Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481587.1

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

359 .. 1330

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481587.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atgagagaagtcaaggtgaaaggtgtttcggggttgtgtactcttgattctgataatgaatcgcaaatcctacaatctgaatcggctagtgtcagccagagatgttcatctccaaatgtgcagtccacgcctgaaatagaaaagaagtatgtccatcatgtttatgatgctatcgcaccccatttcagttccacccggtttgctaagtggccaaaagtagccaattttttatcttccttacctgcaggaactcttgtgctcgatgcaggatgtggaaatgggaagtacttgggatttaatcccaattgcttttccatagggtgtgacataagtgctcctcttatcaaaatttgtgcagatagagggcatgaagttttggttgcagatgctctagttctaccctatagaactggttttggtgatgcagctatctctatagctgtattacatcatctgagtacagagagcaggaggaaaaaagcaatcgaagagttagtccgagttgtgaaaaagggtggtctagttctaataacggtttgggctgtggaacaagaagataaagcattagtttctaaatggaccccactcaccgaaaagtatggagaagagtggataggacctggtagtcctcgtgtgcgtagtccgtcgtcccgcacattggaaagcattccagaaacagaggatagaattatgggagagaatgtgaaacattccaaccagagttctgtgcagactttgcaacaaatgcgctctcaaaatgaaggtaatacaagggcttcagatgatataaagactacaaataatcaacaagaatatttcgtcccctggcacttgccatatcatcgtgctgaaataaatggtgcttcggcttgtgctgttgcaaatggccttgcaaagaaagatgataagaagggtgctgtagtgtacaacagatattaccatgtttttagtgaaggcgagcttgaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

323

Amino Acids

35.64

Weight (kDa)

