Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002676.1

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

145476 .. 152017

Gene Structure 6542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002676.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

atgtctgctggatcaggattcttctgtacaatgagagaagtcaaggtgaaaggtgtttcggggttgtgtactcttgattctgataatgaatcgcaaatcctacaatctgaatcggctagtgtcagccagagatgttcatctccaaatgtgcagtccacgcctgaaatagaaaagaagtatgtccatcatgtttatgatgctatcgcaccccatttcagttccacccggtttgctaagtggccaaaagtagccaattttttatcttccttacctgcaggaactcttgtgctcgatgcaggatgtggaaatgggaagtacttgggatttaatcccaattgcttttccatagggtgtgacataagtgctcctcttatcaaaatttgtgcagatagagggcatgaagttttggttgcagatgctctagttctaccctatagaactggttttggtgatgcagctatctctatagctgtattacatcatctgagtacagagagcaggaggaaaaaagcaatcgaagagttagtccgagttgtgaaaaagggtggtctagttctaataacggtttgggctgtggaacaagaagataaagcattagtttctaaatggaccccactcaccgaaaagtatggagaagagtggataggacctggtagtcctcgtgtgcgtagtccgtcgtcccgcacattggaaagcattccagaaacagaggatagaattatgggagagaatgtgaaacattccaaccagagttctgtgcagactttgcaacaaatgcgctctcaaaatgaaggtaatacaagggcttcagatgatataaagactacaaataatcaacaagaatatttcgtcccctggcacttgccatatcatcgtgctgaaataaatggtgcttcggcttgtgctgttgcaaatggccttgcaaagaaagatgataagaagggtgctgtagtgtacaacagatattaccatgtttttagtgaaggcgagcttgaaaggctggtatctggtatggatgatgctgtaattgttgatcgattttttgacaaatccaactgctgtcaagctgctacccttgaagctgttgaagctccaaaagccgccctccatcactctcttgggcatcccatgtttcaccacctggaagaacccatagctctctgtggccgtccggacttggtcgatcacctcagcacgcctttgataccaaatttggagtcgtcgaaggccttcagctgctgcaatgatctgggtagcttgatttcccggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

423

Amino Acids

46.34

Weight (kDa)

