Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004043

Physical Location & Seq

Genomic Coordinates Reverse (-)

21245385 .. 21249121

Gene Structure 3737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1174900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGTTTTGTAACATTCTAAAAGCAAGTAGATGCTATTATCTGTCTAGAGAGGCCTTCCGTCTTCCCTCTGTGATCATTGGTAGTGTTTCTTATTCAGGAATCTTCACTACCATGAGAGAAGTCAAGGTTAAAGGTGCGTCTGGTTCTTGTTCTCTGGATTCTGGTGAAGAATCTCAGATCCTACAATCTGAATCGGCTAGTGACAGCCATAGACAGGCATCCTTAAATGTGCAGTTCACTCCTGAAATAGAAAAGAAGTATGTCCATCATGTTTATGATGCTATCGCACCTCATTTTAGTTCAACCCGGTTTGCTAAGTGGCCAAAAGTAGCCAATTTTCTATCTTCCTTACCTTCAGGATCTCTTGTTCTTGATGCGGGATGTGGGAATGGGAAGTACTTGGGATTTAATCCTGATTGTTTTTTCATTGGATGTGATATAAGTGCTCCTCTTATCAAAATTTGTGCAGATAGAGGGCATGAAGTGTTGGTTGCAGATGCCGTAGACCTTCCATATAGAACTGGTTTTGGTGATGCAGCTATATCCATAGCTGTATTACATCATCTCAGTACGGAGGGTAGGAGGAAGAAAGCAATTGAAGAGTTGATCCGAGTTGTGAGAAAGGGTGGCTTAGTTCTAATAACAGTTTGGGCTGTAGAACAAGAAGATAAATCATTAGTTGCAAAATGGACTCCACTTACCGAAAAGTATGGAGAAGAGTGGATAGGACCTGGTAGTCCTCATGTTCGTAGTCCTTCATCTCGCACATTGCAAAGCATCCCAGAAACAGAGGAGAGTAGTTTGGGAGAGTGTAAGAAAGAGTCCGACCAGAGTGCTACACAGAGTTTGCAAGAAAAAACCTCTCAAAGTGAGAGTTATTTGGGGACTTCTTGTGATGTGAAAGATGCAAATGATCAACAAGAATATTTTGTCCCCTGGCACTTGCCATATCACCGTGCTGAAGTAAGTGGTGCTTCTGCTTGCGCTCTTGCAAATGGCCTTGCAAAGAAAGATGATAAAAAGGGTGCTGTTGTGTACAACAGATATTACCATGTTTTCATTGAAGGCGAGCTTGAAAGATTAGTAGCTGGGATGAAAGACGCTGTAATTGTTGATCGATTTTTCGACAAATCCAACTGGTGCATTGTCCTCAAGAAAACGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000049 GO:0001510 GO:0002097 GO:0002098 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0005488 GO:0005506 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008168 GO:0008173 GO:0008175 GO:0008198 GO:0008270 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016300 GO:0016491 GO:0016705 GO:0016706 GO:0016740 GO:0016741 GO:0030488 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0051213 GO:0055114 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:0140101 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_11 Rad60-SLD_2

Protein Analysis

389

Amino Acids

42.85

Weight (kDa)

