Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

36711904 .. 36716119

Gene Structure 4216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0334500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGTGGAAGAATATAAATTTATCAAGCATAGGAATTCCCAGCTACAATGAGCTTAGAAAGTGTAAGTCTAAACTCTTGCTCACCACAAGGAGATTATCTGTTTGTCATGTCATGAGGAGCCAAGCAATCATCCCTCTTAACATCCTATCAAAAGAAGATTCTTGGAGCTTGTTTGTAAAGGAAGTGGGACATTCTTTTCATGAATCCACCAGATTTTATGATATAGCGAGGAAGGTAGCTAGAGAATGTGCTGGTCTCCCAATTGCATTGATAACAGTTGCAAGGGCACTGCGATATAAAGACATGGAAGAATGGGAAGAAGCAGCTCGACGACTAGGGATGTCTCAACCTGCCAGCCTTGATGATGAGGGAGATGTTTTCAAATGTATAAAGTTGAGCTATGATTACTTGAAAAGTGATCTTGCCAAGTCATGCTTCTTGCTTTGCTGTCTATTCCCAGAAGACTATGACATCCGCATTGAAGACTTGCTTAAATATGGGATCAGTCATGGTTTATTTCGAGATTCCAACACCATGAATGAAGCCAGAGCCAGAATACATTCGGTGGTCAAGTACCTTAAAGCATCAAACTTGCTTTCAGACAGTGAAATAGATGGATGTGTAAGGATGCATGATGTCATTCGGGATATGGCCATATCAACTACATTATCCGAGAACAACAATGGGTTTTTGGTGAAAGCTGGTTTACACAACCTTTCCGAAGAGTTGAAAAGGTCTCGAGTTGAGGAGCGATGGGAGCGTTTAGTTGGTGCAGTATTATGTTGGAAAGGAAAGGAATCAACTTTTGAAAATGGGAGCCATGGTATTGGCATTGATGCAAGCTCTCAAGCTAATTGGGAAGTTCAGGAAATCCTGAAAGTTGCTGATGAAATCCAACTTAACGATCCCATTGTCAGTAGAATCTTATGCGAGCACAGTTATCAATTGGCACTGTATTTGAATTCTAATAGCGACCGAAACGGAGTATTACAACTCAAGAGTGGATTGATGAATGTCTGGAAGCAAAAGCAAGCACGGCTGGGGGGTGAAACTGTGGATAGAAGCCAAGACTTTCTTGTCTTACAGAAGTTCTATAAACTTTATAGAGAGAAGAATAATGTAGAAAAGCTGCGGGAGGAAGAAATGAAGTTGAGGGAATCTGGATCTATCTGTGCAAATCTGGGGGAGTTGGAGAGAAAAACAAGTATAAGGAAAAGAGTTTCTGCAACTCTAAGAATTCTGGAGACAGTTTTGGAGCAGCTGGAGGAAACTCCCGACGAGAAAACGTCTCAAGTTGAGGAGCGTGGTACTTGCGATATTGGAAAAACATCTCAAGTTGAGGAGCGATGGGAGCATATAGTCCATGCAGTACTAAAACGGGAAAGGCTGGGAACTGATGCATACAGGCGGCATGGTACAGGCATTGTTGGAAAAGTTCGATCTTCATTTGCAATTAGCAGGGTTATAAATAAAATTTTGGACGCTGCAGATGAAATTGAAGATGAAAATCTTATTGCCTCTAGAATCTGTATGTCAATCAGTGTCTCGTTTATCTTTTTCCCCATTGGAATGGGTTTATTTGGGAAGGAGGTTCTGATTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

534

Amino Acids

60.92

Weight (kDa)