6.25

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	654
Acc36I	ACCTGC	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	1171
AciI	CCGC	2 cut(s)	682, 1101
AclWI	GGATC	1 cut(s)	19
AcoI	YGGCCR	2 cut(s)	239, 1165
AcsI	RAATTY	2 cut(s)	378, 1210
AcuI	CTGAAG	2 cut(s)	792, 1216
AfaI	GTAC	5 cut(s)	28, 70, 317, 490, 956
AfiI	CCNNNNNNNGG	1 cut(s)	688
AgsI	TTSAA	3 cut(s)	995, 1079, 1088
AjnI	CCWGG	3 cut(s)	649, 854, 1140
AluBI	AGCT	9 cut(s)	458, 470, 991, 1067, 1082, 1091, 1157, 1236, 1257
AluI	AGCT	9 cut(s)	458, 470, 991, 1067, 1082, 1091, 1157, 1236, 1257
Alw21I	GWGCWC	2 cut(s)	291, 367
AlwI	GGATC	1 cut(s)	19
AlwNI	CAGNNNCTG	1 cut(s)	1239
Aor13HI	TCCGGA	1 cut(s)	1171
AoxI	GGCC	4 cut(s)	239, 916, 1165, 1227
ApeKI	GCWGC	4 cut(s)	455, 1067, 1236, 1239
ApoI	RAATTY	2 cut(s)	378, 1210
ArsI	GACNNNNNNTTYG	6 cut(s)	137, 169, 510, 542, 1202, 1234
Asp700I	GAANNNNTTC	2 cut(s)	696, 1229
AspLEI	GCGC	1 cut(s)	780
AspS9I	GGNCC	2 cut(s)	609, 647
AsuC2I	CCSGG	2 cut(s)	226, 1267
AsuHPI	GGTGA	5 cut(s)	58, 461, 610, 1127, 1178
AvaII	GGWCC	2 cut(s)	609, 647
BalI	TGGCCA	1 cut(s)	241
BauI	CACGAG	1 cut(s)	660
Bbv12I	GWGCWC	2 cut(s)	291, 367
BbvCI	CCTCAGC	1 cut(s)	1190
BbvI	GCAGC	4 cut(s)	467, 1054, 1223, 1226
BccI	CCATC	2 cut(s)	192, 1116
BceAI	ACGGC	1 cut(s)	1152
BciT130I	CCWGG	3 cut(s)	651, 856, 1142
BcnI	CCSGG	2 cut(s)	226, 1267
BfaI	CTAG	3 cut(s)	117, 422, 551
BfmI	CTRYAG	4 cut(s)	273, 433, 465, 948
BfuAI	ACCTGC	1 cut(s)	280
BisI	GCNGC	5 cut(s)	456, 1068, 1101, 1237, 1240
BlsI	GCNGC	5 cut(s)	457, 1069, 1102, 1238, 1241
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	5 cut(s)	226, 651, 856, 1142, 1267
Bme18I	GGWCC	2 cut(s)	609, 647
BmgT120I	GGNCC	2 cut(s)	609, 647
BmiI	GGNNCC	1 cut(s)	611
BmrFI	CCNGG	5 cut(s)	226, 651, 856, 1142, 1267
BmsI	GCATC	6 cut(s)	187, 283, 406, 442, 1009, 1132
Bpu10I	CCTNAGC	1 cut(s)	1190
BpuMI	CCSGG	2 cut(s)	226, 1267
Bsa29I	ATCGAT	1 cut(s)	1036
BsaBI	GATNNNNATC	1 cut(s)	136
BsaJI	CCNNGG	1 cut(s)	854
BsaWI	WCCGGW	1 cut(s)	1171
BsaXI	ACNNNNNCTCC	2 cut(s)	717, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	688
Bse1I	ACTGG	1 cut(s)	445
Bse3DI	GCAATG	1 cut(s)	1249
Bse8I	GATNNNNATC	1 cut(s)	136
BseAI	TCCGGA	1 cut(s)	1171
BseBI	CCWGG	3 cut(s)	651, 856, 1142
BseCI	ATCGAT	1 cut(s)	1036
BseDI	CCNNGG	1 cut(s)	854
BseGI	GGATG	3 cut(s)	305, 1021, 1123
BseJI	GATNNNNATC	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	688
BseMI	GCAATG	1 cut(s)	1249
BseMII	CTCAG	2 cut(s)	476, 1204