7.14

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	624
Acc36I	ACCTGC	1 cut(s)	250
AciI	CCGC	1 cut(s)	652
AcoI	YGGCCR	1 cut(s)	209
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	1 cut(s)	762
AfaI	GTAC	4 cut(s)	40, 287, 460, 926
AfiI	CCNNNNNNNGG	1 cut(s)	658
AgsI	TTSAA	1 cut(s)	965
AjnI	CCWGG	2 cut(s)	619, 824
AluBI	AGCT	3 cut(s)	428, 440, 961
AluI	AGCT	3 cut(s)	428, 440, 961
Alw21I	GWGCWC	2 cut(s)	261, 337
AoxI	GGCC	2 cut(s)	209, 886
ApeKI	GCWGC	1 cut(s)	425
ApoI	RAATTY	1 cut(s)	348
ArsI	GACNNNNNNTTYG	4 cut(s)	107, 139, 480, 512
Asp700I	GAANNNNTTC	1 cut(s)	666
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	2 cut(s)	579, 617
AsuC2I	CCSGG	1 cut(s)	196
AsuHPI	GGTGA	3 cut(s)	28, 431, 580
AvaII	GGWCC	2 cut(s)	579, 617
BalI	TGGCCA	1 cut(s)	211
BauI	CACGAG	1 cut(s)	630
Bbv12I	GWGCWC	2 cut(s)	261, 337
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	2 cut(s)	621, 826
BcnI	CCSGG	1 cut(s)	196
BfaI	CTAG	3 cut(s)	87, 392, 521
BfmI	CTRYAG	4 cut(s)	243, 403, 435, 918
BfuAI	ACCTGC	1 cut(s)	250
BisI	GCNGC	1 cut(s)	426
BlsI	GCNGC	1 cut(s)	427
BmcAI	AGTACT	1 cut(s)	287
Bme1390I	CCNGG	3 cut(s)	196, 621, 826
Bme18I	GGWCC	2 cut(s)	579, 617
BmgT120I	GGNCC	2 cut(s)	579, 617
BmiI	GGNNCC	1 cut(s)	581
BmrFI	CCNGG	3 cut(s)	196, 621, 826
BmsI	GCATC	4 cut(s)	157, 253, 376, 412
BpuMI	CCSGG	1 cut(s)	196
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	824
BsaXI	ACNNNNNCTCC	2 cut(s)	687, 717
Bsc4I	CCNNNNNNNGG	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	415
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	621, 826
BseDI	CCNNGG	1 cut(s)	824
BseGI	GGATG	1 cut(s)	275
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	658
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	437
BsgI	GTGCAG	3 cut(s)	140, 375, 749
BshFI	GGCC	2 cut(s)	211, 888
BsiHKAI	GWGCWC	2 cut(s)	261, 337
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	2 cut(s)	634, 806
BslI	CCNNNNNNNGG	1 cut(s)	658
BsmFI	GGGAC	2 cut(s)	634, 806
BsmI	GAATGC	1 cut(s)	666
BsnI	GGCC	2 cut(s)	211, 888
Bsp1286I	GDGCHC	2 cut(s)	261, 337
Bsp1407I	TGTACA	1 cut(s)	924
BspACI	CCGC	1 cut(s)	652
BspANI	GGCC	2 cut(s)	211, 888
BspCNI	CTCAG	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	581
BspMAI	CTGCAG	1 cut(s)	247
BspMI	ACCTGC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	824
BssSI	CACGAG	1 cut(s)	630
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	2 cut(s)	621, 826
Bst4CI	ACNGT	1 cut(s)	535
Bst6I	CTCTTC	2 cut(s)	483, 600
BstAPI	GCANNNNNTGC	2 cut(s)	736, 745
BstAUI	TGTACA	1 cut(s)	924
BstC8I	GCNNGC	1 cut(s)	959
BstDEI	CTNAG	2 cut(s)	204, 455
BstF5I	GGATG	1 cut(s)	275
BstHHI	GCGC	1 cut(s)	750
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 736, 745
BstNI	CCWGG	2 cut(s)	621, 826
BstSCI	CCNGG	3 cut(s)	194, 619, 824
BstSFI	CTRYAG	4 cut(s)	243, 403, 435, 918
BstV1I	GCAGC	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	211, 888
BtsCI	GGATG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	959
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	2 cut(s)	579, 617
CsiI	ACCWGGT	1 cut(s)	619
Csp6I	GTAC	4 cut(s)	39, 286, 459, 925
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	3 cut(s)	158, 368, 941
CviQI	GTAC	4 cut(s)	39, 286, 459, 925
DdeI	CTNAG	2 cut(s)	204, 455
DrdI	GACNNNNNNGTC	1 cut(s)	624
DseDI	GACNNNNNNGTC	1 cut(s)	624
EaeI	YGGCCR	1 cut(s)	209
Eam1104I	CTCTTC	2 cut(s)	483, 600
EarI	CTCTTC	2 cut(s)	483, 600
Eco47I	GGWCC	2 cut(s)	579, 617
Eco57I	CTGAAG	1 cut(s)	762
EcoO109I	RGGNCCY	1 cut(s)	617
EcoRII	CCWGG	2 cut(s)	619, 824
FaeI	CATG	3 cut(s)	161, 371, 944
