCC	2 cut(s)	241, 924
HapII	CCGG	1 cut(s)	226
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	191, 401, 665, 980
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	4 cut(s)	18, 77, 89, 110
HpaII	CCGG	1 cut(s)	226
HphI	GGTGA	2 cut(s)	461, 610
Hpy166II	GTNNAC	3 cut(s)	69, 156, 961
Hpy188I	TCNGA	5 cut(s)	82, 109, 486, 530, 817
Hpy188III	TCNNGA	3 cut(s)	15, 74, 701
Hpy8I	GTNNAC	3 cut(s)	69, 156, 961
HpyAV	CCTTC	2 cut(s)	940, 983
HpyCH4III	ACNGT	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	4 cut(s)	157, 766, 775, 1003
HpyF3I	CTNAG	2 cut(s)	234, 485
Hsp92II	CATG	4 cut(s)	191, 401, 665, 980
HspAI	GCGC	1 cut(s)	778
Kzo9I	GATC	2 cut(s)	11, 1039
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	1 cut(s)	467
LweI	GCATC	5 cut(s)	187, 283, 406, 442, 1015
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	3 cut(s)	117, 422, 551
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	2 cut(s)	13, 1041
MboI	GATC	2 cut(s)	11, 1039
MboII	GAAGA	5 cut(s)	13, 255, 530, 596, 647
MfeI	CAATTG	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	291, 367
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	5 cut(s)	253, 334, 378, 717, 1032
MluNI	TGGCCA	1 cut(s)	241
MmeI	TCCRAC	2 cut(s)	768, 1083
MnlI	CCTC	5 cut(s)	378, 386, 495, 669, 703
Mox20I	TGGCCA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	696
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	1 cut(s)	226
MspR9I	CCNGG	3 cut(s)	226, 651, 862
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	2 cut(s)	651, 862
MwoI	GCNNNNNNNGC	4 cut(s)	157, 766, 775, 1003
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	2 cut(s)	11, 1039
NlaIII	CATG	4 cut(s)	191, 401, 665, 980
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	353
PctI	GAATGC	1 cut(s)	696
PdmI	GAANNNNTTC	1 cut(s)	696
PfeI	GAWTC	4 cut(s)	18, 77, 89, 110
PkrI	GCNGC	1 cut(s)	457
PpuMI	RGGWCCY	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	2 cut(s)	649, 860
PspGI	CCWGG	2 cut(s)	649, 860
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	609, 647
PspPPI	RGGWCCY	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	277
RsaI	GTAC	5 cut(s)	28, 70, 317, 490, 962
RsaNI	GTAC	5 cut(s)	27, 69, 316, 489, 961
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	1 cut(s)	456
Sau3AI	GATC	2 cut(s)	11, 1039
Sau96I	GGNCC	2 cut(s)	609, 647
SbfI	CCTGCAGG	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	317
ScrFI	CCNGG	3 cut(s)	226, 651, 862
SdaI	CCTGCAGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	291, 367
SetI	ASST	7 cut(s)	48, 55, 274, 460, 472, 652, 999
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	5 cut(s)	187, 283, 406, 442, 1015
SfcI	CTRYAG	4 cut(s)	273, 433, 465, 954
SinI	GGWCC	2 cut(s)	609, 647
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	1076
SmoI	CTYRAG	1 cut(s)	1076
Sse8387I	CCTGCAGG	1 cut(s)	277
Sse9I	AATT	5 cut(s)	253, 334, 378, 717, 1032
SsiI	CCGC	1 cut(s)	682
SspI	AATATT	1 cut(s)	851
SspMI	CTAG	3 cut(s)	117, 422, 551
StyD4I	CCNGG	3 cut(s)	224, 649, 860
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	291, 516, 1042
TasI	AATT	5 cut(s)	253, 334, 378, 717, 1032
TatI	WGTACW	4 cut(s)	68, 315, 488, 960
TfiI	GAWTC	4 cut(s)	18, 77, 89, 110
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	1 cut(s)	455
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	5 cut(s)	102, 126, 414, 810, 844
TspGWI	ACGGA	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	609, 647
XapI	RAATTY	2 cut(s)	378, 717
XmnI	GAANNNNTTC	1 cut(s)	696
XspI	CTAG	3 cut(s)	117, 422, 551
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.