Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Forward (+)

28296384 .. 28300775

Gene Structure 4392 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g38270.t11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTCTTCTGGGTCAGATAGAGGGCATGAAGTTTTGGTTGCAGATGCTTTAGTTCTACCCTATAGAACTGGTTTTGGTGATGCAGCTATCTCCATAGCTGTATTACATCATCTGAGTACAGAGAGCAGGAGGAAAAAAGCAATTGAAGAGTTAGTCCGAGTTGTGAAAAAGGGTGGTCTTGTTCTAATAACAGTTTGGGCTGTGGAACAAGAAGATAAAGCATTGGTTTCTAGATGGACTCCACTCACTGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGCCCTCGTGTGCGTAGTCCTTCGTCCCGCACATTAGAAAGCATTCCAGAAACAGAGGATAGAATTTTGGGAGATAATGAGAAAGATTCCAACCAGAGTTCTGTGCAGACTTTGCAACAAATGCCCTCTCAAGATAAAGGCATTACAAGGGCTTCTGATGATATAAAGGATACAAACAATCAACAAGAATATTTCGTCCCCTGGCACTTGCCTTATCATCGTGCTGAAGTAAATGGGGCTTCAGCTTGTGCTGTTGCTAATGGCCTTGCAAAGAAGGATGATAAGAAGGGAGCAGTAGTGTACAACAGATATTACCATGTTTTTAGTGAAGGCGAGCTTGAAAGGCTGGTATCTGGTATGGATGATGCTGTAATTGTTGATCGATTTTTTGACAAATCCAACTGGTGTATTGTCCTTGAGAAAACATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

238

Amino Acids

26.47

Weight (kDa)

