Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

41958050 .. 41961910

Gene Structure 3861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G509000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTTTGTAATGTTCTAAGAGCAAGTAGAAGCTTTTATCTGTCTAGTAAGGCCTTCCATCTTCCCACTGTAATAATTGGTAGTGTTTCTTATTCAGGAATCTTCAGTACTATGAGAGAAGTCAAGGTAAAAGGTGTGTCTAGTTCGTGTACTCTTGATTCCAATGGAGAATCTCACATCCTACAATCTGAATTAGCTAGTGACAGCCAGAGAAATTCATCCTTGAACGTGCAATTCACTCCTGAAATTGAAAAGAAGTATGTTCATCATGTTTATGATGCTATCGCGCCCCATTTCAGTTCTACCCGGTTTGCTAAGTGGCCAAAAGTAGCCAATTTTTTATCTTCCTTACCTTCAGGATCTCTTGTCCTGGATGCAGGATGTGGGAATGGGAAGTACTTGGGATTTAATCCTGATTGTTTTTTCATCGGATGTGATATAAGTGCCCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTGTTGGTTGCAGACGCTGTAGATCTGCCATATAGAACTGGTTTTGGTGATGCGGCTATCTCTATAGCTGTATTACATCATCTAAGTACACAGGGTAGGAGGAAAAAGGCAATAGAAGAGTTGATCCGAGTTGTGAAAAAGGGTGGCCTAGTTCTAATAACAGTTTGGGCTGTAGAACAAGAAGATAAATCACTACTTGCCAAATGGACTCCACTTACCCAAAAGTATGGGGAAGAGTGGATAGGACCTGGTAGTCCACGTGTTCGTAGCCCTTCATCCTGCACATTGGAAAGCATTCCAGAAACAGAGGAGAATGGTTTTGGAGAGCGTAAGCAAGATTCTGGCGAGAGTTCTATGCAGAGTTTGCAGGAAATAACCTCTCAAACTGAAAGTTATTCAGGGGCTTCTACTGATGTAAAAAATGCAAATAATCAACAAGAATATTTCGTCCCCTGGCACTTACCATATCATCGTGCTGAAGTAAGTGGTGCTTCTGCTTGTGCTCTTGCAAATGGCCTTGCAAAGAAAGATGATAAAAAGGGTGCCGTAGTCTATAACAGATACTACCATGTTTTCAGTGAAGGCGAGCTTGAAAGGTTGGTAGCTGGTATTGATAATGCTGTAATTGTTGACAGATTTTTTGACAAATCCAACTGGTGCGTTGTCCTGGAGAAAAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

389

Amino Acids

42.73

Weight (kDa)