BseNI	ACTGG	1 cut(s)	445
BseRI	GAGGAG	1 cut(s)	357
BseXI	GCAGC	4 cut(s)	467, 1054, 1223, 1226
BsgI	GTGCAG	3 cut(s)	170, 405, 779
BshFI	GGCC	4 cut(s)	241, 918, 1167, 1229
BshVI	ATCGAT	1 cut(s)	1036
BsiHKAI	GWGCWC	2 cut(s)	291, 367
BsiSI	CCGG	3 cut(s)	226, 1172, 1267
BslFI	GGGAC	2 cut(s)	664, 836
BslI	CCNNNNNNNGG	1 cut(s)	688
BsmFI	GGGAC	2 cut(s)	664, 836
BsmI	GAATGC	1 cut(s)	696
BsnI	GGCC	4 cut(s)	241, 918, 1167, 1229
Bsp1286I	GDGCHC	2 cut(s)	291, 367
Bsp13I	TCCGGA	1 cut(s)	1171
Bsp1407I	TGTACA	2 cut(s)	26, 954
Bsp143I	GATC	4 cut(s)	11, 1033, 1183, 1246
BspACI	CCGC	2 cut(s)	682, 1101
BspANI	GGCC	4 cut(s)	241, 918, 1167, 1229
BspCNI	CTCAG	2 cut(s)	477, 1203
BspDI	ATCGAT	1 cut(s)	1036
BspEI	TCCGGA	1 cut(s)	1171
BspLI	GGNNCC	1 cut(s)	611
BspMAI	CTGCAG	1 cut(s)	277
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	1249
BsrGI	TGTACA	2 cut(s)	26, 954
BsrI	ACTGG	1 cut(s)	445
BssECI	CCNNGG	1 cut(s)	854
BssMI	GATC	4 cut(s)	11, 1033, 1183, 1246
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst2UI	CCWGG	3 cut(s)	651, 856, 1142
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	2 cut(s)	513, 630
BstAPI	GCANNNNNTGC	2 cut(s)	766, 775
BstAUI	TGTACA	2 cut(s)	26, 954
BstC8I	GCNNGC	2 cut(s)	989, 1196
BstDEI	CTNAG	3 cut(s)	234, 485, 1190
BstF5I	GGATG	3 cut(s)	305, 1021, 1123
BstHHI	GCGC	1 cut(s)	780
BstKTI	GATC	4 cut(s)	14, 1036, 1186, 1249
BstMBI	GATC	4 cut(s)	11, 1033, 1183, 1246
BstMWI	GCNNNNNNNGC	6 cut(s)	157, 766, 775, 997, 1088, 1097
BstNI	CCWGG	3 cut(s)	651, 856, 1142
BstSCI	CCNGG	5 cut(s)	224, 649, 854, 1140, 1265
BstSFI	CTRYAG	4 cut(s)	273, 433, 465, 948
BstV1I	GCAGC	4 cut(s)	467, 1054, 1223, 1226
Bsu15I	ATCGAT	1 cut(s)	1036
BsuRI	GGCC	4 cut(s)	241, 918, 1167, 1229
BsuTUI	ATCGAT	1 cut(s)	1036
BtsCI	GGATG	3 cut(s)	305, 1021, 1123
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	2 cut(s)	989, 1196
CaiI	CAGNNNCTG	1 cut(s)	1239
CfoI	GCGC	1 cut(s)	780
Cfr13I	GGNCC	2 cut(s)	609, 647
ClaI	ATCGAT	1 cut(s)	1036
CsiI	ACCWGGT	1 cut(s)	649
Csp6I	GTAC	5 cut(s)	27, 69, 316, 489, 955
CspCI	CAANNNNNGTGG	2 cut(s)	211, 246
CviAII	CATG	4 cut(s)	188, 398, 971, 1129
CviQI	GTAC	5 cut(s)	27, 69, 316, 489, 955
DdeI	CTNAG	3 cut(s)	234, 485, 1190
DpnI	GATC	4 cut(s)	13, 1035, 1185, 1248
DpnII	GATC	4 cut(s)	11, 1033, 1183, 1246
DrdI	GACNNNNNNGTC	1 cut(s)	654
DseDI	GACNNNNNNGTC	1 cut(s)	654
EaeI	YGGCCR	2 cut(s)	239, 1165
Eam1104I	CTCTTC	2 cut(s)	513, 630
EarI	CTCTTC	2 cut(s)	513, 630
