Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

2482780 .. 2486207

Gene Structure 3428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00220270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTTTGTGATGCTCTGAGAGCAAGTAGATCCTTTTATTTGTCAAGGGAGGCCTTGCATCTTCCAACTGTAATAATCGGTCGTGTTTATCATTCAGGAATCTTCCGTACAATGAGAGAAGTCAAGGTAAAAGGTGTTTCGGGGTTGTGTACTCTTGATTCTGATAATGAATCGCAAATCCTACAATCTGAATCGGCTAGTGTCAGCCAGAGATGTTTATCTCCAAATGTGCAGTCCACGCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTATCGCACCCCATTTCAGTTCCACCCGGTTTGCTAAGTGGCCAAAAGTAGCCAATTTTTTATCTTCCTTACCTGCAGGAACTCTTGTGCTCGATGCAGGATGTGGAAATGGGAAGTACTTGGGATTTAATCCCAATTGTTTTTCCATAGGGTGTGACATAAGTGCTCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTTTTGGTTGCAGATGCTCTAGTTCTACCCTATAGAACTGGTTTTGGTGATGCAGCTATCTCCATAGCTGTATTACATCATCTGAGTACAGAGAGCAGAAGGAAAAAAGCAATCGAAGAGTTAGTCCGAGTTGTGAAAAAGGGTGGTCTAGTTCTAATAACAGTTTGGGCTGTGGAACAAGAAGATAAAGCATTAGTTTCTAAATGGACCCCACTCACCGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGTCCTCGTGTGCGTAGTCCGTCATCCCGCACATTGGAAAGCATTCCAGAAACAGAGGATAGAATTTTGGGAGAGAATGTGAAACATTCCAACCAGAGTTCTGTGCAGACTTTGCAACAAATGCACTCTCAAAATGAAGGTAATACACGGGCTTCAGATGATATAAAGACTACAAATAATCAACAAGAATATTTCATCCCCTGGCACTTGCCATATCATCGTGCTGAAATAAATGGTGCTTCGGCTTGTGCTGTTGCAAATGGCCTTGCAAAGAAAGATGATAAGAAGGGTGCTGTAGTGTACAACAGATATTACCATGTTTTTAGTGAAGGCGAGCTTGAAAGGCTGGTATCTGGTATGGATGATGCTGTAATTGTTGATCGATTTTTTGACAAATCCAACTGGTGTATTGTCCTTGAGAAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

388

Amino Acids

43.11

Weight (kDa)

