Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005066

Physical Location & Seq

Genomic Coordinates Forward (+)

30864389 .. 30888817

Gene Structure 24429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGGGGAACCCAGATACATGGCGTTGCCAGAATTGCGGCAATGTGGGGCTGGAAGATGGCGATGATGGCTTCTTCTATTGCACCCAGTGCAACTCACAAGCCGAGGACTTCATGGACACCGGCGTGGCGGATGAGGACTTCCTCGACCAGACTGGCAACCCATTTGGAGGCCTCTACTCTGCTCGTCACACCCGTCGCATTAACAGCTCTGTTGTCAAAACAGAGCCCCTCTCCGAACCCTTAGACGACTTTAAAAAGAGCTCTGTTGTTTTGGAGCTTGATTCTTTGACTAGCCATGCACAACATCATGCAAAGTATGACCCTCAAGCACTGAAGGCGTGGTTTAGGTCCTTGAAGAAGATTATACCTCTATCTTATCGCGTGCGCATAACTCTAAGTTGGATACTGCAGAACTTTTGGCCAACCTTGAAGCAAGACATAATGAAATTGCTGATGACTATGGTAAATATGTTGGAGTGGTTTATTGTTGAAAATGATGATGCAATTTTTTTAAATTCACTTGTCTTGACAGAATATTGCAAGGACTTGCCAACATATCTCCAGTTCTGCAAGGATACAGATGCCAAGGAGGAAAAGTTAATTGAATCTTTATGGAACTTCTATCAAAGTGGAAAGCAGTGGGGCACGGATTGCATAGTGGTAGAACTGATCGATGACCAGAAAAGACCAAGGTATAATGAAGAATGCACTAGTAGTAGTCCATCTAGAGAAAAGAAGCTTAGGACGCCATCCTCCAATGACGAAACTTCTCTCGCAGATGACCATAAGAGGAGCCAAAATGGTGCTCATTTTGGTGATAGCTCACAGAATAGTCAGAACTCAGAAGTGAATGACCAAGAATTAGCTGAGACTCTCAAAGATGAAGCCATTAATAGAATGAAATTAGACATGGAGGAGAAGAGGTTCTGTTATATTCCACCAAGGGTGAATCTCAAAAGATTTGATTACCTTCACTATGTGAGGAAGCAGGATGAAGGTGCCTACACTTACGTTGCACATGCTGACTACTGCATACTGCTTCGTGCTTGCTCTAGAGTTGCCCAAGTCGAAACTCGGTGTATGCACATTGGGGTATTGAGCTTTGAGAGGAGACTGGCTTGGTTGGAGAAGAGAATCGACCACTGCTTGGACTTGACCCCTCCTATTTCCCAAAAGTTTATGACCATTGTGATTTACTTGATTTCAGGACTAGCTGGTGCCACAGCTGATGTGCACTGTTATGACATCCTAACAAATAAATGGTCTAGGATCACTCCCTTTGGAGAACCACCAACACCAAGGGCAGCACATGTAGCAACTGCTGTAGGAACTATGGTTGTTATTCAGGGAGGAATTGGTCCTGCTGGTTTGTCTGCTGAAGATCTACATGTTCTAGACCTCACTCAGCAACGGCCTCGATGGCACAGACGAGGGGAAATTGGTTTGTGCTTTCCAGGTAAACGGACTTTAGCTGATGTTTGGGCGCTGGACACAGCTTCCAAGCCATATGAATGGCGTAAGTTGGAACCAGAGGGGGAGGGTCCACCATCATGCATGTATGCAACTGCAAGTGCAAGGTCGGATGGTCTTCTCCTCCTTTGTAGAGGGAGGGATGCAAACAGTGTGGTTTTTGTTAATGCATGCTTGCATGTTTCCGGAGGGGCCCTTGGTGGTGGGCGCATGGTTGAAGAATCATCAAGTGTTGCTGTGTTGGATACTGCAGCCGGGGTTTGGTGCGATACAAAATCTGTTGTCACAAGTCCAAGGATAGGTAGATACAGCGCTGATGCAGCTGGTGGAGATGCTGCAGTTGAATTGACACGGCGTTGCAGGCATGCAGCTGCTACGGTTGGTGACCTGATATTTACTTACGGTGGTCTACGTGGTGGGGTGTTGCTTGATGACCTACTGGTTGTGGAAGATCTGGCTGCTGCAGAAACAACAACTGCAGCCTCGCATGCTGCAGCTGCAGCTGCTCAGTCTAATTTACCACCAGGCTGTTTGCCTAGAAGATATGGATTCATTGATGAAAGAACGAGGCAGATAATGCCTGAAGCAGCACCTGATGGTGCTGTTGTGCTGGGAAATCCAGTTGCCCCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0016020 GO:0044424 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Kelch_2 Kelch_4 Metallophos