Eco147I	AGGCCT	1 cut(s)	1229
Eco47I	GGWCC	2 cut(s)	609, 647
Eco57I	CTGAAG	2 cut(s)	792, 1216
EcoO109I	RGGNCCY	1 cut(s)	647
EcoRII	CCWGG	3 cut(s)	649, 854, 1140
FaeI	CATG	4 cut(s)	191, 401, 974, 1132
FalI	AAGNNNNNCTT	2 cut(s)	975, 1007
FaqI	GGGAC	2 cut(s)	664, 836
FatI	CATG	4 cut(s)	187, 397, 970, 1128
FauI	CCCGC	1 cut(s)	689
Fnu4HI	GCNGC	5 cut(s)	456, 1068, 1101, 1237, 1240
FokI	GGATG	3 cut(s)	312, 1028, 1110
Fsp4HI	GCNGC	5 cut(s)	456, 1068, 1101, 1237, 1240
FspBI	CTAG	3 cut(s)	117, 422, 551
GlaI	GCGC	1 cut(s)	779
GluI	GCNGC	5 cut(s)	456, 1068, 1101, 1237, 1240
HaeIII	GGCC	4 cut(s)	241, 918, 1167, 1229
HapII	CCGG	3 cut(s)	226, 1172, 1267
HhaI	GCGC	1 cut(s)	780
Hin1II	CATG	4 cut(s)	191, 401, 974, 1132
Hin6I	GCGC	1 cut(s)	778
HinP1I	GCGC	1 cut(s)	778
HinfI	GANTC	5 cut(s)	18, 77, 89, 110, 1217
HpaII	CCGG	3 cut(s)	226, 1172, 1267
HphI	GGTGA	5 cut(s)	58, 461, 610, 1127, 1178
Hpy166II	GTNNAC	3 cut(s)	69, 156, 955
Hpy188I	TCNGA	5 cut(s)	82, 109, 486, 530, 811
Hpy188III	TCNNGA	4 cut(s)	15, 74, 701, 1172
Hpy8I	GTNNAC	3 cut(s)	69, 156, 955
Hpy99I	CGWCG	2 cut(s)	679, 1225
HpyAV	CCTTC	5 cut(s)	785, 934, 977, 1219, 1240
HpyCH4III	ACNGT	1 cut(s)	565
HpyF10VI	GCNNNNNNNGC	6 cut(s)	157, 766, 775, 997, 1088, 1097
HpyF3I	CTNAG	3 cut(s)	234, 485, 1190
Hsp92II	CATG	4 cut(s)	191, 401, 974, 1132
HspAI	GCGC	1 cut(s)	778
Kpn2I	TCCGGA	1 cut(s)	1171
Kzo9I	GATC	4 cut(s)	11, 1033, 1183, 1246
LmnI	GCTCC	2 cut(s)	370, 1096
Lsp1109I	GCAGC	4 cut(s)	467, 1054, 1223, 1226
LweI	GCATC	6 cut(s)	187, 283, 406, 442, 1009, 1132
MabI	ACCWGGT	1 cut(s)	649
MaeI	CTAG	3 cut(s)	117, 422, 551
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	13, 1035, 1185, 1248
MboI	GATC	4 cut(s)	11, 1033, 1183, 1246
MboII	GAAGA	6 cut(s)	13, 255, 530, 596, 647, 1157
MfeI	CAATTG	1 cut(s)	334
MhlI	GDGCHC	2 cut(s)	291, 367
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	6 cut(s)	253, 334, 378, 717, 1026, 1210
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	1226
MmeI	TCCRAC	2 cut(s)	768, 1077
MnlI	CCTC	7 cut(s)	378, 386, 495, 669, 703, 1115, 1199
Mox20I	TGGCCA	1 cut(s)	241
MroI	TCCGGA	1 cut(s)	1171
MroXI	GAANNNNTTC	2 cut(s)	696, 1229
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	327
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	1236
MspI	CCGG	3 cut(s)	226, 1172, 1267
MspR9I	CCNGG	5 cut(s)	226, 651, 856, 1142, 1267
MunI	CAATTG	1 cut(s)	334
Mva1269I	GAATGC	1 cut(s)	696
MvaI	CCWGG	3 cut(s)	651, 856, 1142