7.2

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_31	PF13847	120 - 232	9.6e-06	Methyltransferase domain
Methyltransf_25	PF13649	123 - 210	4.7e-11	Methyltransferase domain
Methyltransf_11	PF08241	124 - 214	3e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	735
Acc36I	ACCTGC	1 cut(s)	361
AciI	CCGC	1 cut(s)	763
AclWI	GGATC	1 cut(s)	24
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	459, 798
AcuI	CTGAAG	1 cut(s)	873
AfaI	GTAC	5 cut(s)	109, 151, 398, 571, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	769
AgsI	TTSAA	1 cut(s)	1076
AjnI	CCWGG	2 cut(s)	730, 935
AluBI	AGCT	3 cut(s)	539, 551, 1072
AluI	AGCT	3 cut(s)	539, 551, 1072
Alw21I	GWGCWC	2 cut(s)	372, 448
AlwI	GGATC	1 cut(s)	24
AoxI	GGCC	3 cut(s)	51, 320, 997
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	2 cut(s)	459, 798
ArsI	GACNNNNNNTTYG	4 cut(s)	218, 250, 591, 623
Asp700I	GAANNNNTTC	1 cut(s)	777
AspS9I	GGNCC	2 cut(s)	690, 728
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	2 cut(s)	542, 691
AvaII	GGWCC	2 cut(s)	690, 728
BalI	TGGCCA	1 cut(s)	322
BauI	CACGAG	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	372, 448
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	2 cut(s)	732, 937
BcnI	CCSGG	1 cut(s)	307
BfaI	CTAG	3 cut(s)	198, 503, 632
BfmI	CTRYAG	3 cut(s)	354, 514, 1029
BfuAI	ACCTGC	1 cut(s)	361
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	307, 732, 937
Bme18I	GGWCC	2 cut(s)	690, 728
BmgT120I	GGNCC	2 cut(s)	690, 728
BmiI	GGNNCC	1 cut(s)	692
BmrFI	CCNGG	3 cut(s)	307, 732, 937
BmsI	GCATC	6 cut(s)	67, 268, 364, 487, 523, 1090
BpuMI	CCSGG	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	1117
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	935
BsaXI	ACNNNNNCTCC	2 cut(s)	798, 828
Bsc4I	CCNNNNNNNGG	1 cut(s)	769
Bse1I	ACTGG	2 cut(s)	526, 1142
Bse8I	GATNNNNATC	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	732, 937
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	4 cut(s)	386, 758, 930, 1102
BseJI	GATNNNNATC	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	769
BseMII	CTCAG	2 cut(s)	8, 557
BseNI	ACTGG	2 cut(s)	526, 1142
BseRI	GAGGAG	1 cut(s)	438
BseXI	GCAGC	1 cut(s)	548
BsgI	GTGCAG	3 cut(s)	251, 486, 860
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	53, 322, 999
BshVI	ATCGAT	1 cut(s)	1117
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	2 cut(s)	372, 448
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	769
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	3 cut(s)	53, 322, 999
Bsp1286I	GDGCHC	2 cut(s)	372, 448
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	2 cut(s)	29, 1114
BspACI	CCGC	1 cut(s)	763
BspANI	GGCC	3 cut(s)	53, 322, 999
BspCNI	CTCAG	2 cut(s)	9, 558
BspDI	ATCGAT	1 cut(s)	1117
BspLI	GGNNCC	1 cut(s)	692
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	24
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	526, 1142
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	2 cut(s)	29, 1114
BssSI	CACGAG	1 cut(s)	741
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	2 cut(s)	732, 937
Bst4CI	ACNGT	2 cut(s)	70, 646
Bst6I	CTCTTC	2 cut(s)	594, 711
BstAPI	GCANNNNNTGC	2 cut(s)	847, 856
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	1 cut(s)	1070
BstDEI	CTNAG	3 cut(s)	17, 315, 566
BstF5I	GGATG	4 cut(s)	386, 758, 930, 1102
BstKTI	GATC	2 cut(s)	32, 1117
BstMBI	GATC	2 cut(s)	29, 1114
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 238, 847, 856, 1078
BstNI	CCWGG	2 cut(s)	732, 937
BstSCI	CCNGG	3 cut(s)	305, 730, 935
BstSFI	CTRYAG	3 cut(s)	354, 514, 1029
BstV1I	GCAGC	1 cut(s)	548
BstX2I	RGATCY	1 cut(s)	29
BstYI	RGATCY	1 cut(s)	29
Bsu15I	ATCGAT	1 cut(s)	1117
BsuRI	GGCC	3 cut(s)	53, 322, 999
BsuTUI	ATCGAT	1 cut(s)	1117
BtsCI	GGATG	4 cut(s)	386, 758, 930, 1102
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	1070
Cfr13I	GGNCC	2 cut(s)	690, 728
ClaI	ATCGAT	1 cut(s)	1117
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	5 cut(s)	108, 150, 397, 570, 1036
CspCI	CAANNNNNGTGG	2 cut(s)	292, 327
CviAII	CATG	3 cut(s)	269, 479, 1052
CviQI	GTAC	5 cut(s)	108, 150, 397, 570, 1036
DdeI	CTNAG	3 cut(s)	17, 315, 566
DpnI	GATC	2 cut(s)	31, 1116
DpnII	GATC	2 cut(s)	29, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	735