Protein Analysis

702

Amino Acids

77.79

Weight (kDa)

5.49

Isoelectric Point (pI)

46.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kelch_KLHDC2_KLHL20_DRC7	PF24681	407 - 471	3e-11	KLHDC2/KLHL20/DRC7 Kelch-repeats domain
Beta-prop_FBX42	PF13415	408 - 470	2.4e-09	FBX42, beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005066)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42615 AT2G02955
fragaria_vesca	FvH4_3g26291
malus_domestica	MD04G1025400.v1.1
prunus_persica	Prupe.1G174900_v2.0.a1 Prupe.1G174900_v2.0.a1
pyrus_communis	pycom04g02160
rosa_chinensis	RchiOBHm_Chr5g0048631 RchiOBHm_Chr5g0048641 RchiOBHm_Chr7g0220011 RchiOBHm_Chr7g0220021
rosa_laevigata	RLG00000002264 RLG00000034545
rosa_multiflora	Rmu_sc0005838.1_g000011 Rmu_sc0011175.1_g000001 Rmu_sc0017790.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033160 Rroxscaffold_3G00239820
rosa_rugosa	Rorug05G0240600 Rorug07G0188400
rosa_samantha	Rh5AG319800 Rh5BG330000 Rh5CG356000 Rh5DG341200 Rh7AG332200 Rh7CG349700 Rh7DG327900
rosa_wichuraiana	Rw5G029910 Rw5G030190 Rw7G027980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	386
AccB1I	GGYRCC	2 cut(s)	998, 1217
AccB7I	CCANNNNNTGG	1 cut(s)	1147
AccI	GTMKAC	1 cut(s)	1879
AccII	CGCG	1 cut(s)	381
AccIII	TCCGGA	1 cut(s)	1655
AciI	CCGC	2 cut(s)	36, 128
AclWI	GGATC	1 cut(s)	1277
AcoI	YGGCCR	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	3 cut(s)	353, 1398, 2073
AcyI	GRCGYC	1 cut(s)	746
AdeI	CACNNNGTG	2 cut(s)	87, 979
AfeI	AGCGCT	1 cut(s)	1783
AfiI	CCNNNNNNNGG	4 cut(s)	167, 1147, 1731, 1769
AflIII	ACRYGT	2 cut(s)	1309, 1387
AgsI	TTSAA	6 cut(s)	355, 430, 491, 605, 1688, 1814
AhlI	ACTAGT	1 cut(s)	710
AjnI	CCWGG	2 cut(s)	1453, 1993
AleI	CACNNNNGTG	1 cut(s)	122
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
Alw21I	GWGCWC	3 cut(s)	263, 808, 1236
Alw26I	GTCTC	2 cut(s)	863, 1105
Alw44I	GTGCAC	1 cut(s)	1232
AlwI	GGATC	1 cut(s)	1277
AlwNI	CAGNNNCTG	1 cut(s)	2063
Aor13HI	TCCGGA	1 cut(s)	1655
Aor51HI	AGCGCT	1 cut(s)	1783
AoxI	GGCC	4 cut(s)	169, 419, 1412, 1662
ApaI	GGGCCC	1 cut(s)	1666
ApaLI	GTGCAC	1 cut(s)	1232
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	1247, 1279
AseI	ATTAAT	1 cut(s)	891
Asp700I	GAANNNNTTC	1 cut(s)	923
AspLEI	GCGC	4 cut(s)	387, 1486, 1680, 1784
AspS9I	GGNCC	5 cut(s)	348, 1358, 1541, 1662, 1663
AsuC2I	CCSGG	1 cut(s)	1726