6.61

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	735
AccB1I	GGYRCC	1 cut(s)	1025
AccII	CGCG	1 cut(s)	287
AciI	CCGC	1 cut(s)	536
AclWI	GGATC	2 cut(s)	367, 601
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	214, 459
AcuI	CTGAAG	3 cut(s)	88, 339, 981
AcvI	CACGTG	1 cut(s)	743
AfaI	GTAC	4 cut(s)	109, 151, 398, 571
AflIII	ACRYGT	1 cut(s)	742
AgsI	TTSAA	3 cut(s)	226, 251, 1076
AjnI	CCWGG	4 cut(s)	369, 730, 935, 1149
AluBI	AGCT	5 cut(s)	33, 197, 551, 1072, 1088
AluI	AGCT	5 cut(s)	33, 197, 551, 1072, 1088
Alw21I	GWGCWC	1 cut(s)	988
AlwI	GGATC	2 cut(s)	367, 601
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	4 cut(s)	51, 320, 628, 997
ApoI	RAATTY	2 cut(s)	214, 459
ArsI	GACNNNNNNTTYG	2 cut(s)	1106, 1138
Asp700I	GAANNNNTTC	1 cut(s)	777
AspLEI	GCGC	1 cut(s)	289
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	542
AvaII	GGWCC	1 cut(s)	728
BaeGI	GKGCMC	1 cut(s)	448
BalI	TGGCCA	1 cut(s)	322
BanI	GGYRCC	1 cut(s)	1025
BbrPI	CACGTG	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	988
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	1013
BciT130I	CCWGG	4 cut(s)	371, 732, 937, 1151
BcnI	CCSGG	1 cut(s)	307
BfaI	CTAG	4 cut(s)	45, 141, 198, 632
BfmI	CTRYAG	3 cut(s)	501, 546, 654
BglII	AGATCT	1 cut(s)	505
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	2 cut(s)	109, 398
Bme1390I	CCNGG	5 cut(s)	307, 371, 732, 937, 1151
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmiI	GGNNCC	1 cut(s)	1027
BmrFI	CCNGG	5 cut(s)	307, 371, 732, 937, 1151
BmsI	GCATC	3 cut(s)	268, 364, 523
BpuMI	CCSGG	1 cut(s)	307
BsaAI	YACGTR	1 cut(s)	743
BsaJI	CCNNGG	1 cut(s)	935
Bse1I	ACTGG	2 cut(s)	526, 1142
BseBI	CCWGG	4 cut(s)	371, 732, 937, 1151
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	6 cut(s)	177, 218, 379, 386, 437, 758
BseNI	ACTGG	2 cut(s)	526, 1142
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	448
BsgI	GTGCAG	2 cut(s)	486, 748
Bsh1236I	CGCG	1 cut(s)	287
BshFI	GGCC	4 cut(s)	53, 322, 630, 999
BshNI	GGYRCC	1 cut(s)	1025
BsiHKAI	GWGCWC	1 cut(s)	988
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	1 cut(s)	917
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	777
BsnI	GGCC	4 cut(s)	53, 322, 630, 999
Bsp1286I	GDGCHC	2 cut(s)	448, 988
Bsp143I	GATC	3 cut(s)	359, 505, 606
BspACI	CCGC	1 cut(s)	536
BspANI	GGCC	4 cut(s)	53, 322, 630, 999
BspFNI	CGCG	1 cut(s)	287
BspLI	GGNNCC	1 cut(s)	1027
BspPI	GGATC	2 cut(s)	367, 601
BspT107I	GGYRCC	1 cut(s)	1025
BsrI	ACTGG	2 cut(s)	526, 1142
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	3 cut(s)	359, 505, 606
Bst2UI	CCWGG	4 cut(s)	371, 732, 937, 1151
Bst4CI	ACNGT	2 cut(s)	70, 646
Bst6I	CTCTTC	2 cut(s)	594, 711
BstAPI	GCANNNNNTGC	1 cut(s)	847
BstBAI	YACGTR	1 cut(s)	743
BstC8I	GCNNGC	1 cut(s)	1070
BstDEI	CTNAG	3 cut(s)	17, 315, 566
BstF5I	GGATG	6 cut(s)	177, 218, 379, 386, 437, 758
BstFNI	CGCG	1 cut(s)	287
BstHHI	GCGC	1 cut(s)	289
BstKTI	GATC	3 cut(s)	362, 508, 609
BstMBI	GATC	3 cut(s)	359, 505, 606
BstMWI	GCNNNNNNNGC	1 cut(s)	847
BstNI	CCWGG	4 cut(s)	371, 732, 937, 1151
BstSCI	CCNGG	5 cut(s)	305, 369, 730, 935, 1149
BstSFI	CTRYAG	3 cut(s)	501, 546, 654
BstSLI	GKGCMC	1 cut(s)	448
BstUI	CGCG	1 cut(s)	287
BstX2I	RGATCY	2 cut(s)	359, 505
BstXI	CCANNNNNNTGG	1 cut(s)	710
BstYI	RGATCY	2 cut(s)	359, 505
BsuRI	GGCC	4 cut(s)	53, 322, 630, 999
BtsCI	GGATG	6 cut(s)	177, 218, 379, 386, 437, 758
BtsIMutI	CAGTG	2 cut(s)	66, 1066
Cac8I	GCNNGC	1 cut(s)	1070
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	289
Cfr13I	GGNCC	1 cut(s)	728
CseI	GACGC	1 cut(s)	506
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	4 cut(s)	108, 150, 397, 570
CviAII	CATG	3 cut(s)	269, 479, 1052
CviQI	GTAC	4 cut(s)	108, 150, 397, 570
DdeI	CTNAG	3 cut(s)	17, 315, 566
DpnI	GATC	3 cut(s)	361, 507, 608
DpnII	GATC	3 cut(s)	359, 505, 606
DrdI	GACNNNNNNGTC	1 cut(s)	735
DseDI	GACNNNNNNGTC	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	594, 711
EarI	CTCTTC	2 cut(s)	594, 711
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	3 cut(s)	88, 339, 981
Eco72I	CACGTG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	4 cut(s)	369, 730, 935, 1149
FaeI	CATG	3 cut(s)	272, 482, 1055
FalI	AAGNNNNNCTT	4 cut(s)	958, 990, 1056, 1088
FaqI	GGGAC	1 cut(s)	917
FatI	CATG	3 cut(s)	268, 478, 1051
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	6 cut(s)	164, 205, 386, 393, 444, 745