DseDI	GACNNNNNNGTC	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	594, 711
EarI	CTCTTC	2 cut(s)	594, 711
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	2 cut(s)	690, 728
Eco57I	CTGAAG	1 cut(s)	873
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	730, 935
FaeI	CATG	3 cut(s)	272, 482, 1055
FalI	AAGNNNNNCTT	2 cut(s)	1056, 1088
FatI	CATG	3 cut(s)	268, 478, 1051
FauI	CCCGC	1 cut(s)	770
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	4 cut(s)	393, 745, 917, 1109
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	3 cut(s)	198, 503, 632
GluI	GCNGC	1 cut(s)	537
HaeIII	GGCC	3 cut(s)	53, 322, 999
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	3 cut(s)	272, 482, 1055
HinfI	GANTC	4 cut(s)	99, 158, 170, 191
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	2 cut(s)	542, 691
Hpy166II	GTNNAC	3 cut(s)	150, 237, 1036
Hpy188I	TCNGA	6 cut(s)	18, 163, 190, 567, 611, 892
Hpy188III	TCNNGA	3 cut(s)	96, 155, 782
Hpy8I	GTNNAC	3 cut(s)	150, 237, 1036
HpyAV	CCTTC	4 cut(s)	576, 866, 1015, 1058
HpyCH4III	ACNGT	2 cut(s)	70, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 238, 847, 856, 1078
HpyF3I	CTNAG	3 cut(s)	17, 315, 566
Hsp92II	CATG	3 cut(s)	272, 482, 1055
Kzo9I	GATC	2 cut(s)	29, 1114
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	6 cut(s)	67, 268, 364, 487, 523, 1090
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	3 cut(s)	198, 503, 632
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	2 cut(s)	31, 1116
MboI	GATC	2 cut(s)	29, 1114
MboII	GAAGA	6 cut(s)	53, 94, 336, 611, 677, 728
MfeI	CAATTG	1 cut(s)	415
MflI	RGATCY	1 cut(s)	29
MhlI	GDGCHC	2 cut(s)	372, 448
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	5 cut(s)	334, 415, 459, 798, 1107
MluNI	TGGCCA	1 cut(s)	322
MmeI	TCCRAC	3 cut(s)	89, 849, 1158
MnlI	CCTC	5 cut(s)	43, 459, 467, 750, 784
Mox20I	TGGCCA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	322
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	3 cut(s)	307, 732, 937
MunI	CAATTG	1 cut(s)	415
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	2 cut(s)	732, 937
MwoI	GCNNNNNNNGC	5 cut(s)	20, 238, 847, 856, 1078
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	2 cut(s)	29, 1114
NlaIII	CATG	3 cut(s)	272, 482, 1055
NlaIV	GGNNCC	1 cut(s)	692
NmuCI	GTSAC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	53
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	4 cut(s)	99, 158, 170, 191
PkrI	GCNGC	1 cut(s)	538
PpuMI	RGGWCCY	1 cut(s)	728
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	730, 935
PspGI	CCWGG	2 cut(s)	730, 935
PspN4I	GGNNCC	1 cut(s)	692
PspPI	GGNCC	2 cut(s)	690, 728
PspPPI	RGGWCCY	1 cut(s)	728
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	29
RsaI	GTAC	5 cut(s)	109, 151, 398, 571, 1037
RsaNI	GTAC	5 cut(s)	108, 150, 397, 570, 1036
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	2 cut(s)	29, 1114
Sau96I	GGNCC	2 cut(s)	690, 728
SbfI	CCTGCAGG	1 cut(s)	358
ScaI	AGTACT	1 cut(s)	398
ScrFI	CCNGG	3 cut(s)	307, 732, 937
SdaI	CCTGCAGG	1 cut(s)	358
SduI	GDGCHC	2 cut(s)	372, 448
SetI	ASST	8 cut(s)	129, 136, 355, 541, 553, 733, 877, 1074
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	6 cut(s)	67, 268, 364, 487, 523, 1090
SfcI	CTRYAG	3 cut(s)	354, 514, 1029
SinI	GGWCC	2 cut(s)	690, 728
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
Sse8387I	CCTGCAGG	1 cut(s)	358
Sse9I	AATT	5 cut(s)	334, 415, 459, 798, 1107
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	763
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	3 cut(s)	198, 503, 632
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	305, 730, 935
TaaI	ACNGT	2 cut(s)	70, 646
TaqI	TCGA	3 cut(s)	372, 597, 1117
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	5 cut(s)	334, 415, 459, 798, 1107
TatI	WGTACW	4 cut(s)	149, 396, 569, 1035
TfiI	GAWTC	4 cut(s)	99, 158, 170, 191
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TseFI	GTSAC	1 cut(s)	434
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	4 cut(s)	183, 495, 885, 919
TspGWI	ACGGA	2 cut(s)	95, 744
VpaK11BI	GGWCC	2 cut(s)	690, 728
XapI	RAATTY	2 cut(s)	459, 798
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	3 cut(s)	198, 503, 632
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.