AsuHPI	GGTGA	3 cut(s)	827, 958, 1865
AvaII	GGWCC	3 cut(s)	348, 1358, 1541
BaeGI	GKGCMC	3 cut(s)	647, 1236, 1666
BalI	TGGCCA	1 cut(s)	421
BanI	GGYRCC	2 cut(s)	998, 1217
BanII	GRGCYC	3 cut(s)	228, 263, 1666
BbsI	GAAGAC	1 cut(s)	1580
Bbv12I	GWGCWC	3 cut(s)	263, 808, 1236
BccI	CCATC	8 cut(s)	50, 59, 730, 757, 1413, 1555, 1577, 2060
BceAI	ACGGC	2 cut(s)	1427, 1838
BcgI	CGANNNNNNTGC	2 cut(s)	1397, 1431
BciT130I	CCWGG	2 cut(s)	1455, 1995
BciVI	GTATCC	3 cut(s)	396, 568, 1708
BcnI	CCSGG	1 cut(s)	1726
BcoDI	GTCTC	2 cut(s)	863, 1105
BcuI	ACTAGT	1 cut(s)	710
BfaI	CTAG	8 cut(s)	291, 711, 726, 1053, 1211, 1266, 1394, 2007
BfmI	CTRYAG	8 cut(s)	407, 1323, 1719, 1806, 1932, 1947, 1962, 1968
BfoI	RGCGCY	2 cut(s)	1487, 1785
BfuI	GTATCC	3 cut(s)	396, 568, 1708
BglI	GCCNNNNNGGC	1 cut(s)	1420
BglII	AGATCT	2 cut(s)	1381, 1921
Bme1390I	CCNGG	3 cut(s)	1455, 1726, 1995
Bme18I	GGWCC	3 cut(s)	348, 1358, 1541
BmgT120I	GGNCC	5 cut(s)	348, 1358, 1541, 1662, 1663
BmiI	GGNNCC	8 cut(s)	8, 794, 1000, 1219, 1527, 1542, 1663, 1664
BmrFI	CCNGG	3 cut(s)	1455, 1726, 1995
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	5 cut(s)	490, 571, 1603, 1777, 1792
BmuI	ACTGGG	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	1580
BplI	GAGNNNNNCTC	2 cut(s)	215, 247
BpmI	CTGGAG	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	740
BpuEI	CTTGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	1726
Bsa29I	ATCGAT	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	1883
BsaHI	GRCGYC	1 cut(s)	746
BsaJI	CCNNGG	8 cut(s)	102, 585, 689, 941, 1298, 1666, 1725, 1763
BsaWI	WCCGGW	1 cut(s)	1655
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 908, 938
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 1147, 1731, 1769
Bse118I	RCCGGY	1 cut(s)	119
Bse1I	ACTGG	6 cut(s)	85, 157, 562, 1119, 1914, 2090
Bse3DI	GCAATG	1 cut(s)	46
BseAI	TCCGGA	1 cut(s)	1655
BseBI	CCWGG	2 cut(s)	1455, 1995
BseCI	ATCGAT	1 cut(s)	672
BseDI	CCNNGG	8 cut(s)	102, 585, 689, 941, 1298, 1666, 1725, 1763
BseGI	GGATG	6 cut(s)	136, 749, 997, 1245, 1588, 1618
BseLI	CCNNNNNNNGG	4 cut(s)	167, 1147, 1731, 1769
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	4 cut(s)	855, 858, 1418, 1991
BseNI	ACTGG	6 cut(s)	85, 157, 562, 1119, 1914, 2090
BseRI	GAGGAG	4 cut(s)	805, 929, 1123, 1583
BseSI	GKGCMC	3 cut(s)	647, 1236, 1666
BseYI	CCCAGC	1 cut(s)	2080
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	4 cut(s)	171, 421, 1414, 1664
