TATA box-binding protein-associated factor RNA polymerase I subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G42615 AT2G02955 |
| fragaria_vesca | FvH4_3g26291 |
| malus_domestica | MD04G1025400.v1.1 |
| prunus_persica | Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1 |
| pyrus_communis | pycom04g02160 |
| rosa_chinensis | RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021 |
| rosa_laevigata | RLG00000002264 RLG00000034545 |
| rosa_multiflora | Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00033160 Rroxscaffold_3G00239820 |
| rosa_rugosa | Rorug05G0240600 Rorug07G0188400 |
| rosa_samantha | Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900 |
| rosa_wichuraiana | Rw5G029910 Rw5G030190 Rw7G027980 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 320 |
| AfaI | GTAC | 2 cut(s) | 333, 372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 347 |
| AgeI | ACCGGT | 1 cut(s) | 328 |
| AluBI | AGCT | 2 cut(s) | 95, 206 |
| AluI | AGCT | 2 cut(s) | 95, 206 |
| Alw21I | GWGCWC | 1 cut(s) | 328 |
| Alw26I | GTCTC | 1 cut(s) | 35 |
| AoxI | GGCC | 1 cut(s) | 188 |
| AsiGI | ACCGGT | 1 cut(s) | 328 |
| AsuHPI | GGTGA | 3 cut(s) | 179, 304, 305 |
| Bbv12I | GWGCWC | 1 cut(s) | 328 |
| BccI | CCATC | 2 cut(s) | 218, 349 |
| BceAI | ACGGC | 1 cut(s) | 196 |
| BcoDI | GTCTC | 1 cut(s) | 35 |
| BlpI | GCTNAGC | 1 cut(s) | 207 |
| BmsI | GCATC | 1 cut(s) | 115 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 328 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 315, 345 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 347 |
| Bse118I | RCCGGY | 1 cut(s) | 328 |
| BseGI | GGATG | 2 cut(s) | 337, 415 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BseMII | CTCAG | 1 cut(s) | 198 |
| BshFI | GGCC | 1 cut(s) | 190 |
| BshTI | ACCGGT | 1 cut(s) | 328 |
| BsiHKAI | GWGCWC | 1 cut(s) | 328 |
| BsiSI | CCGG | 1 cut(s) | 329 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BsmAI | GTCTC | 1 cut(s) | 35 |
| BsnI | GGCC | 1 cut(s) | 190 |
| Bsp1286I | GDGCHC | 1 cut(s) | 328 |
| Bsp1407I | TGTACA | 1 cut(s) | 370 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 207 |
| BspACI | CCGC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 190 |
| BspCNI | CTCAG | 1 cut(s) | 199 |
| BsrFI | RCCGGY | 1 cut(s) | 328 |
| BsrGI | TGTACA | 1 cut(s) | 370 |
| BssAI | RCCGGY | 1 cut(s) | 328 |
| Bst4CI | ACNGT | 1 cut(s) | 370 |
| BstAUI | TGTACA | 1 cut(s) | 370 |
| BstDEI | CTNAG | 3 cut(s) | 183, 207, 220 |
| BstF5I | GGATG | 2 cut(s) | 337, 415 |
| BstMAI | GTCTC | 1 cut(s) | 35 |
| BsuRI | GGCC | 1 cut(s) | 190 |
| BtsCI | GGATG | 2 cut(s) | 337, 415 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 2 cut(s) | 125, 243 |
| Cfr10I | RCCGGY | 1 cut(s) | 328 |
| Csp6I | GTAC | 2 cut(s) | 332, 371 |
| CspAI | ACCGGT | 1 cut(s) | 328 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 6, 41 |
| CviAII | CATG | 1 cut(s) | 374 |
| CviJI | RGCY | 5 cut(s) | 13, 95, 190, 206, 211 |
| CviKI_1 | RGCY | 5 cut(s) | 13, 95, 190, 206, 211 |
| CviQI | GTAC | 2 cut(s) | 332, 371 |
| DdeI | CTNAG | 3 cut(s) | 183, 207, 220 |
| Eco147I | AGGCCT | 1 cut(s) | 190 |
| Eco32I | GATATC | 1 cut(s) | 297 |
| EcoRV | GATATC | 1 cut(s) | 297 |
| FaeI | CATG | 1 cut(s) | 377 |
| FaiI | YATR | 8 cut(s) | 54, 87, 247, 257, 272, 375, 398, 402 |
| FatI | CATG | 1 cut(s) | 373 |
| FauI | CCCGC | 1 cut(s) | 313 |
| FokI | GGATG | 2 cut(s) | 324, 422 |
| HaeIII | GGCC | 1 cut(s) | 190 |
| HapII | CCGG | 1 cut(s) | 329 |
| Hin1II | CATG | 1 cut(s) | 377 |
| HincII | GTYRAC | 1 cut(s) | 136 |
| HindII | GTYRAC | 1 cut(s) | 136 |
| HindIII | AAGCTT | 1 cut(s) | 93 |
| HpaII | CCGG | 1 cut(s) | 329 |
| HphI | GGTGA | 3 cut(s) | 179, 304, 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 136 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 350 |
| Hpy188III | TCNNGA | 1 cut(s) | 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 136 |
| HpyAV | CCTTC | 1 cut(s) | 425 |
| HpyCH4III | ACNGT | 1 cut(s) | 370 |
| HpyF3I | CTNAG | 3 cut(s) | 183, 207, 220 |
| Hsp92II | CATG | 1 cut(s) | 377 |
| LmnI | GCTCC | 2 cut(s) | 35, 323 |
| LpnPI | CCDG | 4 cut(s) | 36, 342, 371, 392 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeIII | GTNAC | 4 cut(s) | 148, 215, 238, 311 |
| MhlI | GDGCHC | 1 cut(s) | 328 |
| MmeI | TCCRAC | 1 cut(s) | 328 |
| MnlI | CCTC | 3 cut(s) | 49, 180, 382 |
| MseI | TTAA | 2 cut(s) | 144, 261 |
| MspI | CCGG | 1 cut(s) | 329 |
| NlaIII | CATG | 1 cut(s) | 377 |
| NmuCI | GTSAC | 3 cut(s) | 148, 238, 311 |
| PceI | AGGCCT | 1 cut(s) | 190 |
| PinAI | ACCGGT | 1 cut(s) | 328 |
| RsaI | GTAC | 2 cut(s) | 333, 372 |
| RsaNI | GTAC | 2 cut(s) | 332, 371 |
| SaqAI | TTAA | 2 cut(s) | 144, 261 |
| SduI | GDGCHC | 1 cut(s) | 328 |
| SetI | ASST | 3 cut(s) | 97, 208, 417 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SseBI | AGGCCT | 1 cut(s) | 190 |
| SsiI | CCGC | 1 cut(s) | 320 |
| StuI | AGGCCT | 1 cut(s) | 190 |
| TaaI | ACNGT | 1 cut(s) | 370 |
| TaqI | TCGA | 1 cut(s) | 281 |
| TatI | WGTACW | 1 cut(s) | 370 |
| Tru1I | TTAA | 2 cut(s) | 144, 261 |
| Tru9I | TTAA | 2 cut(s) | 144, 261 |
| TscAI | CASTG | 2 cut(s) | 125, 243 |
| TseFI | GTSAC | 3 cut(s) | 148, 238, 311 |
| Tsp45I | GTSAC | 3 cut(s) | 148, 238, 311 |
| TspDTI | ATGAA | 3 cut(s) | 84, 326, 345 |
| TspRI | CASTG | 2 cut(s) | 125, 243 |