Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017790.1

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Reverse (-)

657 .. 1427

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017790.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

atggtgaggagggattctaatacagcagtggaacaaggattgcattgtggtagaactgatgaccagaaaagaccaagttataatgaagaatgcactagtagtagtccatctagagaaaagaagcttaggaggccatcctccaatgaagaaacttctctcgcagatgaccataagtggagccaaaatggtgctcattttggtgatagctcacagaatagtcagaactcagaagtgaatgaccaagagttagctgagactttcaaagatgaagccattaatagaatgaaattagacatggaggagaagaggttctgttatattccaccgagggtgaacctcaaaagatttgactaccttcactatgtgaggaagcaggatgaaggtgcctacacttacgctgcacatgctgactactacatactacttcgtgcttgctctagagttgcccaagtcgaaactcggtgtatgcacattggggtgttgagctttgagaggagactggcttggttggagaagagaatcgagcactgcttgcacttgacccctcctattgtatcatgtgattattgtactgacatggttcctgagaacactactgatgcagaaactattgttgaggaatcgattggactttcaaatttgaatatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000120 GO:0000976 GO:0001013 GO:0001046 GO:0001047 GO:0001067 GO:0001163 GO:0001164 GO:0001188 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005668 GO:0005730 GO:0006139 GO:0006351 GO:0006352 GO:0006360 GO:0006361 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016043 GO:0016070 GO:0018130 GO:0019438 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0043933 GO:0044085 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0065003 GO:0065004 GO:0070013 GO:0070860 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0097159 GO:0097659 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1990837

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RRN7

Protein Analysis

216

Amino Acids

24.99

Weight (kDa)

5.53

Isoelectric Point (pI)