BshNI	GGYRCC	2 cut(s)	998, 1217
BshVI	ATCGAT	1 cut(s)	672
BsiHKAI	GWGCWC	3 cut(s)	263, 808, 1236
BsiSI	CCGG	3 cut(s)	120, 1656, 1725
BslI	CCNNNNNNNGG	4 cut(s)	167, 1147, 1731, 1769
BsmAI	GTCTC	2 cut(s)	863, 1105
BsmI	GAATGC	1 cut(s)	710
BsnI	GGCC	4 cut(s)	171, 421, 1414, 1664
Bsp120I	GGGCCC	1 cut(s)	1662
Bsp1286I	GDGCHC	6 cut(s)	228, 263, 647, 808, 1236, 1666
Bsp13I	TCCGGA	1 cut(s)	1655
Bsp143I	GATC	4 cut(s)	669, 1269, 1381, 1921
BspACI	CCGC	2 cut(s)	36, 128
BspANI	GGCC	4 cut(s)	171, 421, 1414, 1664
BspCNI	CTCAG	4 cut(s)	854, 859, 1417, 1990
BspDI	ATCGAT	1 cut(s)	672
BspEI	TCCGGA	1 cut(s)	1655
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	8 cut(s)	8, 794, 1000, 1219, 1527, 1542, 1663, 1664
BspMAI	CTGCAG	7 cut(s)	411, 1723, 1810, 1936, 1951, 1966, 1972
BspPI	GGATC	1 cut(s)	1277
BspT107I	GGYRCC	2 cut(s)	998, 1217
BsrDI	GCAATG	1 cut(s)	46
BsrFI	RCCGGY	1 cut(s)	119
BsrI	ACTGG	6 cut(s)	85, 157, 562, 1119, 1914, 2090
BssAI	RCCGGY	1 cut(s)	119
BssECI	CCNNGG	8 cut(s)	102, 585, 689, 941, 1298, 1666, 1725, 1763
BssMI	GATC	4 cut(s)	669, 1269, 1381, 1921
BssNI	GRCGYC	1 cut(s)	746
BssT1I	CCWWGG	6 cut(s)	585, 689, 941, 1298, 1666, 1763
Bst2UI	CCWGG	2 cut(s)	1455, 1995
Bst4CI	ACNGT	5 cut(s)	1238, 1622, 1849, 1874, 2103
Bst6I	CTCTTC	2 cut(s)	914, 1124
BstACI	GRCGYC	1 cut(s)	746
BstAPI	GCANNNNNTGC	3 cut(s)	87, 651, 2047
BstBAI	YACGTR	1 cut(s)	1883
BstC8I	GCNNGC	7 cut(s)	383, 1048, 1642, 1646, 1832, 1836, 1959
BstDEI	CTNAG	7 cut(s)	241, 395, 740, 841, 867, 1404, 1977
BstEII	GGTNACC	1 cut(s)	1853
BstF5I	GGATG	6 cut(s)	136, 749, 997, 1245, 1588, 1618
BstFNI	CGCG	1 cut(s)	381
BstH2I	RGCGCY	2 cut(s)	1487, 1785
BstHHI	GCGC	4 cut(s)	387, 1486, 1680, 1784
BstKTI	GATC	4 cut(s)	672, 1272, 1384, 1924
BstMAI	GTCTC	2 cut(s)	863, 1105
BstMBI	GATC	4 cut(s)	669, 1269, 1381, 1921
BstNI	CCWGG	2 cut(s)	1455, 1995
BstNSI	RCATGY	8 cut(s)	1022, 1313, 1391, 1558, 1644, 1652, 1838, 1961
BstPI	GGTNACC	1 cut(s)	1853
BstSCI	CCNGG	3 cut(s)	1453, 1724, 1993
BstSFI	CTRYAG	8 cut(s)	407, 1323, 1719, 1806, 1932, 1947, 1962, 1968
BstSLI	GKGCMC	3 cut(s)	647, 1236, 1666
BstUI	CGCG	1 cut(s)	381
BstV2I	GAAGAC	1 cut(s)	1580
BstX2I	RGATCY	2 cut(s)	1381, 1921
BstXI	CCANNNNNNTGG	2 cut(s)	18, 1512
BstYI	RGATCY	2 cut(s)	1381, 1921
Bsu15I	ATCGAT	1 cut(s)	672
BsuI	GTATCC	3 cut(s)	396, 568, 1708
BsuRI	GGCC	4 cut(s)	171, 421, 1414, 1664
BsuTUI	ATCGAT	1 cut(s)	672
BtgZI	GCGATG	1 cut(s)	75