6.88

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NB-ARC	PF00931	2 - 64	3.5e-07	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1466
AasI	GACNNNNNNGTC	1 cut(s)	1076
Acc36I	ACCTGC	1 cut(s)	358
AciI	CCGC	3 cut(s)	475, 1132, 1408
AclWI	GGATC	3 cut(s)	509, 899, 1171
AcoI	YGGCCR	1 cut(s)	651
AcsI	RAATTY	5 cut(s)	16, 33, 961, 1236, 1473
AfaI	GTAC	4 cut(s)	575, 1309, 1371, 1417
AgsI	TTSAA	7 cut(s)	382, 412, 482, 730, 809, 961, 1499
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	6 cut(s)	260, 348, 741, 1238, 1293, 1549
AlwI	GGATC	3 cut(s)	509, 899, 1171
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	1 cut(s)	651
ApeKI	GCWGC	4 cut(s)	323, 1129, 1258, 1484
ApoI	RAATTY	5 cut(s)	16, 33, 961, 1236, 1473
Asp700I	GAANNNNTTC	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	73, 706, 1058
AvaI	CYCGRG	1 cut(s)	738
BaeGI	GKGCMC	1 cut(s)	289
BalI	TGGCCA	1 cut(s)	653
BbsI	GAAGAC	2 cut(s)	468, 489
Bbv12I	GWGCWC	1 cut(s)	936
BbvI	GCAGC	4 cut(s)	335, 1116, 1270, 1471
BccI	CCATC	3 cut(s)	608, 747, 1341
BceAI	ACGGC	1 cut(s)	1052
BcoDI	GTCTC	6 cut(s)	260, 348, 741, 1238, 1293, 1549
BfaI	CTAG	3 cut(s)	240, 335, 1521
BfmI	CTRYAG	1 cut(s)	1485
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	5 cut(s)	324, 1130, 1259, 1409, 1485
BlsI	GCNGC	5 cut(s)	325, 1131, 1260, 1410, 1486
BmcAI	AGTACT	1 cut(s)	1371
BmeT110I	CYCGRG	1 cut(s)	738
BmiI	GGNNCC	2 cut(s)	119, 818
BmsI	GCATC	4 cut(s)	593, 618, 826, 1387
BpiI	GAAGAC	2 cut(s)	468, 489
BpmI	CTGGAG	2 cut(s)	1262, 1283
BpuEI	CTTGAG	4 cut(s)	831, 980, 1275, 1317
BsaBI	GATNNNNATC	1 cut(s)	1506
BsaI	GGTCTC	2 cut(s)	260, 741
BsaJI	CCNNGG	1 cut(s)	820
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bse8I	GATNNNNATC	1 cut(s)	1506
BseDI	CCNNGG	1 cut(s)	820
BseGI	GGATG	6 cut(s)	129, 141, 345, 471, 623, 633
BseJI	GATNNNNATC	1 cut(s)	1506
BseRI	GAGGAG	4 cut(s)	130, 761, 1313, 1355
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	4 cut(s)	335, 1116, 1270, 1471
BseYI	CCCAGC	3 cut(s)	38, 1039, 1387
BsgI	GTGCAG	1 cut(s)	792
Bsh1285I	CGRYCG	1 cut(s)	976
BshFI	GGCC	1 cut(s)	653
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	738
BslFI	GGGAC	1 cut(s)	201
BsmAI	GTCTC	6 cut(s)	260, 348, 741, 1238, 1293, 1549
BsmBI	CGTCTC	1 cut(s)	1293
BsmFI	GGGAC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	653
Bso31I	GGTCTC	2 cut(s)	260, 741
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	289, 936
Bsp143I	GATC	5 cut(s)	418, 501, 904, 1163, 1439
Bsp19I	CCATGG	1 cut(s)	820
BspACI	CCGC	3 cut(s)	475, 1132, 1408
BspANI	GGCC	1 cut(s)	653
BspHI	TCATGA	2 cut(s)	111, 199
BspLI	GGNNCC	2 cut(s)	119, 818
BspMAI	CTGCAG	1 cut(s)	1489
BspMI	ACCTGC	1 cut(s)	358
BspPI	GGATC	3 cut(s)	509, 899, 1171
BspTNI	GGTCTC	2 cut(s)	260, 741