76.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccB1I	GGYRCC	1 cut(s)	383
AcsI	RAATTY	1 cut(s)	637
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	1 cut(s)	571
AgsI	TTSAA	3 cut(s)	262, 636, 643
AhlI	ACTAGT	1 cut(s)	95
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	4 cut(s)	124, 207, 251, 486
AluI	AGCT	4 cut(s)	124, 207, 251, 486
Alw21I	GWGCWC	2 cut(s)	193, 528
Alw26I	GTCTC	2 cut(s)	248, 490
AoxI	GGCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	398
ApoI	RAATTY	1 cut(s)	637
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	308
AsuHPI	GGTGA	3 cut(s)	16, 212, 343
BanI	GGYRCC	1 cut(s)	383
Bbv12I	GWGCWC	2 cut(s)	193, 528
BbvI	GCAGC	1 cut(s)	385
BccI	CCATC	2 cut(s)	115, 142
BcoDI	GTCTC	2 cut(s)	248, 490
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	3 cut(s)	96, 111, 438
BisI	GCNGC	1 cut(s)	399
BlsI	GCNGC	1 cut(s)	400
BmiI	GGNNCC	3 cut(s)	179, 385, 582
BmsI	GCATC	1 cut(s)	589
Bpu10I	CCTNAGC	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	623
BsaJI	CCNNGG	1 cut(s)	326
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bse1I	ACTGG	1 cut(s)	504
BseCI	ATCGAT	1 cut(s)	623
BseDI	CCNNGG	1 cut(s)	326
BseGI	GGATG	2 cut(s)	134, 382
BseMII	CTCAG	3 cut(s)	240, 243, 576
BseNI	ACTGG	1 cut(s)	504
BseRI	GAGGAG	3 cut(s)	22, 314, 508
BseXI	GCAGC	1 cut(s)	385
BsgI	GTGCAG	1 cut(s)	384
BshFI	GGCC	1 cut(s)	133
BshNI	GGYRCC	1 cut(s)	383
BshVI	ATCGAT	1 cut(s)	623
BsiHKAI	GWGCWC	2 cut(s)	193, 528
BsmAI	GTCTC	2 cut(s)	248, 490
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	193, 528
BspANI	GGCC	1 cut(s)	133
BspCNI	CTCAG	3 cut(s)	239, 244, 577
BspDI	ATCGAT	1 cut(s)	623
BspLI	GGNNCC	3 cut(s)	179, 385, 582
BspT107I	GGYRCC	1 cut(s)	383
BsrI	ACTGG	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	326
Bst6I	CTCTTC	2 cut(s)	299, 509
BstAPI	GCANNNNNTGC	1 cut(s)	532
BstC8I	GCNNGC	2 cut(s)	433, 533
BstDEI	CTNAG	4 cut(s)	125, 226, 252, 585
BstF5I	GGATG	2 cut(s)	134, 382
BstMAI	GTCTC	2 cut(s)	248, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	130, 404, 532
BstNSI	RCATGY	1 cut(s)	407
BstV1I	GCAGC	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	623
BsuRI	GGCC	1 cut(s)	133
BsuTUI	ATCGAT	1 cut(s)	623
BtsCI	GGATG	2 cut(s)	134, 382
BtsI	GCAGTG	2 cut(s)	33, 526
BtsIMutI	CAGTG	2 cut(s)	33, 526
Cac8I	GCNNGC	2 cut(s)	433, 533
ClaI	ATCGAT	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	570
CviAII	CATG	4 cut(s)	295, 404, 558, 577
CviJI	RGCY	8 cut(s)	124, 133, 180, 207, 251, 272, 486, 503
CviKI_1	RGCY	8 cut(s)	124, 133, 180, 207, 251, 272, 486, 503
CviQI	GTAC	1 cut(s)	570
DdeI	CTNAG	4 cut(s)	125, 226, 252, 585
DraIII	CACNNNGTG	1 cut(s)	364
Eam1104I	CTCTTC	2 cut(s)	299, 509
EarI	CTCTTC	2 cut(s)	299, 509
FaeI	CATG	4 cut(s)	298, 407, 561, 580
FatI	CATG	4 cut(s)	294, 403, 557, 576
Fnu4HI	GCNGC	1 cut(s)	399
FokI	GGATG	2 cut(s)	121, 389
Fsp4HI	GCNGC	1 cut(s)	399
FspBI	CTAG	3 cut(s)	96, 111, 438
GluI	GCNGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	133
Hin1II	CATG	4 cut(s)	298, 407, 561, 580
HindIII	AAGCTT	1 cut(s)	122
HinfI	GANTC	3 cut(s)	14, 519, 620
HphI	GGTGA	3 cut(s)	16, 212, 343
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	222, 229
Hpy188III	TCNNGA	3 cut(s)	111, 438, 584
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	2 cut(s)	365, 374
HpyCH4V	TGCA	6 cut(s)	43, 93, 401, 469, 535, 602
HpyF10VI	GCNNNNNNNGC	3 cut(s)	130, 404, 532
HpyF3I	CTNAG	4 cut(s)	125, 226, 252, 585
Hsp92II	CATG	4 cut(s)	298, 407, 561, 580
LmnI	GCTCC	1 cut(s)	177
LpnPI	CCDG	4 cut(s)	77, 359, 485, 597
Lsp1109I	GCAGC	1 cut(s)	385
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	3 cut(s)	96, 111, 438
MboII	GAAGA	4 cut(s)	98, 158, 316, 526
MhlI	GDGCHC	2 cut(s)	193, 528
MluCI	AATT	2 cut(s)	287, 637
MmeI	TCCRAC	1 cut(s)	489
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	2 cut(s)	198, 476
Mva1269I	GAATGC	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	130, 404, 532
NlaIII	CATG	4 cut(s)	298, 407, 561, 580
NlaIV	GGNNCC	3 cut(s)	179, 385, 582
NspI	RCATGY	1 cut(s)	407
PctI	GAATGC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	308
PfeI	GAWTC	3 cut(s)	14, 519, 620
PkrI	GCNGC	1 cut(s)	400
PshBI	ATTAAT	1 cut(s)	276
PsiI	TTATAA	1 cut(s)	81
PspN4I	GGNNCC	3 cut(s)	179, 385, 582
RsaI	GTAC	1 cut(s)	571
RsaNI	GTAC	1 cut(s)	570
RseI	CAYNNNNRTG	2 cut(s)	198, 476
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	1 cut(s)	399
SduI	GDGCHC	2 cut(s)	193, 528
SetI	ASST	8 cut(s)	126, 209, 253, 311, 339, 357, 385, 488
SfaNI	GCATC	1 cut(s)	589
SmiMI	CAYNNNNRTG	2 cut(s)	198, 476
SpeI	ACTAGT	1 cut(s)	95
Sse9I	AATT	2 cut(s)	287, 637
SspMI	CTAG	3 cut(s)	96, 111, 438
TaqI	TCGA	3 cut(s)	453, 522, 623
TasI	AATT	2 cut(s)	287, 637
TatI	WGTACW	1 cut(s)	569
TfiI	GAWTC	3 cut(s)	14, 519, 620
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	33, 533
TseI	GCWGC	1 cut(s)	398
TspDTI	ATGAA	5 cut(s)	99, 159, 282, 299, 393
TspRI	CASTG	2 cut(s)	33, 533
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	1 cut(s)	637
XbaI	TCTAGA	2 cut(s)	110, 437
XceI	RCATGY	1 cut(s)	407
XmnI	GAANNNNTTC	1 cut(s)	308
XspI	CTAG	3 cut(s)	96, 111, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.