Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Forward (+)

66222327 .. 66225759

Gene Structure 3433 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21535

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGACACAGGAGCTTATTGATTCCATATCTCTCCTCAGGTTCTCAACCTTGTCAGTTTCTCCCTCTCTACCTCTGCAAAAAAAAAAAACCCTAACCCTAATTCAACCGCAGTCACAAGGCAACCAAACCAGGAAAACCAGTTCATCGCTTTCAGCGCTCACCGCCACACTCATGTCTGCTGGATCAGGAATCTTCTGTACAATGAGAGAAGTCAAGGTGAAAGGTGTTTCGGGGTTGTGTACTCTTGATTCTGATAATGAATCGCAAATCCTACAATCTGAATCGGCTAGTGTCAGCCAGAGATGTTCATCTCCCAATGTGCAGTCCACGCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTATCGCACCCCATTTCAGTTCCACCCGGTTTGCTAAGTGGCCAAAAGTAGCCAATTTTTTATCTTCCTTACCTGCAGGAACTCTTGTGCTCGATGCAGGATGTGGAAATGGGAAGTACTTGGGATTTAATCCCAATTGTTTTTCCATAGGGTGTGACATAAGTGCTCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTTTTGGTTGCAGATGCTCTAGTTCTACCCTATAGAACTGGTTTTGGTGATGCAGCTATCTCTATAGCTGTATTACATCATCTGAGTACAGAGAGCAGGAGGAAAAAAGCAATCGAAGAGTTAGTCCGAGTTGTGAAAAAGGGTGGTCTAGTTCTAATCACAGTTTGGGCTGTGGAACAAGAAGATAAAGCATTAGTTTCTAAATGGACCCCACTCACCGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGTCCTCGTGTGCGTAGTCCGTCGTCCCGCACATTGGAAAGCATTCCAGAAACAGAGGATAGAATTTTGGGAGAGAATGTGAAACATTCCAACCAGAGTTCTGTGCAGACTTTGCAACAAATGCGCTCTCAAAATGAAGGTAATACAAGGGCTTCAGATGATATAAAGACTACAAATAATCAACAAGAATATTTCGTCCCCTGGCACTTGCCATATCATCGTGCTGAAATAAATGGTGCTTCGGCTTGTGCTGTTGCAAATGGCCTTGCAAAGAAAGATGATAAGAAGGGTGCTGTAGTGTACAACAGATATTACCATGTTTTTAGTGAAGGCGAGCTTGAAAGGCTGGTATCTGGTATGGATGATGCTGTAATTGTTGATCGATTTTTTGACAAATCCAACTGGTGTATTGTCCTTGAGAAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

418

Amino Acids

45.95

Weight (kDa)

8.0

Isoelectric Point (pI)