6.43

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Methyltransf_23	PF13489	102 - 257	1.2e-06	Methyltransferase domain
Methyltransf_31	PF13847	120 - 229	2.3e-06	Methyltransferase domain
Methyltransf_25	PF13649	123 - 210	2e-11	Methyltransferase domain
Methyltransf_11	PF08241	124 - 214	4.4e-14	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G36310 AT1G36310
fragaria_vesca	FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270 FvH4_5g38270
malus_domestica	MD08G1174900.v1.1
prunus_persica	Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1 Prupe.1G509000_v2.0.a1
pyrus_communis	pycom08g15020
rosa_chinensis	RchiOBHm_Chr7g0240261
rosa_laevigata	RLG00000000690
rosa_multiflora	Rmu_co8481587.1_g000001 Rmu_sc0002676.1_g000020
rosa_roxburghii	Rroxscaffold_3G00220270
rosa_rugosa	Rorug07G0334500 Rorug07G0334500
rosa_samantha	Rh7AG488500 Rh7BG461400 Rh7CG504700 Rh7DG472800
rosa_wichuraiana	Rw7G040890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	735
AccI	GTMKAC	1 cut(s)	504
AciI	CCGC	1 cut(s)	377
AclI	AACGTT	1 cut(s)	1160
AclWI	GGATC	3 cut(s)	172, 367, 601
AcoI	YGGCCR	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	459
AcuI	CTGAAG	2 cut(s)	339, 981
AfaI	GTAC	3 cut(s)	398, 571, 1037
AfiI	CCNNNNNNNGG	1 cut(s)	214
AgsI	TTSAA	4 cut(s)	303, 599, 1064, 1076
AjnI	CCWGG	2 cut(s)	730, 935
AloI	GAACNNNNNNTCC	2 cut(s)	351, 383
AluBI	AGCT	4 cut(s)	539, 551, 1072, 1088
AluI	AGCT	4 cut(s)	539, 551, 1072, 1088
Alw21I	GWGCWC	1 cut(s)	448
AlwI	GGATC	3 cut(s)	172, 367, 601
AoxI	GGCC	3 cut(s)	51, 320, 997
ApeKI	GCWGC	1 cut(s)	536
ApoI	RAATTY	1 cut(s)	459
AspLEI	GCGC	1 cut(s)	986
AspS9I	GGNCC	1 cut(s)	728
AsuC2I	CCSGG	1 cut(s)	307
AsuHPI	GGTGA	3 cut(s)	176, 542, 944
AvaII	GGWCC	1 cut(s)	728
BalI	TGGCCA	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	53
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	1 cut(s)	548
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	1 cut(s)	485
BcgI	CGANNNNNNTGC	2 cut(s)	815, 849
BciT130I	CCWGG	2 cut(s)	732, 937
BclI	TGATCA	2 cut(s)	72, 913
BcnI	CCSGG	1 cut(s)	307
BfaI	CTAG	2 cut(s)	45, 198
BfmI	CTRYAG	1 cut(s)	654
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	3 cut(s)	307, 732, 937
Bme18I	GGWCC	1 cut(s)	728
BmgT120I	GGNCC	1 cut(s)	728
BmrFI	CCNGG	3 cut(s)	307, 732, 937
BmsI	GCATC	8 cut(s)	20, 227, 268, 364, 487, 523, 786, 895
BpiI	GAAGAC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	1136
BpuMI	CCSGG	1 cut(s)	307
Bsa29I	ATCGAT	1 cut(s)	1117
BsaJI	CCNNGG	1 cut(s)	935
Bsc4I	CCNNNNNNNGG	1 cut(s)	214
Bse1I	ACTGG	2 cut(s)	526, 1142
Bse3DI	GCAATG	1 cut(s)	767
BseBI	CCWGG	2 cut(s)	732, 937
BseCI	ATCGAT	1 cut(s)	1117
BseDI	CCNNGG	1 cut(s)	935
BseGI	GGATG	5 cut(s)	218, 386, 437, 777, 1098
BseLI	CCNNNNNNNGG	1 cut(s)	214
BseMI	GCAATG	1 cut(s)	767
BseMII	CTCAG	2 cut(s)	188, 580
BseNI	ACTGG	2 cut(s)	526, 1142
BseRI	GAGGAG	2 cut(s)	438, 806
BseXI	GCAGC	1 cut(s)	548
BseYI	CCCAGC	1 cut(s)	1088
BsgI	GTGCAG	2 cut(s)	251, 486
BshFI	GGCC	3 cut(s)	53, 322, 999
BshVI	ATCGAT	1 cut(s)	1117
BsiHKAI	GWGCWC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	307