FalI	AAGNNNNNCTT	1 cut(s)	945
FaqI	GGGAC	2 cut(s)	634, 806
FatI	CATG	3 cut(s)	157, 367, 940
FauI	CCCGC	1 cut(s)	659
Fnu4HI	GCNGC	1 cut(s)	426
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	1 cut(s)	426
FspBI	CTAG	3 cut(s)	87, 392, 521
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	211, 888
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	161, 371, 944
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HinfI	GANTC	3 cut(s)	47, 59, 80
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	3 cut(s)	28, 431, 580
Hpy166II	GTNNAC	3 cut(s)	39, 126, 925
Hpy188I	TCNGA	5 cut(s)	52, 79, 456, 500, 781
Hpy188III	TCNNGA	2 cut(s)	44, 671
Hpy8I	GTNNAC	3 cut(s)	39, 126, 925
Hpy99I	CGWCG	1 cut(s)	649
HpyAV	CCTTC	3 cut(s)	755, 904, 947
HpyCH4III	ACNGT	1 cut(s)	535
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 736, 745
HpyF3I	CTNAG	2 cut(s)	204, 455
Hsp92II	CATG	3 cut(s)	161, 371, 944
HspAI	GCGC	1 cut(s)	748
LmnI	GCTCC	1 cut(s)	340
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	4 cut(s)	157, 253, 376, 412
MabI	ACCWGGT	1 cut(s)	619
MaeI	CTAG	3 cut(s)	87, 392, 521
MaeIII	GTNAC	1 cut(s)	323
MboII	GAAGA	4 cut(s)	225, 500, 566, 617
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	2 cut(s)	261, 337
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	4 cut(s)	223, 304, 348, 687
MluNI	TGGCCA	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	738
MnlI	CCTC	5 cut(s)	348, 356, 465, 639, 673
Mox20I	TGGCCA	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	666
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	211
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	3 cut(s)	196, 621, 826
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	1 cut(s)	666
MvaI	CCWGG	2 cut(s)	621, 826
MwoI	GCNNNNNNNGC	3 cut(s)	127, 736, 745
NciI	CCSGG	1 cut(s)	196
NlaIII	CATG	3 cut(s)	161, 371, 944
NlaIV	GGNNCC	1 cut(s)	581
NmuCI	GTSAC	1 cut(s)	323
PctI	GAATGC	1 cut(s)	666
PdmI	GAANNNNTTC	1 cut(s)	666
PfeI	GAWTC	3 cut(s)	47, 59, 80
PkrI	GCNGC	1 cut(s)	427
PpuMI	RGGWCCY	1 cut(s)	617
Psp5II	RGGWCCY	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	619, 824
PspGI	CCWGG	2 cut(s)	619, 824
PspN4I	GGNNCC	1 cut(s)	581
PspPI	GGNCC	2 cut(s)	579, 617
PspPPI	RGGWCCY	1 cut(s)	617
PstI	CTGCAG	1 cut(s)	247
RsaI	GTAC	4 cut(s)	40, 287, 460, 926
RsaNI	GTAC	4 cut(s)	39, 286, 459, 925
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	1 cut(s)	426
Sau96I	GGNCC	2 cut(s)	579, 617
SbfI	CCTGCAGG	1 cut(s)	247
ScaI	AGTACT	1 cut(s)	287
ScrFI	CCNGG	3 cut(s)	196, 621, 826
SdaI	CCTGCAGG	1 cut(s)	247
SduI	GDGCHC	2 cut(s)	261, 337
SetI	ASST	9 cut(s)	18, 25, 244, 430, 442, 622, 766, 963, 971
SexAI	ACCWGGT	1 cut(s)	619
SfaNI	GCATC	4 cut(s)	157, 253, 376, 412
SfcI	CTRYAG	4 cut(s)	243, 403, 435, 918
SinI	GGWCC	2 cut(s)	579, 617
SmiMI	CAYNNNNRTG	1 cut(s)	162
Sse8387I	CCTGCAGG	1 cut(s)	247
Sse9I	AATT	4 cut(s)	223, 304, 348, 687
SsiI	CCGC	1 cut(s)	652
SspI	AATATT	1 cut(s)	815
SspMI	CTAG	3 cut(s)	87, 392, 521
StyD4I	CCNGG	3 cut(s)	194, 619, 824
TaaI	ACNGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	261, 486
TasI	AATT	4 cut(s)	223, 304, 348, 687
TatI	WGTACW	4 cut(s)	38, 285, 458, 924
TfiI	GAWTC	3 cut(s)	47, 59, 80
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	425
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	4 cut(s)	72, 96, 384, 774
TspGWI	ACGGA	1 cut(s)	633
VpaK11BI	GGWCC	2 cut(s)	579, 617
XapI	RAATTY	1 cut(s)	348
XmnI	GAANNNNTTC	1 cut(s)	666
XspI	CTAG	3 cut(s)	87, 392, 521
ZrmI	AGTACT	1 cut(s)	287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.