44.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_25	PF13649	153 - 240	5.3e-11	Methyltransferase domain
Methyltransf_11	PF08241	154 - 244	3.4e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	825
Acc36I	ACCTGC	1 cut(s)	451
AciI	CCGC	3 cut(s)	107, 162, 853
AclWI	GGATC	1 cut(s)	190
AcoI	YGGCCR	1 cut(s)	410
AcsI	RAATTY	2 cut(s)	549, 888
AcuI	CTGAAG	1 cut(s)	963
AfaI	GTAC	5 cut(s)	199, 241, 488, 661, 1127
AfeI	AGCGCT	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	859
AgsI	TTSAA	2 cut(s)	104, 1166
AjnI	CCWGG	3 cut(s)	128, 820, 1025
AloI	GAACNNNNNNTCC	2 cut(s)	124, 156
AluBI	AGCT	4 cut(s)	13, 629, 641, 1162
AluI	AGCT	4 cut(s)	13, 629, 641, 1162
Alw21I	GWGCWC	2 cut(s)	462, 538
AlwI	GGATC	1 cut(s)	190
Aor51HI	AGCGCT	1 cut(s)	156
AoxI	GGCC	2 cut(s)	410, 1087
ApeKI	GCWGC	1 cut(s)	626
ApoI	RAATTY	2 cut(s)	549, 888
ArsI	GACNNNNNNTTYG	2 cut(s)	681, 713
Asp700I	GAANNNNTTC	1 cut(s)	867
AspLEI	GCGC	2 cut(s)	157, 951
AspS9I	GGNCC	2 cut(s)	780, 818
AsuC2I	CCSGG	1 cut(s)	397
AsuHPI	GGTGA	4 cut(s)	151, 229, 632, 781
AvaII	GGWCC	2 cut(s)	780, 818
AxyI	CCTNAGG	1 cut(s)	35
BalI	TGGCCA	1 cut(s)	412
BauI	CACGAG	1 cut(s)	831
Bbv12I	GWGCWC	2 cut(s)	462, 538
BbvI	GCAGC	1 cut(s)	638
BccI	CCATC	1 cut(s)	363
BciT130I	CCWGG	3 cut(s)	130, 822, 1027
BcnI	CCSGG	1 cut(s)	397
BfaI	CTAG	3 cut(s)	288, 593, 722
BfmI	CTRYAG	4 cut(s)	444, 604, 636, 1119
BfoI	RGCGCY	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	628
BmcAI	AGTACT	1 cut(s)	488
Bme1390I	CCNGG	4 cut(s)	130, 397, 822, 1027
Bme18I	GGWCC	2 cut(s)	780, 818
BmgT120I	GGNCC	2 cut(s)	780, 818
BmiI	GGNNCC	1 cut(s)	782
BmrFI	CCNGG	4 cut(s)	130, 397, 822, 1027
BmsI	GCATC	5 cut(s)	358, 454, 577, 613, 1180
BpuMI	CCSGG	1 cut(s)	397
Bsa29I	ATCGAT	1 cut(s)	1207
BsaBI	GATNNNNATC	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	1025
BsaXI	ACNNNNNCTCC	2 cut(s)	888, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse1I	ACTGG	3 cut(s)	138, 616, 1232
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	130, 822, 1027
BseCI	ATCGAT	1 cut(s)	1207
BseDI	CCNNGG	1 cut(s)	1025
BseGI	GGATG	2 cut(s)	476, 1192
BseJI	GATNNNNATC	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMII	CTCAG	2 cut(s)	49, 647
BseNI	ACTGG	3 cut(s)	138, 616, 1232
BseRI	GAGGAG	2 cut(s)	23, 528
BseXI	GCAGC	1 cut(s)	638
BsgI	GTGCAG	3 cut(s)	341, 576, 950
BshFI	GGCC	2 cut(s)	412, 1089
BshVI	ATCGAT	1 cut(s)	1207
BsiHKAI	GWGCWC	2 cut(s)	462, 538
BsiSI	CCGG	1 cut(s)	397
BslFI	GGGAC	2 cut(s)	835, 1007
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmFI	GGGAC	2 cut(s)	835, 1007
BsmI	GAATGC	1 cut(s)	867
BsnI	GGCC	2 cut(s)	412, 1089
Bsp1286I	GDGCHC	2 cut(s)	462, 538
Bsp1407I	TGTACA	2 cut(s)	197, 1125
Bsp143I	GATC	2 cut(s)	182, 1204
BspACI	CCGC	3 cut(s)	107, 162, 853
BspANI	GGCC	2 cut(s)	412, 1089
BspCNI	CTCAG	2 cut(s)	48, 648
BspDI	ATCGAT	1 cut(s)	1207
BspLI	GGNNCC	1 cut(s)	782
BspMAI	CTGCAG	1 cut(s)	448
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	190