BssECI	CCNNGG	1 cut(s)	820
BssMI	GATC	5 cut(s)	418, 501, 904, 1163, 1439
BssT1I	CCWWGG	1 cut(s)	820
Bst4CI	ACNGT	6 cut(s)	277, 605, 938, 954, 1054, 1249
Bst6I	CTCTTC	1 cut(s)	717
BstC8I	GCNNGC	4 cut(s)	355, 841, 932, 1032
BstDEI	CTNAG	2 cut(s)	53, 1232
BstDSI	CCRYGG	1 cut(s)	820
BstF5I	GGATG	6 cut(s)	129, 141, 345, 471, 623, 633
BstKTI	GATC	5 cut(s)	421, 504, 907, 1166, 1442
BstMAI	GTCTC	6 cut(s)	260, 348, 741, 1238, 1293, 1549
BstMBI	GATC	5 cut(s)	418, 501, 904, 1163, 1439
BstMCI	CGRYCG	1 cut(s)	976
BstMWI	GCNNNNNNNGC	3 cut(s)	757, 1036, 1351
BstSFI	CTRYAG	1 cut(s)	1485
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	4 cut(s)	335, 1116, 1270, 1471
BstV2I	GAAGAC	2 cut(s)	468, 489
BstX2I	RGATCY	1 cut(s)	1163
BstXI	CCANNNNNNTGG	2 cut(s)	827, 1570
BstYI	RGATCY	1 cut(s)	1163
BsuRI	GGCC	1 cut(s)	653
BtgI	CCRYGG	1 cut(s)	820
BtgZI	GCGATG	2 cut(s)	766, 1360
BtsCI	GGATG	6 cut(s)	129, 141, 345, 471, 623, 633
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	4 cut(s)	287, 610, 950, 1546
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	4 cut(s)	355, 841, 932, 1032
CciI	TCATGA	2 cut(s)	111, 199
CseI	GACGC	1 cut(s)	1490
Csp6I	GTAC	4 cut(s)	574, 1308, 1370, 1416
CviQI	GTAC	4 cut(s)	574, 1308, 1370, 1416
DdeI	CTNAG	2 cut(s)	53, 1232
DpnI	GATC	5 cut(s)	420, 503, 906, 1165, 1441
DpnII	GATC	5 cut(s)	418, 501, 904, 1163, 1439
DrdI	GACNNNNNNGTC	1 cut(s)	1076
DseDI	GACNNNNNNGTC	1 cut(s)	1076
EaeI	YGGCCR	1 cut(s)	651
Eam1104I	CTCTTC	1 cut(s)	717
EarI	CTCTTC	1 cut(s)	717
Eco130I	CCWWGG	1 cut(s)	820
Eco31I	GGTCTC	2 cut(s)	260, 741
Eco88I	CYCGRG	1 cut(s)	738
EcoRI	GAATTC	3 cut(s)	33, 961, 1236
EcoT14I	CCWWGG	1 cut(s)	820
EcoT22I	ATGCAT	2 cut(s)	633, 1402
ErhI	CCWWGG	1 cut(s)	820
Esp3I	CGTCTC	1 cut(s)	1293
FalI	AAGNNNNNCTT	6 cut(s)	419, 451, 474, 506, 1059, 1091
FaqI	GGGAC	1 cut(s)	201
FauI	CCCGC	1 cut(s)	1125
Fnu4HI	GCNGC	5 cut(s)	324, 1130, 1259, 1409, 1485
FokI	GGATG	6 cut(s)	116, 128, 352, 458, 630, 640
Fsp4HI	GCNGC	5 cut(s)	324, 1130, 1259, 1409, 1485
FspBI	CTAG	3 cut(s)	240, 335, 1521
GluI	GCNGC	5 cut(s)	324, 1130, 1259, 1409, 1485
GsaI	CCCAGC	3 cut(s)	42, 1043, 1391
GsuI	CTGGAG	2 cut(s)	1262, 1283
HaeIII	GGCC	1 cut(s)	653
HgaI	GACGC	1 cut(s)	1490
HinfI	GANTC	7 cut(s)	158, 203, 524, 797, 921, 1157, 1524
HphI	GGTGA	3 cut(s)	73, 706, 1058
Hpy166II	GTNNAC	1 cut(s)	707
Hpy188I	TCNGA	4 cut(s)	601, 673, 721, 1596
Hpy8I	GTNNAC	1 cut(s)	707
Hpy99I	CGWCG	2 cut(s)	333, 1280
HpyAV	CCTTC	2 cut(s)	226, 1579
HpyCH4III	ACNGT	6 cut(s)	277, 605, 938, 954, 1054, 1249
HpyCH4IV	ACGT	1 cut(s)	1286
HpyF10VI	GCNNNNNNNGC	3 cut(s)	757, 1036, 1351
HpyF3I	CTNAG	2 cut(s)	53, 1232
HpySE526I	ACGT	1 cut(s)	1286
Kzo9I	GATC	5 cut(s)	418, 501, 904, 1163, 1439