BtsCI	GGATG	6 cut(s)	136, 749, 997, 1245, 1588, 1618
BtsI	GCAGTG	2 cut(s)	644, 1141
BtsIMutI	CAGTG	6 cut(s)	92, 329, 644, 1141, 1234, 1627
Cac8I	GCNNGC	7 cut(s)	383, 1048, 1642, 1646, 1832, 1836, 1959
CaiI	CAGNNNCTG	1 cut(s)	2063
CfoI	GCGC	4 cut(s)	387, 1486, 1680, 1784
Cfr10I	RCCGGY	1 cut(s)	119
Cfr13I	GGNCC	5 cut(s)	348, 1358, 1541, 1662, 1663
ClaI	ATCGAT	1 cut(s)	672
CseI	GACGC	1 cut(s)	754
CspCI	CAANNNNNGTGG	2 cut(s)	1605, 1640
DdeI	CTNAG	7 cut(s)	241, 395, 740, 841, 867, 1404, 1977
DpnI	GATC	4 cut(s)	671, 1271, 1383, 1923
DpnII	GATC	4 cut(s)	669, 1269, 1381, 1921
DraI	TTTAAA	2 cut(s)	253, 513
DraIII	CACNNNGTG	2 cut(s)	87, 979
EaeI	YGGCCR	1 cut(s)	419
Eam1104I	CTCTTC	2 cut(s)	914, 1124
EarI	CTCTTC	2 cut(s)	914, 1124
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	261
Eco130I	CCWWGG	6 cut(s)	585, 689, 941, 1298, 1666, 1763
Eco147I	AGGCCT	1 cut(s)	171
Eco24I	GRGCYC	3 cut(s)	228, 263, 1666
Eco47I	GGWCC	3 cut(s)	348, 1358, 1541
Eco47III	AGCGCT	1 cut(s)	1783
Eco53kI	GAGCTC	1 cut(s)	261
Eco57I	CTGAAG	3 cut(s)	353, 1398, 2073
Eco91I	GGTNACC	1 cut(s)	1853
EcoICRI	GAGCTC	1 cut(s)	261
EcoO109I	RGGNCCY	3 cut(s)	348, 1662, 1663
EcoO65I	GGTNACC	1 cut(s)	1853
EcoRII	CCWGG	2 cut(s)	1453, 1993
EcoT14I	CCWWGG	6 cut(s)	585, 689, 941, 1298, 1666, 1763
EcoT22I	ATGCAT	2 cut(s)	1556, 1642
EcoT38I	GRGCYC	3 cut(s)	228, 263, 1666
ErhI	CCWWGG	6 cut(s)	585, 689, 941, 1298, 1666, 1763
FauNDI	CATATG	1 cut(s)	1507
FblI	GTMKAC	1 cut(s)	1879
FokI	GGATG	6 cut(s)	143, 736, 1004, 1232, 1595, 1625
FriOI	GRGCYC	3 cut(s)	228, 263, 1666
FspAI	RTGCGCAY	1 cut(s)	386
FspBI	CTAG	8 cut(s)	291, 711, 726, 1053, 1211, 1266, 1394, 2007
FspI	TGCGCA	1 cut(s)	386
GlaI	GCGC	4 cut(s)	386, 1485, 1679, 1783
GsaI	CCCAGC	1 cut(s)	2084
GsuI	CTGGAG	1 cut(s)	545
HaeII	RGCGCY	2 cut(s)	1487, 1785
HaeIII	GGCC	4 cut(s)	171, 421, 1414, 1664
HapII	CCGG	3 cut(s)	120, 1656, 1725
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	4 cut(s)	387, 1486, 1680, 1784
Hin1I	GRCGYC	1 cut(s)	746
Hin6I	GCGC	4 cut(s)	385, 1484, 1678, 1782
HinP1I	GCGC	4 cut(s)	385, 1484, 1678, 1782
HindIII	AAGCTT	1 cut(s)	737
HinfI	GANTC	7 cut(s)	281, 605, 871, 949, 1134, 1691, 2019
HpaII	CCGG	3 cut(s)	120, 1656, 1725
HphI	GGTGA	3 cut(s)	827, 958, 1865
Hpy166II	GTNNAC	4 cut(s)	1234, 1460, 1544, 1880
Hpy188I	TCNGA	4 cut(s)	235, 837, 844, 1582
Hpy188III	TCNNGA	6 cut(s)	526, 726, 1053, 1206, 1394, 1656
Hpy8I	GTNNAC	4 cut(s)	1234, 1460, 1544, 1880