BslFI	GGGAC	2 cut(s)	898, 917
BslI	CCNNNNNNNGG	1 cut(s)	214
BsmFI	GGGAC	2 cut(s)	898, 917
BsnI	GGCC	3 cut(s)	53, 322, 999
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
BspACI	CCGC	1 cut(s)	377
BspANI	GGCC	3 cut(s)	53, 322, 999
BspCNI	CTCAG	2 cut(s)	187, 579
BspDI	ATCGAT	1 cut(s)	1117
BspPI	GGATC	3 cut(s)	172, 367, 601
BsrDI	GCAATG	1 cut(s)	767
BsrGI	TGTACA	1 cut(s)	1035
BsrI	ACTGG	2 cut(s)	526, 1142
BssECI	CCNNGG	1 cut(s)	935
BssMI	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
Bst2UI	CCWGG	2 cut(s)	732, 937
Bst4CI	ACNGT	2 cut(s)	646, 956
Bst6I	CTCTTC	2 cut(s)	594, 711
BstAUI	TGTACA	1 cut(s)	1035
BstC8I	GCNNGC	2 cut(s)	982, 1070
BstDEI	CTNAG	4 cut(s)	174, 315, 566, 631
BstF5I	GGATG	5 cut(s)	218, 386, 437, 777, 1098
BstHHI	GCGC	1 cut(s)	986
BstKTI	GATC	6 cut(s)	75, 180, 362, 609, 916, 1117
BstMBI	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
BstNI	CCWGG	2 cut(s)	732, 937
BstSCI	CCNGG	3 cut(s)	305, 730, 935
BstSFI	CTRYAG	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	53
BstX2I	RGATCY	2 cut(s)	177, 359
BstYI	RGATCY	2 cut(s)	177, 359
Bsu15I	ATCGAT	1 cut(s)	1117
BsuRI	GGCC	3 cut(s)	53, 322, 999
BsuTUI	ATCGAT	1 cut(s)	1117
BtsCI	GGATG	5 cut(s)	218, 386, 437, 777, 1098
Cac8I	GCNNGC	2 cut(s)	982, 1070
CfoI	GCGC	1 cut(s)	986
Cfr13I	GGNCC	1 cut(s)	728
ClaI	ATCGAT	1 cut(s)	1117
CseI	GACGC	2 cut(s)	126, 1109
CsiI	ACCWGGT	1 cut(s)	730
Csp6I	GTAC	3 cut(s)	397, 570, 1036
CviAII	CATG	5 cut(s)	112, 269, 479, 743, 1052
CviQI	GTAC	3 cut(s)	397, 570, 1036
DdeI	CTNAG	4 cut(s)	174, 315, 566, 631
DpnI	GATC	6 cut(s)	74, 179, 361, 608, 915, 1116
DpnII	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
DrdI	GACNNNNNNGTC	1 cut(s)	735
DseDI	GACNNNNNNGTC	1 cut(s)	735
EaeI	YGGCCR	1 cut(s)	320
Eam1104I	CTCTTC	2 cut(s)	594, 711
EarI	CTCTTC	2 cut(s)	594, 711
Eco147I	AGGCCT	1 cut(s)	53
Eco47I	GGWCC	1 cut(s)	728
Eco57I	CTGAAG	2 cut(s)	339, 981
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	730, 935
FaeI	CATG	5 cut(s)	115, 272, 482, 746, 1055
FalI	AAGNNNNNCTT	6 cut(s)	614, 646, 958, 990, 1056, 1088
FaqI	GGGAC	2 cut(s)	898, 917
FatI	CATG	5 cut(s)	111, 268, 478, 742, 1051
FauI	CCCGC	1 cut(s)	370
FbaI	TGATCA	2 cut(s)	72, 913
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	5 cut(s)	205, 393, 444, 764, 1105
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	2 cut(s)	45, 198
GlaI	GCGC	1 cut(s)	985
GluI	GCNGC	1 cut(s)	537
GsaI	CCCAGC	1 cut(s)	1092
HaeIII	GGCC	3 cut(s)	53, 322, 999
HapII	CCGG	1 cut(s)	307
HgaI	GACGC	2 cut(s)	126, 1109
HhaI	GCGC	1 cut(s)	986
Hin1II	CATG	5 cut(s)	115, 272, 482, 746, 1055
Hin6I	GCGC	1 cut(s)	984
HinP1I	GCGC	1 cut(s)	984
HinfI	GANTC	6 cut(s)	99, 158, 170, 191, 691, 821
HpaII	CCGG	1 cut(s)	307
HphI	GGTGA	3 cut(s)	176, 542, 944
Hpy166II	GTNNAC	3 cut(s)	237, 505, 1036
Hpy188I	TCNGA	4 cut(s)	177, 190, 611, 826
Hpy188III	TCNNGA	8 cut(s)	45, 96, 155, 242, 357, 371, 413, 1153
Hpy8I	GTNNAC	3 cut(s)	237, 505, 1036
HpyAV	CCTTC	5 cut(s)	64, 363, 518, 765, 1058
HpyCH4III	ACNGT	2 cut(s)	646, 956
HpyCH4IV	ACGT	1 cut(s)	1160
HpyF3I	CTNAG	4 cut(s)	174, 315, 566, 631
HpySE526I	ACGT	1 cut(s)	1160