BsrGI	TGTACA	2 cut(s)	197, 1125
BsrI	ACTGG	3 cut(s)	138, 616, 1232
BssECI	CCNNGG	1 cut(s)	1025
BssMI	GATC	2 cut(s)	182, 1204
BssSI	CACGAG	1 cut(s)	831
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	3 cut(s)	130, 822, 1027
Bst4CI	ACNGT	1 cut(s)	736
Bst6I	CTCTTC	2 cut(s)	684, 801
BstAPI	GCANNNNNTGC	2 cut(s)	937, 946
BstAUI	TGTACA	2 cut(s)	197, 1125
BstC8I	GCNNGC	1 cut(s)	1160
BstDEI	CTNAG	3 cut(s)	35, 405, 656
BstF5I	GGATG	2 cut(s)	476, 1192
BstH2I	RGCGCY	1 cut(s)	158
BstHHI	GCGC	2 cut(s)	157, 951
BstKTI	GATC	2 cut(s)	185, 1207
BstMBI	GATC	2 cut(s)	182, 1204
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 161, 328, 937, 946, 1168
BstNI	CCWGG	3 cut(s)	130, 822, 1027
BstSCI	CCNGG	4 cut(s)	128, 395, 820, 1025
BstSFI	CTRYAG	4 cut(s)	444, 604, 636, 1119
BstV1I	GCAGC	1 cut(s)	638
Bsu15I	ATCGAT	1 cut(s)	1207
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	412, 1089
BsuTUI	ATCGAT	1 cut(s)	1207
BtgZI	GCGATG	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	476, 1192
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	1160
CfoI	GCGC	2 cut(s)	157, 951
Cfr13I	GGNCC	2 cut(s)	780, 818
ClaI	ATCGAT	1 cut(s)	1207
CsiI	ACCWGGT	1 cut(s)	820
Csp6I	GTAC	5 cut(s)	198, 240, 487, 660, 1126
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	4 cut(s)	172, 359, 569, 1142
CviQI	GTAC	5 cut(s)	198, 240, 487, 660, 1126
DdeI	CTNAG	3 cut(s)	35, 405, 656
DpnI	GATC	2 cut(s)	184, 1206
DpnII	GATC	2 cut(s)	182, 1204
DrdI	GACNNNNNNGTC	1 cut(s)	825
DseDI	GACNNNNNNGTC	1 cut(s)	825
EaeI	YGGCCR	1 cut(s)	410
Eam1104I	CTCTTC	2 cut(s)	684, 801
EarI	CTCTTC	2 cut(s)	684, 801
Eco47I	GGWCC	2 cut(s)	780, 818
Eco47III	AGCGCT	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	963
Eco81I	CCTNAGG	1 cut(s)	35
EcoO109I	RGGNCCY	1 cut(s)	818
EcoRII	CCWGG	3 cut(s)	128, 820, 1025
FaeI	CATG	4 cut(s)	175, 362, 572, 1145
FalI	AAGNNNNNCTT	2 cut(s)	1146, 1178
FaqI	GGGAC	2 cut(s)	835, 1007
FatI	CATG	4 cut(s)	171, 358, 568, 1141
FauI	CCCGC	1 cut(s)	860
Fnu4HI	GCNGC	1 cut(s)	627
FokI	GGATG	2 cut(s)	483, 1199
Fsp4HI	GCNGC	1 cut(s)	627
FspBI	CTAG	3 cut(s)	288, 593, 722
GlaI	GCGC	2 cut(s)	156, 950
GluI	GCNGC	1 cut(s)	627
HaeII	RGCGCY	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	412, 1089
HapII	CCGG	1 cut(s)	397
HhaI	GCGC	2 cut(s)	157, 951
Hin1II	CATG	4 cut(s)	175, 362, 572, 1145
Hin6I	GCGC	2 cut(s)	155, 949
HinP1I	GCGC	2 cut(s)	155, 949
HinfI	GANTC	5 cut(s)	20, 189, 248, 260, 281
HpaII	CCGG	1 cut(s)	397
HphI	GGTGA	4 cut(s)	151, 229, 632, 781
Hpy166II	GTNNAC	3 cut(s)	240, 327, 1126
Hpy188I	TCNGA	5 cut(s)	253, 280, 657, 701, 982
Hpy188III	TCNNGA	3 cut(s)	186, 245, 872
Hpy8I	GTNNAC	3 cut(s)	240, 327, 1126
Hpy99I	CGWCG	1 cut(s)	850
HpyAV	CCTTC	3 cut(s)	956, 1105, 1148
HpyCH4III	ACNGT	1 cut(s)	736
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 161, 328, 937, 946, 1168
HpyF3I	CTNAG	3 cut(s)	35, 405, 656
Hsp92II	CATG	4 cut(s)	175, 362, 572, 1145
HspAI	GCGC	2 cut(s)	155, 949
Kzo9I	GATC	2 cut(s)	182, 1204