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	3 cut(s)	328, 980, 989
HpyCH4III	ACNGT	5 cut(s)	1238, 1622, 1849, 1874, 2103
HpyCH4IV	ACGT	2 cut(s)	1011, 1882
HpyF3I	CTNAG	7 cut(s)	241, 395, 740, 841, 867, 1404, 1977
HpySE526I	ACGT	2 cut(s)	1011, 1882
Hsp92I	GRCGYC	1 cut(s)	746
HspAI	GCGC	4 cut(s)	385, 1484, 1678, 1782
Kpn2I	TCCGGA	1 cut(s)	1655
Kzo9I	GATC	4 cut(s)	669, 1269, 1381, 1921
LmnI	GCTCC	2 cut(s)	274, 792
LweI	GCATC	5 cut(s)	490, 571, 1603, 1777, 1792
MaeI	CTAG	8 cut(s)	291, 711, 726, 1053, 1211, 1266, 1394, 2007
MaeII	ACGT	2 cut(s)	1011, 1882
MaeIII	GTNAC	3 cut(s)	185, 1753, 1853
MalI	GATC	4 cut(s)	671, 1271, 1383, 1923
MboI	GATC	4 cut(s)	669, 1269, 1381, 1921
MflI	RGATCY	2 cut(s)	1381, 1921
MhlI	GDGCHC	6 cut(s)	228, 263, 647, 808, 1236, 1666
MlsI	TGGCCA	1 cut(s)	421
MluNI	TGGCCA	1 cut(s)	421
MlyI	GAGTC	1 cut(s)	865
MmeI	TCCRAC	6 cut(s)	380, 453, 1104, 1503, 1560, 1692
Mox20I	TGGCCA	1 cut(s)	421
Mph1103I	ATGCAT	2 cut(s)	1556, 1642
MroI	TCCGGA	1 cut(s)	1655
MroXI	GAANNNNTTC	1 cut(s)	923
MscI	TGGCCA	1 cut(s)	421
MseI	TTAA	6 cut(s)	201, 252, 512, 599, 891, 1635
MslI	CAYNNNNRTG	5 cut(s)	122, 813, 1239, 1510, 1549
Msp20I	TGGCCA	1 cut(s)	421
MspA1I	CMGCKG	5 cut(s)	1226, 1793, 1841, 1967, 1973
MspI	CCGG	3 cut(s)	120, 1656, 1725
MspR9I	CCNGG	3 cut(s)	1455, 1726, 1995
Mva1269I	GAATGC	1 cut(s)	710
MvaI	CCWGG	2 cut(s)	1455, 1995
MvnI	CGCG	1 cut(s)	381
NciI	CCSGG	1 cut(s)	1726
NdeI	CATATG	1 cut(s)	1507
NdeII	GATC	4 cut(s)	669, 1269, 1381, 1921
NlaIV	GGNNCC	8 cut(s)	8, 794, 1000, 1219, 1527, 1542, 1663, 1664
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	3 cut(s)	185, 1753, 1853
NsbI	TGCGCA	1 cut(s)	386
NsiI	ATGCAT	2 cut(s)	1556, 1642
NspI	RCATGY	8 cut(s)	1022, 1313, 1391, 1558, 1644, 1652, 1838, 1961
OliI	CACNNNNGTG	1 cut(s)	122
PaeI	GCATGC	3 cut(s)	1644, 1838, 1961
PceI	AGGCCT	1 cut(s)	171
PciI	ACATGT	2 cut(s)	1309, 1387
PcsI	WCGNNNNNNNCGW	1 cut(s)	190
PctI	GAATGC	1 cut(s)	710
PdmI	GAANNNNTTC	1 cut(s)	923
PfeI	GAWTC	6 cut(s)	281, 605, 949, 1134, 1691, 2019
PflMI	CCANNNNNTGG	1 cut(s)	1147
PleI	GAGTC	1 cut(s)	865
PpsI	GAGTC	1 cut(s)	865
Ppu21I	YACGTR	1 cut(s)	1883
PpuMI	RGGWCCY	1 cut(s)	348
PscI	ACATGT	2 cut(s)	1309, 1387
PshBI	ATTAAT	1 cut(s)	891
Psp124BI	GAGCTC	1 cut(s)	263
Psp5II	RGGWCCY	1 cut(s)	348
Psp6I	CCWGG	2 cut(s)	1453, 1993
PspEI	GGTNACC	1 cut(s)	1853
PspFI	CCCAGC	1 cut(s)	2080
PspGI	CCWGG	2 cut(s)	1453, 1993