LmnI	GCTCC	9 cut(s)	117, 165, 748, 757, 816, 1255, 1300, 1342, 1351
Lsp1109I	GCAGC	4 cut(s)	335, 1116, 1270, 1471
LweI	GCATC	4 cut(s)	593, 618, 826, 1387
MaeI	CTAG	3 cut(s)	240, 335, 1521
MaeII	ACGT	1 cut(s)	1286
MalI	GATC	5 cut(s)	420, 503, 906, 1165, 1441
MboI	GATC	5 cut(s)	418, 501, 904, 1163, 1439
MfeI	CAATTG	2 cut(s)	261, 944
MflI	RGATCY	1 cut(s)	1163
MhlI	GDGCHC	2 cut(s)	289, 936
MlsI	TGGCCA	1 cut(s)	653
MluNI	TGGCCA	1 cut(s)	653
MmeI	TCCRAC	5 cut(s)	552, 764, 919, 1170, 1408
Mox20I	TGGCCA	1 cut(s)	653
Mph1103I	ATGCAT	2 cut(s)	633, 1402
MroXI	GAANNNNTTC	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	653
MseI	TTAA	4 cut(s)	138, 492, 579, 900
MslI	CAYNNNNRTG	1 cut(s)	1568
Msp20I	TGGCCA	1 cut(s)	653
MspA1I	CMGCKG	1 cut(s)	1261
MunI	CAATTG	2 cut(s)	261, 944
MwoI	GCNNNNNNNGC	3 cut(s)	757, 1036, 1351
NcoI	CCATGG	1 cut(s)	820
NdeII	GATC	5 cut(s)	418, 501, 904, 1163, 1439
NlaIV	GGNNCC	2 cut(s)	119, 818
NsiI	ATGCAT	2 cut(s)	633, 1402
PaeR7I	CTCGAG	1 cut(s)	738
PagI	TCATGA	2 cut(s)	111, 199
PdmI	GAANNNNTTC	1 cut(s)	559
PfeI	GAWTC	7 cut(s)	158, 203, 524, 797, 921, 1157, 1524
PkrI	GCNGC	5 cut(s)	325, 1131, 1260, 1410, 1486
PsiI	TTATAA	1 cut(s)	1466
PspFI	CCCAGC	3 cut(s)	38, 1039, 1387
PspN4I	GGNNCC	2 cut(s)	119, 818
PstI	CTGCAG	1 cut(s)	1489
PsuI	RGATCY	1 cut(s)	1163
PvuII	CAGCTG	1 cut(s)	1261
RsaI	GTAC	4 cut(s)	575, 1309, 1371, 1417
RsaNI	GTAC	4 cut(s)	574, 1308, 1370, 1416
RseI	CAYNNNNRTG	1 cut(s)	1568
SaqAI	TTAA	4 cut(s)	138, 492, 579, 900
SatI	GCNGC	5 cut(s)	324, 1130, 1259, 1409, 1485
Sau3AI	GATC	5 cut(s)	418, 501, 904, 1163, 1439
ScaI	AGTACT	1 cut(s)	1371
SduI	GDGCHC	2 cut(s)	289, 936
SfaNI	GCATC	4 cut(s)	593, 618, 826, 1387
SfcI	CTRYAG	1 cut(s)	1485
Sfr274I	CTCGAG	1 cut(s)	738
SlaI	CTCGAG	1 cut(s)	738
SmiMI	CAYNNNNRTG	1 cut(s)	1568
SmlI	CTYRAG	5 cut(s)	738, 846, 995, 1290, 1332
SmoI	CTYRAG	5 cut(s)	738, 846, 995, 1290, 1332
SsiI	CCGC	3 cut(s)	475, 1132, 1408
SspMI	CTAG	3 cut(s)	240, 335, 1521
StyI	CCWWGG	1 cut(s)	820
TaaI	ACNGT	6 cut(s)	277, 605, 938, 954, 1054, 1249
TaiI	ACGT	1 cut(s)	1289
TaqI	TCGA	4 cut(s)	328, 520, 739, 1438
TaqII	GACCGA	1 cut(s)	990
TatI	WGTACW	1 cut(s)	1369
TauI	GCSGC	1 cut(s)	1411
TfiI	GAWTC	7 cut(s)	158, 203, 524, 797, 921, 1157, 1524
Tru1I	TTAA	4 cut(s)	138, 492, 579, 900
Tru9I	TTAA	4 cut(s)	138, 492, 579, 900
TscAI	CASTG	4 cut(s)	294, 610, 957, 1546
TseI	GCWGC	4 cut(s)	323, 1129, 1258, 1484
TspGWI	ACGGA	1 cut(s)	996
TspRI	CASTG	4 cut(s)	294, 610, 957, 1546
XapI	RAATTY	5 cut(s)	16, 33, 961, 1236, 1473
XbaI	TCTAGA	1 cut(s)	1520
XhoI	CTCGAG	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	559
XspI	CTAG	3 cut(s)	240, 335, 1521
ZrmI	AGTACT	1 cut(s)	1371
Zsp2I	ATGCAT	2 cut(s)	633, 1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.