5.59

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_25	PF13649	162 - 249	9.8e-11	Methyltransferase domain
Methyltransf_11	PF08241	163 - 253	7e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	345
AcuI	CTGAAG	2 cut(s)	507, 528
AfaI	GTAC	2 cut(s)	118, 584
AgsI	TTSAA	2 cut(s)	146, 623
AjnI	CCWGG	2 cut(s)	277, 482
AluBI	AGCT	4 cut(s)	86, 98, 527, 619
AluI	AGCT	4 cut(s)	86, 98, 527, 619
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	345
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	275
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	275
BauI	CACGAG	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	95
BccI	CCATC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	279, 484
BciVI	GTATCC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	231
BfmI	CTRYAG	1 cut(s)	61
BfuI	GTATCC	1 cut(s)	445
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	279, 484
Bme18I	GGWCC	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	279, 484
BmsI	GCATC	3 cut(s)	34, 70, 637
BpuEI	CTTGAG	1 cut(s)	396
Bsa29I	ATCGAT	1 cut(s)	664
BsaJI	CCNNGG	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bse1I	ACTGG	2 cut(s)	73, 689
BseBI	CCWGG	2 cut(s)	279, 484
BseCI	ATCGAT	1 cut(s)	664
BseDI	CCNNGG	1 cut(s)	482
BseGI	GGATG	2 cut(s)	565, 649
BseMII	CTCAG	1 cut(s)	104
BseNI	ACTGG	2 cut(s)	73, 689
BseXI	GCAGC	1 cut(s)	95
BsgI	GTGCAG	1 cut(s)	407
BshFI	GGCC	1 cut(s)	546
BshVI	ATCGAT	1 cut(s)	664
BslFI	GGGAC	2 cut(s)	292, 464
BsmFI	GGGAC	2 cut(s)	292, 464
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	546
Bsp1407I	TGTACA	1 cut(s)	582
Bsp143I	GATC	1 cut(s)	661
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	105
BspDI	ATCGAT	1 cut(s)	664
BsrGI	TGTACA	1 cut(s)	582
BsrI	ACTGG	2 cut(s)	73, 689
BssECI	CCNNGG	1 cut(s)	482
BssMI	GATC	1 cut(s)	661
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst2UI	CCWGG	2 cut(s)	279, 484
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	141, 258
BstAPI	GCANNNNNTGC	2 cut(s)	394, 403
BstAUI	TGTACA	1 cut(s)	582
BstC8I	GCNNGC	1 cut(s)	617
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	565, 649
BstKTI	GATC	1 cut(s)	664
BstMBI	GATC	1 cut(s)	661
BstMWI	GCNNNNNNNGC	3 cut(s)	394, 403, 625
BstNI	CCWGG	2 cut(s)	279, 484
BstSCI	CCNGG	2 cut(s)	277, 482
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	95
Bsu15I	ATCGAT	1 cut(s)	664
BsuI	GTATCC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	546
BsuTUI	ATCGAT	1 cut(s)	664
BtsCI	GGATG	2 cut(s)	565, 649
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	617
Cfr13I	GGNCC	1 cut(s)	275
ClaI	ATCGAT	1 cut(s)	664
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	2 cut(s)	117, 583
CviAII	CATG	2 cut(s)	26, 599
CviQI	GTAC	2 cut(s)	117, 583
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	1 cut(s)	663
DpnII	GATC	1 cut(s)	661
Eam1104I	CTCTTC	2 cut(s)	141, 258
EarI	CTCTTC	2 cut(s)	141, 258
Eco47I	GGWCC	1 cut(s)	275
Eco57I	CTGAAG	2 cut(s)	507, 528
EcoO109I	RGGNCCY	1 cut(s)	275
EcoRII	CCWGG	2 cut(s)	277, 482
FaeI	CATG	2 cut(s)	29, 602
FaiI	YATR	8 cut(s)	27, 63, 95, 258, 446, 600, 641, 712
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	2 cut(s)	292, 464
FatI	CATG	2 cut(s)	25, 598
FauI	CCCGC	1 cut(s)	317
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	2 cut(s)	572, 656
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	546
Hin1II	CATG	2 cut(s)	29, 602
HinfI	GANTC	2 cut(s)	238, 368
HphI	GGTGA	1 cut(s)	89
Hpy166II	GTNNAC	1 cut(s)	583
Hpy188I	TCNGA	4 cut(s)	16, 114, 158, 439
Hpy188III	TCNNGA	3 cut(s)	231, 329, 413
Hpy8I	GTNNAC	1 cut(s)	583
HpyAV	CCTTC	4 cut(s)	312, 550, 562, 605
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4V	TGCA	5 cut(s)	41, 83, 388, 397, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	394, 403, 625
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	29, 602
Kzo9I	GATC	1 cut(s)	661
LmnI	GCTCC	1 cut(s)	572
Lsp1109I	GCAGC	1 cut(s)	95
LweI	GCATC	3 cut(s)	34, 70, 637
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	1 cut(s)	231
MalI	GATC	1 cut(s)	663
MboI	GATC	1 cut(s)	661
MboII	GAAGA	3 cut(s)	158, 224, 275
MfeI	CAATTG	1 cut(s)	141
MluCI	AATT	3 cut(s)	141, 345, 654
MlyI	GAGTC	1 cut(s)	232
MmeI	TCCRAC	2 cut(s)	396, 705
MnlI	CCTC	5 cut(s)	14, 123, 297, 331, 418
MroXI	GAANNNNTTC	1 cut(s)	324
MspR9I	CCNGG	2 cut(s)	279, 484
MunI	CAATTG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	2 cut(s)	279, 484
MwoI	GCNNNNNNNGC	3 cut(s)	394, 403, 625
NdeII	GATC	1 cut(s)	661
NlaIII	CATG	2 cut(s)	29, 602
PctI	GAATGC	1 cut(s)	324
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	368
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	232
PpuMI	RGGWCCY	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	275
Psp6I	CCWGG	2 cut(s)	277, 482
PspGI	CCWGG	2 cut(s)	277, 482
PspPI	GGNCC	1 cut(s)	275
PspPPI	RGGWCCY	1 cut(s)	275
RsaI	GTAC	2 cut(s)	118, 584
RsaNI	GTAC	2 cut(s)	117, 583
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	661
Sau96I	GGNCC	1 cut(s)	275
SchI	GAGTC	1 cut(s)	232
ScrFI	CCNGG	2 cut(s)	279, 484
SetI	ASST	5 cut(s)	88, 100, 280, 529, 621
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	3 cut(s)	34, 70, 637
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	411, 698
SmoI	CTYRAG	2 cut(s)	411, 698
Sse9I	AATT	3 cut(s)	141, 345, 654
SsiI	CCGC	1 cut(s)	310
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	2 cut(s)	277, 482
TaaI	ACNGT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	664
TasI	AATT	3 cut(s)	141, 345, 654
TatI	WGTACW	2 cut(s)	116, 582
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	275
XapI	RAATTY	1 cut(s)	345
XbaI	TCTAGA	1 cut(s)	230
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.