PspN4I	GGNNCC	8 cut(s)	8, 794, 1000, 1219, 1527, 1542, 1663, 1664
PspOMI	GGGCCC	1 cut(s)	1662
PspPI	GGNCC	5 cut(s)	348, 1358, 1541, 1662, 1663
PspPPI	RGGWCCY	1 cut(s)	348
PstI	CTGCAG	7 cut(s)	411, 1723, 1810, 1936, 1951, 1966, 1972
PstNI	CAGNNNCTG	1 cut(s)	2063
PsuI	RGATCY	2 cut(s)	1381, 1921
PvuII	CAGCTG	5 cut(s)	1226, 1793, 1841, 1967, 1973
RseI	CAYNNNNRTG	5 cut(s)	122, 813, 1239, 1510, 1549
SacI	GAGCTC	1 cut(s)	263
SaqAI	TTAA	6 cut(s)	201, 252, 512, 599, 891, 1635
Sau3AI	GATC	4 cut(s)	669, 1269, 1381, 1921
Sau96I	GGNCC	5 cut(s)	348, 1358, 1541, 1662, 1663
SchI	GAGTC	1 cut(s)	865
ScrFI	CCNGG	3 cut(s)	1455, 1726, 1995
SduI	GDGCHC	6 cut(s)	228, 263, 647, 808, 1236, 1666
SfaNI	GCATC	5 cut(s)	490, 571, 1603, 1777, 1792
SfcI	CTRYAG	8 cut(s)	407, 1323, 1719, 1806, 1932, 1947, 1962, 1968
SgrAI	CRCCGGYG	1 cut(s)	119
SinI	GGWCC	3 cut(s)	348, 1358, 1541
SmiMI	CAYNNNNRTG	5 cut(s)	122, 813, 1239, 1510, 1549
SmlI	CTYRAG	1 cut(s)	324
SmoI	CTYRAG	1 cut(s)	324
SpeI	ACTAGT	1 cut(s)	710
SphI	GCATGC	3 cut(s)	1644, 1838, 1961
SseBI	AGGCCT	1 cut(s)	171
SsiI	CCGC	2 cut(s)	36, 128
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	8 cut(s)	291, 711, 726, 1053, 1211, 1266, 1394, 2007
SstI	GAGCTC	1 cut(s)	263
StuI	AGGCCT	1 cut(s)	171
StyD4I	CCNGG	3 cut(s)	1453, 1724, 1993
StyI	CCWWGG	6 cut(s)	585, 689, 941, 1298, 1666, 1763
TaaI	ACNGT	5 cut(s)	1238, 1622, 1849, 1874, 2103
TaiI	ACGT	2 cut(s)	1014, 1885
TaqI	TCGA	5 cut(s)	144, 672, 1068, 1137, 1417
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	6 cut(s)	281, 605, 949, 1134, 1691, 2019
Tru1I	TTAA	6 cut(s)	201, 252, 512, 599, 891, 1635
Tru9I	TTAA	6 cut(s)	201, 252, 512, 599, 891, 1635
TscAI	CASTG	6 cut(s)	92, 336, 644, 1148, 1241, 1627
TseFI	GTSAC	3 cut(s)	185, 1753, 1853
Tsp45I	GTSAC	3 cut(s)	185, 1753, 1853
TspDTI	ATGAA	9 cut(s)	100, 458, 714, 897, 914, 1008, 1524, 2011, 2043
TspGWI	ACGGA	2 cut(s)	662, 1477
TspRI	CASTG	6 cut(s)	92, 336, 644, 1148, 1241, 1627
Van91I	CCANNNNNTGG	1 cut(s)	1147
VneI	GTGCAC	1 cut(s)	1232
VpaK11BI	GGWCC	3 cut(s)	348, 1358, 1541
VspI	ATTAAT	1 cut(s)	891
XapI	RAATTY	1 cut(s)	514
XbaI	TCTAGA	3 cut(s)	725, 1052, 1393
XceI	RCATGY	8 cut(s)	1022, 1313, 1391, 1558, 1644, 1652, 1838, 1961
XmiI	GTMKAC	1 cut(s)	1879
XmnI	GAANNNNTTC	1 cut(s)	923
XspI	CTAG	8 cut(s)	291, 711, 726, 1053, 1211, 1266, 1394, 2007
Zsp2I	ATGCAT	2 cut(s)	1556, 1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.