Hsp92II	CATG	5 cut(s)	115, 272, 482, 746, 1055
HspAI	GCGC	1 cut(s)	984
Ksp22I	TGATCA	2 cut(s)	72, 913
Kzo9I	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
LmnI	GCTCC	1 cut(s)	451
Lsp1109I	GCAGC	1 cut(s)	548
LweI	GCATC	8 cut(s)	20, 227, 268, 364, 487, 523, 786, 895
MabI	ACCWGGT	1 cut(s)	730
MaeI	CTAG	2 cut(s)	45, 198
MaeII	ACGT	1 cut(s)	1160
MaeIII	GTNAC	2 cut(s)	8, 200
MalI	GATC	6 cut(s)	74, 179, 361, 608, 915, 1116
MboI	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
MboII	GAAGA	8 cut(s)	53, 94, 179, 336, 598, 611, 677, 728
MfeI	CAATTG	1 cut(s)	594
MflI	RGATCY	2 cut(s)	177, 359
MhlI	GDGCHC	1 cut(s)	448
MlsI	TGGCCA	1 cut(s)	322
MluCI	AATT	4 cut(s)	334, 459, 594, 1107
MluNI	TGGCCA	1 cut(s)	322
MlyI	GAGTC	2 cut(s)	685, 830
MmeI	TCCRAC	2 cut(s)	849, 1158
Mox20I	TGGCCA	1 cut(s)	322
MscI	TGGCCA	1 cut(s)	322
MseI	TTAA	3 cut(s)	129, 224, 408
MslI	CAYNNNNRTG	2 cut(s)	110, 273
Msp20I	TGGCCA	1 cut(s)	322
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	3 cut(s)	307, 732, 937
MunI	CAATTG	1 cut(s)	594
MvaI	CCWGG	2 cut(s)	732, 937
NciI	CCSGG	1 cut(s)	307
NdeII	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
NlaIII	CATG	5 cut(s)	115, 272, 482, 746, 1055
NmuCI	GTSAC	1 cut(s)	200
PceI	AGGCCT	1 cut(s)	53
PfeI	GAWTC	4 cut(s)	99, 158, 170, 191
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	2 cut(s)	685, 829
PpsI	GAGTC	2 cut(s)	685, 829
PpuMI	RGGWCCY	1 cut(s)	728
Psp1406I	AACGTT	1 cut(s)	1160
Psp5II	RGGWCCY	1 cut(s)	728
Psp6I	CCWGG	2 cut(s)	730, 935
PspFI	CCCAGC	1 cut(s)	1088
PspGI	CCWGG	2 cut(s)	730, 935
PspPI	GGNCC	1 cut(s)	728
PspPPI	RGGWCCY	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	177, 359
RsaI	GTAC	3 cut(s)	398, 571, 1037
RsaNI	GTAC	3 cut(s)	397, 570, 1036
RseI	CAYNNNNRTG	2 cut(s)	110, 273
SaqAI	TTAA	3 cut(s)	129, 224, 408
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	6 cut(s)	72, 177, 359, 606, 913, 1114
Sau96I	GGNCC	1 cut(s)	728
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	685, 830
ScrFI	CCNGG	3 cut(s)	307, 732, 937
SduI	GDGCHC	1 cut(s)	448
SexAI	ACCWGGT	1 cut(s)	730
SfaNI	GCATC	8 cut(s)	20, 227, 268, 364, 487, 523, 786, 895
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	728
SmiMI	CAYNNNNRTG	2 cut(s)	110, 273
SmlI	CTYRAG	1 cut(s)	1151
SmoI	CTYRAG	1 cut(s)	1151
Sse9I	AATT	4 cut(s)	334, 459, 594, 1107
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	377
SspI	AATATT	1 cut(s)	926
SspMI	CTAG	2 cut(s)	45, 198
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	3 cut(s)	305, 730, 935
TaaI	ACNGT	2 cut(s)	646, 956
TaiI	ACGT	1 cut(s)	1163
TaqI	TCGA	2 cut(s)	1117, 1125
TasI	AATT	4 cut(s)	334, 459, 594, 1107
TatI	WGTACW	2 cut(s)	396, 1035
TfiI	GAWTC	4 cut(s)	99, 158, 170, 191
Tru1I	TTAA	3 cut(s)	129, 224, 408
Tru9I	TTAA	3 cut(s)	129, 224, 408
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	5 cut(s)	415, 495, 747, 1048, 1109
TspGWI	ACGGA	2 cut(s)	47, 587
VpaK11BI	GGWCC	1 cut(s)	728
XapI	RAATTY	1 cut(s)	459
XbaI	TCTAGA	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	2 cut(s)	45, 198
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.