LmnI	GCTCC	2 cut(s)	10, 541
Lsp1109I	GCAGC	1 cut(s)	638
LweI	GCATC	5 cut(s)	358, 454, 577, 613, 1180
MabI	ACCWGGT	1 cut(s)	820
MaeI	CTAG	3 cut(s)	288, 593, 722
MaeIII	GTNAC	2 cut(s)	111, 524
MalI	GATC	2 cut(s)	184, 1206
MboI	GATC	2 cut(s)	182, 1204
MboII	GAAGA	5 cut(s)	184, 426, 701, 767, 818
MfeI	CAATTG	1 cut(s)	505
MhlI	GDGCHC	2 cut(s)	462, 538
MlsI	TGGCCA	1 cut(s)	412
MluCI	AATT	6 cut(s)	99, 424, 505, 549, 888, 1197
MluNI	TGGCCA	1 cut(s)	412
MmeI	TCCRAC	2 cut(s)	939, 1248
MnlI	CCTC	8 cut(s)	44, 73, 81, 549, 557, 666, 840, 874
Mox20I	TGGCCA	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	867
MscI	TGGCCA	1 cut(s)	412
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	170, 363
Msp20I	TGGCCA	1 cut(s)	412
MspI	CCGG	1 cut(s)	397
MspR9I	CCNGG	4 cut(s)	130, 397, 822, 1027
MunI	CAATTG	1 cut(s)	505
Mva1269I	GAATGC	1 cut(s)	867
MvaI	CCWGG	3 cut(s)	130, 822, 1027
MwoI	GCNNNNNNNGC	6 cut(s)	154, 161, 328, 937, 946, 1168
NciI	CCSGG	1 cut(s)	397
NdeII	GATC	2 cut(s)	182, 1204
NlaIII	CATG	4 cut(s)	175, 362, 572, 1145
NlaIV	GGNNCC	1 cut(s)	782
NmuCI	GTSAC	2 cut(s)	111, 524
PctI	GAATGC	1 cut(s)	867
PdmI	GAANNNNTTC	1 cut(s)	867
PfeI	GAWTC	5 cut(s)	20, 189, 248, 260, 281
PkrI	GCNGC	1 cut(s)	628
PpuMI	RGGWCCY	1 cut(s)	818
Psp5II	RGGWCCY	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	128, 820, 1025
PspGI	CCWGG	3 cut(s)	128, 820, 1025
PspN4I	GGNNCC	1 cut(s)	782
PspPI	GGNCC	2 cut(s)	780, 818
PspPPI	RGGWCCY	1 cut(s)	818
PstI	CTGCAG	1 cut(s)	448
RsaI	GTAC	5 cut(s)	199, 241, 488, 661, 1127
RsaNI	GTAC	5 cut(s)	198, 240, 487, 660, 1126
RseI	CAYNNNNRTG	2 cut(s)	170, 363
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	1 cut(s)	627
Sau3AI	GATC	2 cut(s)	182, 1204
Sau96I	GGNCC	2 cut(s)	780, 818
SbfI	CCTGCAGG	1 cut(s)	448
ScaI	AGTACT	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	130, 397, 822, 1027
SdaI	CCTGCAGG	1 cut(s)	448
SduI	GDGCHC	2 cut(s)	462, 538
SexAI	ACCWGGT	1 cut(s)	820
SfaNI	GCATC	5 cut(s)	358, 454, 577, 613, 1180
SfcI	CTRYAG	4 cut(s)	444, 604, 636, 1119
SinI	GGWCC	2 cut(s)	780, 818
SmiMI	CAYNNNNRTG	2 cut(s)	170, 363
SmlI	CTYRAG	1 cut(s)	1241
SmoI	CTYRAG	1 cut(s)	1241
Sse8387I	CCTGCAGG	1 cut(s)	448
Sse9I	AATT	6 cut(s)	99, 424, 505, 549, 888, 1197
SsiI	CCGC	3 cut(s)	107, 162, 853
SspI	AATATT	1 cut(s)	1016
SspMI	CTAG	3 cut(s)	288, 593, 722
StyD4I	CCNGG	4 cut(s)	128, 395, 820, 1025
TaaI	ACNGT	1 cut(s)	736
TaqI	TCGA	3 cut(s)	462, 687, 1207
TasI	AATT	6 cut(s)	99, 424, 505, 549, 888, 1197
TatI	WGTACW	5 cut(s)	197, 239, 486, 659, 1125
TfiI	GAWTC	5 cut(s)	20, 189, 248, 260, 281
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	2 cut(s)	111, 524
TseI	GCWGC	1 cut(s)	626
Tsp45I	GTSAC	2 cut(s)	111, 524
TspDTI	ATGAA	5 cut(s)	132, 273, 297, 585, 975
TspGWI	ACGGA	1 cut(s)	834
VpaK11BI	GGWCC	2 cut(s)	780, 818
XapI	RAATTY	2 cut(s)	549, 888
XmnI	GAANNNNTTC	1 cut(s)	867
XspI	CTAG	3 cut(s)	288, 593, 722
ZrmI	AGTACT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.