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	4 cut(s)	45, 141, 198, 632
GlaI	GCGC	1 cut(s)	288
GluI	GCNGC	1 cut(s)	537
HaeIII	GGCC	4 cut(s)	53, 322, 630, 999
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	1 cut(s)	506
HhaI	GCGC	1 cut(s)	289
Hin1II	CATG	3 cut(s)	272, 482, 1055
Hin6I	GCGC	1 cut(s)	287
HinP1I	GCGC	1 cut(s)	287
HincII	GTYRAC	1 cut(s)	1114
HindII	GTYRAC	1 cut(s)	1114
HindIII	AAGCTT	1 cut(s)	31
HinfI	GANTC	5 cut(s)	99, 158, 170, 691, 821
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	1 cut(s)	542
Hpy166II	GTNNAC	4 cut(s)	150, 572, 740, 1114
Hpy188I	TCNGA	3 cut(s)	190, 431, 611
Hpy188III	TCNNGA	6 cut(s)	96, 155, 242, 357, 413, 782
Hpy8I	GTNNAC	4 cut(s)	150, 572, 740, 1114
HpyAV	CCTTC	4 cut(s)	64, 363, 765, 1058
HpyCH4III	ACNGT	2 cut(s)	70, 646
HpyCH4IV	ACGT	2 cut(s)	228, 742
HpyF10VI	GCNNNNNNNGC	1 cut(s)	847
HpyF3I	CTNAG	3 cut(s)	17, 315, 566
HpySE526I	ACGT	2 cut(s)	228, 742
Hsp92II	CATG	3 cut(s)	272, 482, 1055
HspAI	GCGC	1 cut(s)	287
Kzo9I	GATC	3 cut(s)	359, 505, 606
LweI	GCATC	3 cut(s)	268, 364, 523
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	4 cut(s)	45, 141, 198, 632
MaeII	ACGT	2 cut(s)	228, 742
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	3 cut(s)	361, 507, 608
MboI	GATC	3 cut(s)	359, 505, 606
MboII	GAAGA	6 cut(s)	53, 94, 336, 611, 677, 728
MflI	RGATCY	2 cut(s)	359, 505
MhlI	GDGCHC	2 cut(s)	448, 988
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	8 cut(s)	75, 191, 214, 233, 246, 334, 459, 1107
MluNI	TGGCCA	1 cut(s)	322
MlyI	GAGTC	1 cut(s)	685
MmeI	TCCRAC	1 cut(s)	1158
MnlI	CCTC	5 cut(s)	459, 467, 576, 784, 871
Mox20I	TGGCCA	1 cut(s)	322
MroXI	GAANNNNTTC	1 cut(s)	777
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	1 cut(s)	408
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	322
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	5 cut(s)	307, 371, 732, 937, 1151
Mva1269I	GAATGC	1 cut(s)	777
MvaI	CCWGG	4 cut(s)	371, 732, 937, 1151
MvnI	CGCG	1 cut(s)	287
MwoI	GCNNNNNNNGC	1 cut(s)	847
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	3 cut(s)	359, 505, 606
NlaIII	CATG	3 cut(s)	272, 482, 1055
NlaIV	GGNNCC	1 cut(s)	1027
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	53
PctI	GAATGC	1 cut(s)	777
PdmI	GAANNNNTTC	1 cut(s)	777
PfeI	GAWTC	4 cut(s)	99, 158, 170, 821
PfoI	TCCNGGA	2 cut(s)	369, 1149
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	685
PmaCI	CACGTG	1 cut(s)	743
PmlI	CACGTG	1 cut(s)	743
PpsI	GAGTC	1 cut(s)	685
Ppu21I	YACGTR	1 cut(s)	743
PpuMI	RGGWCCY	1 cut(s)	728
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	4 cut(s)	369, 730, 935, 1149
PspCI	CACGTG	1 cut(s)	743
PspGI	CCWGG	4 cut(s)	369, 730, 935, 1149
PspN4I	GGNNCC	1 cut(s)	1027
PspPI	GGNCC	1 cut(s)	728
PspPPI	RGGWCCY	1 cut(s)	728
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	2 cut(s)	359, 505
RsaI	GTAC	4 cut(s)	109, 151, 398, 571
RsaNI	GTAC	4 cut(s)	108, 150, 397, 570
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	408
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	359, 505, 606
Sau96I	GGNCC	1 cut(s)	728
ScaI	AGTACT	2 cut(s)	109, 398
SchI	GAGTC	1 cut(s)	685
ScrFI	CCNGG	5 cut(s)	307, 371, 732, 937, 1151
SduI	GDGCHC	2 cut(s)	448, 988
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	3 cut(s)	268, 364, 523
SfcI	CTRYAG	3 cut(s)	501, 546, 654
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	8 cut(s)	75, 191, 214, 233, 246, 334, 459, 1107
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	536
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	4 cut(s)	45, 141, 198, 632
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	5 cut(s)	305, 369, 730, 935, 1149
TaaI	ACNGT	2 cut(s)	70, 646
TaiI	ACGT	2 cut(s)	231, 745
TasI	AATT	8 cut(s)	75, 191, 214, 233, 246, 334, 459, 1107
TatI	WGTACW	4 cut(s)	107, 149, 396, 569
TauI	GCSGC	1 cut(s)	539
TfiI	GAWTC	4 cut(s)	99, 158, 170, 821
Tru1I	TTAA	1 cut(s)	408
Tru9I	TTAA	1 cut(s)	408
TscAI	CASTG	2 cut(s)	73, 1066
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	207, 254, 415, 495, 747
TspRI	CASTG	2 cut(s)	73, 1066
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	2 cut(s)	214, 459
XmnI	GAANNNNTTC	1 cut(s)	777
XspI	CTAG	4 cut(s)	45, 141, 198, 632
ZrmI	AGTACT	2 cut(s)	109, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.