MwoI	GCNNNNNNNGC	6 cut(s)	157, 766, 775, 997, 1088, 1097
NciI	CCSGG	2 cut(s)	226, 1267
NdeII	GATC	4 cut(s)	11, 1033, 1183, 1246
NlaIII	CATG	4 cut(s)	191, 401, 974, 1132
NlaIV	GGNNCC	1 cut(s)	611
NmuCI	GTSAC	1 cut(s)	353
PceI	AGGCCT	1 cut(s)	1229
PctI	GAATGC	1 cut(s)	696
PdmI	GAANNNNTTC	2 cut(s)	696, 1229
PfeI	GAWTC	4 cut(s)	18, 77, 89, 110
PflFI	GACNNNGTC	1 cut(s)	1178
PkrI	GCNGC	5 cut(s)	457, 1069, 1102, 1238, 1241
PleI	GAGTC	1 cut(s)	1225
PpsI	GAGTC	1 cut(s)	1225
PpuMI	RGGWCCY	1 cut(s)	647
Psp5II	RGGWCCY	1 cut(s)	647
Psp6I	CCWGG	3 cut(s)	649, 854, 1140
PspGI	CCWGG	3 cut(s)	649, 854, 1140
PspN4I	GGNNCC	1 cut(s)	611
PspPI	GGNCC	2 cut(s)	609, 647
PspPPI	RGGWCCY	1 cut(s)	647
PstI	CTGCAG	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	1239
PsyI	GACNNNGTC	1 cut(s)	1178
PvuII	CAGCTG	1 cut(s)	1236
RsaI	GTAC	5 cut(s)	28, 70, 317, 490, 956
RsaNI	GTAC	5 cut(s)	27, 69, 316, 489, 955
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	327
SatI	GCNGC	5 cut(s)	456, 1068, 1101, 1237, 1240
Sau3AI	GATC	4 cut(s)	11, 1033, 1183, 1246
Sau96I	GGNCC	2 cut(s)	609, 647
SbfI	CCTGCAGG	1 cut(s)	277
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	1 cut(s)	1226
ScrFI	CCNGG	5 cut(s)	226, 651, 856, 1142, 1267
SdaI	CCTGCAGG	1 cut(s)	277
SduI	GDGCHC	2 cut(s)	291, 367
SexAI	ACCWGGT	1 cut(s)	649
SfaNI	GCATC	6 cut(s)	187, 283, 406, 442, 1009, 1132
SfcI	CTRYAG	4 cut(s)	273, 433, 465, 948
SinI	GGWCC	2 cut(s)	609, 647
SmiMI	CAYNNNNRTG	1 cut(s)	192
Sse8387I	CCTGCAGG	1 cut(s)	277
Sse9I	AATT	6 cut(s)	253, 334, 378, 717, 1026, 1210
SseBI	AGGCCT	1 cut(s)	1229
SsiI	CCGC	2 cut(s)	682, 1101
SspI	AATATT	1 cut(s)	845
SspMI	CTAG	3 cut(s)	117, 422, 551
StuI	AGGCCT	1 cut(s)	1229
StyD4I	CCNGG	5 cut(s)	224, 649, 854, 1140, 1265
TaaI	ACNGT	1 cut(s)	565
TaqI	TCGA	5 cut(s)	291, 516, 1036, 1182, 1223
TasI	AATT	6 cut(s)	253, 334, 378, 717, 1026, 1210
TatI	WGTACW	5 cut(s)	26, 68, 315, 488, 954
TauI	GCSGC	1 cut(s)	1103
TfiI	GAWTC	4 cut(s)	18, 77, 89, 110
Tru1I	TTAA	1 cut(s)	327
Tru9I	TTAA	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	4 cut(s)	455, 1067, 1236, 1239
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	4 cut(s)	102, 126, 414, 804
TspGWI	ACGGA	1 cut(s)	663
Tth111I	GACNNNGTC	1 cut(s)	1178
VpaK11BI	GGWCC	2 cut(s)	609, 647
XapI	RAATTY	2 cut(s)	378, 1210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1115
XmnI	GAANNNNTTC	2 cut(s)	696, 1229
XspI	CTAG	3 cut(s)	117, 422, 551
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.